View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1365_low_43 (Length: 203)
Name: NF1365_low_43
Description: NF1365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1365_low_43 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 77; Significance: 6e-36; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 123 - 203
Target Start/End: Complemental strand, 16124706 - 16124626
Alignment:
| Q |
123 |
aagatgctctcaccgaagtctccaatttatctgggtgggactctaaaaattcaaggtaaataaaatgaattatccatctaa |
203 |
Q |
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| T |
16124706 |
aagatgctctcaccgaagtctccaatttatctgggtgggactctaaaagttcaaggtaaataaaatgaattatccatctaa |
16124626 |
T |
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Target: chr2; HSP #2
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 123 - 203
Target Start/End: Original strand, 16334960 - 16335040
Alignment:
| Q |
123 |
aagatgctctcaccgaagtctccaatttatctgggtgggactctaaaaattcaaggtaaataaaatgaattatccatctaa |
203 |
Q |
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| T |
16334960 |
aagatgctctcaccgaagtctccaaattatctgggtgggactctaaaaattcaaggtaaataaaatgaattatccatctaa |
16335040 |
T |
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Target: chr3 (Bit Score: 35; Significance: 0.00000000007; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 123 - 201
Target Start/End: Complemental strand, 36025275 - 36025197
Alignment:
| Q |
123 |
aagatgctctcaccgaagtctccaatttatctgggtgggactctaaaaattcaaggtaaataaaatgaattatccatct |
201 |
Q |
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| T |
36025275 |
aagatgctctcaccgaagctgccaatttagctgggtggtactctcaaaattacaagtaaataaaataaattatacatct |
36025197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 188
Target Start/End: Complemental strand, 36017177 - 36017112
Alignment:
| Q |
123 |
aagatgctctcaccgaagtctccaatttatctgggtgggactctaaaaattcaaggtaaataaaat |
188 |
Q |
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| T |
36017177 |
aagatgctctcactgaagcagccactttatctgggtggcactatcaaaattcaaggtaaataaaat |
36017112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 188
Target Start/End: Complemental strand, 36034083 - 36034018
Alignment:
| Q |
123 |
aagatgctctcaccgaagtctccaatttatctgggtgggactctaaaaattcaaggtaaataaaat |
188 |
Q |
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| T |
36034083 |
aagatgctctcactgaagcagccactttatctgggtggcactatcaaaattcaaggtaaataaaat |
36034018 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 191
Target Start/End: Original strand, 12894918 - 12894986
Alignment:
| Q |
123 |
aagatgctctcaccgaagtctccaatttatctgggtgggactctaaaaattcaaggtaaataaaatgaa |
191 |
Q |
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| T |
12894918 |
aagatgctctcattgaagcagccaatttagctgggtggcactctcaaaattacaggtaaataaaatgaa |
12894986 |
T |
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