View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1365_low_4 (Length: 712)
Name: NF1365_low_4
Description: NF1365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1365_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 339; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 66 - 432
Target Start/End: Original strand, 43807944 - 43808310
Alignment:
| Q |
66 |
agtagcataggcagtggtgttgttatcaaccaccggagcaccaatcctcatcctcacaccttcaaaaatattgcgagcatcaatgaaacgcttccacatc |
165 |
Q |
| |
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|||| ||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
43807944 |
agtaacatagacagtggtgttgttatcaaccaccagagcaccaatgctcatcctcacaccttcaaaaatattgcgagcatcaatgaaacgctttcacatc |
43808043 |
T |
|
| Q |
166 |
ccaccaatcttgcaatactcatacaaagtcgacccaaacatcaaaacacagtcccaagcatttccacagtcatcccccagtttcacggttgcggcagccc |
265 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43808044 |
ccaccaatcttgcaatactcatacagagtcgacccaaacatcaaaacacagtcccaagcatttccacagtcatcccccagtttcacggttgcggcagccc |
43808143 |
T |
|
| Q |
266 |
tgtcaataatctcctcacatcgtccttcatatttcagcatatatgaaaagcaaaaatcaaagcaaaacaatgtgcataatggcaccctaaaacaaatcag |
365 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43808144 |
tgtcaataatctcctcacatcgtccttcatatttcagcatatatgaaaagcaaaaatcaaagcaaaacaatgtgcataatggcaccctaaaacaaatcag |
43808243 |
T |
|
| Q |
366 |
aatggaaaatcagcaataagaagaaatatagcagaaccaaataacgccaaccatgagcatgaataac |
432 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43808244 |
aatgaaaaatcagcaataagaagaaatatagcagaaccaaataacgccaaccatgagcatgaataac |
43808310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 473 - 594
Target Start/End: Original strand, 43808370 - 43808491
Alignment:
| Q |
473 |
aatgtacgttctgtatttcattcttagcttgttgagaacagtatcaaactcgctctcagggttgttgattaaaggaccagttagggaatcgtaggcaagg |
572 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
43808370 |
aatgtacgttctgtatttcattcttagcttgttgagaacagtatcaaactcgctctcagggttgttgattaaaggaccggttagggaatcgtaggcaagg |
43808469 |
T |
|
| Q |
573 |
agggtttgaatgttgcggccag |
594 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
43808470 |
agggtttgaatgttgcggccag |
43808491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 496 - 586
Target Start/End: Complemental strand, 19469261 - 19469171
Alignment:
| Q |
496 |
ttagcttgttgagaacagtatcaaactcgctctcagggttgttgattaaaggaccagttagggaatcgtaggcaaggagggtttgaatgtt |
586 |
Q |
| |
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|||||||||| ||||| | |||||||||| |||| ||||||||| ||||||||||||||| ||| ||||||||| |||||||||||||| |
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| T |
19469261 |
ttagcttgttaagaaccgcatcaaactcgaaatcagagttgttgatcaaaggaccagttaggaaatggtaggcaagcagggtttgaatgtt |
19469171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 102; Significance: 3e-50; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 473 - 594
Target Start/End: Original strand, 37148012 - 37148133
Alignment:
| Q |
473 |
aatgtacgttctgtatttcattcttagcttgttgagaacagtatcaaactcgctctcagggttgttgattaaaggaccagttagggaatcgtaggcaagg |
572 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||| |
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| T |
37148012 |
aatgtacgttctgtatttcattcttctcttgttgagaacagtatcaaactcgctctcatggttgttgattaaaggaccacttagggaatggtaggcaagg |
37148111 |
T |
|
| Q |
573 |
agggtttgaatgttgcggccag |
594 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
37148112 |
agggtttgaatgttgcggccag |
37148133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 332 - 432
Target Start/End: Original strand, 37147832 - 37147935
Alignment:
| Q |
332 |
acaatgtgcataatggcaccctaaaacaaatca---gaatggaaaatcagcaataagaagaaatatagcagaaccaaataacgccaaccatgagcatgaa |
428 |
Q |
| |
|
|||||||||||||||||||||||||| ||| | |||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
37147832 |
acaatgtgcataatggcaccctaaaaaaaaaaaagagaataaaaaatcagaaataagaagaaatatagcagaaccaaataacatgaaccatgagcatgaa |
37147931 |
T |
|
| Q |
429 |
taac |
432 |
Q |
| |
|
|||| |
|
|
| T |
37147932 |
taac |
37147935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 496 - 586
Target Start/End: Original strand, 47866201 - 47866291
Alignment:
| Q |
496 |
ttagcttgttgagaacagtatcaaactcgctctcagggttgttgattaaaggaccagttagggaatcgtaggcaaggagggtttgaatgtt |
586 |
Q |
| |
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||||| |||| ||||| | |||||||||| |||| ||||||||| |||||||||| |||| ||| ||||||||| |||||||||||||| |
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| T |
47866201 |
ttagcctgttaagaaccgcatcaaactcggaatcagagttgttgatcaaaggaccagataggaaatggtaggcaagcagggtttgaatgtt |
47866291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 4e-37; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 78 - 305
Target Start/End: Complemental strand, 38507633 - 38507406
Alignment:
| Q |
78 |
agtggtgttgttatcaaccaccggagcaccaatcctcatcctcacaccttcaaaaatattgcgagcatcaatgaaacgcttccacatcccaccaatcttg |
177 |
Q |
| |
|
||||| |||||| |||||||| | || | |||| | ||||||||||||||||||| ||| ||||||||| ||||||||||| |||||||||||||| |
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| T |
38507633 |
agtggagttgtttccaaccacctgggcgcaaatcataatcctcacaccttcaaaaaatttgtgagcatcaacaaaacgcttccagctcccaccaatcttg |
38507534 |
T |
|
| Q |
178 |
caatactcatacaaagtcgacccaaacatcaaaacacagtcccaagcatttccacagtcatcccccagtttcacggttgcggcagccctgtcaataatct |
277 |
Q |
| |
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|| | ||||||| |||| | ||||||||||||||||||||||| ||||| || |||||||| ||||||||||||||| ||||||| ||| ||||| || |
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| T |
38507533 |
cagtgctcatacggagtcaatccaaacatcaaaacacagtcccactcattttcatagtcatccaccagtttcacggttgtggcagccatgttaataacct |
38507434 |
T |
|
| Q |
278 |
cctcacatcgtccttcatatttcagcat |
305 |
Q |
| |
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|| | |||||||||||||| ||||| |
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| T |
38507433 |
gctgaacgcgtccttcatatttgagcat |
38507406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 192 - 250
Target Start/End: Complemental strand, 48539613 - 48539555
Alignment:
| Q |
192 |
agtcgacccaaacatcaaaacacagtcccaagcatttccacagtcatcccccagtttca |
250 |
Q |
| |
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|||||| ||||| |||||||||||||||||| ||||||||| |||||| ||| ||||| |
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|
| T |
48539613 |
agtcgagccaaagatcaaaacacagtcccaacaatttccacaatcatccaccattttca |
48539555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 192 - 250
Target Start/End: Original strand, 13066199 - 13066257
Alignment:
| Q |
192 |
agtcgacccaaacatcaaaacacagtcccaagcatttccacagtcatcccccagtttca |
250 |
Q |
| |
|
|||||| ||||| |||||||||||||||||| ||||||||| |||||| ||| ||||| |
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|
| T |
13066199 |
agtcgagccaaagatcaaaacacagtcccaacaatttccacaatcatccaccattttca |
13066257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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