View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1365_low_35 (Length: 238)
Name: NF1365_low_35
Description: NF1365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1365_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 34435649 - 34435430
Alignment:
| Q |
1 |
tttattgacagctgagatgcctgtgcagtcacactgcacccaatccaaatgtgtgagtgttaagacaccggcaaatgtcggacacaaaacatgtgttcca |
100 |
Q |
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| T |
34435649 |
tttattgacagctgatatgcctgtgcaatcacactgcaaccaatccaaatgtgtgagtgttaagacaccggcaaatgtcggacacaaaacatgtgttcca |
34435550 |
T |
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| Q |
101 |
tctgatgatggtgatgtattaatacattttttggcactaacttatataatccatatgattttataattccagccctatcatgatgagtgctggagagcta |
200 |
Q |
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| T |
34435549 |
tctgatgatggtgatgtattaatacattttttggcactaacttatataatccatatgattttataattccagccctatcatgatgagtgctggagagcta |
34435450 |
T |
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| Q |
201 |
gaaagtggaaatgcgggaga |
220 |
Q |
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| T |
34435449 |
gaaagtggaaatgcgggaga |
34435430 |
T |
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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 170 - 220
Target Start/End: Complemental strand, 30666118 - 30666068
Alignment:
| Q |
170 |
cagccctatcatgatgagtgctggagagctagaaagtggaaatgcgggaga |
220 |
Q |
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| T |
30666118 |
cagccccatcatgatgagtgctggagagcttgaaagtggaaatgcaggaga |
30666068 |
T |
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