View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1365_low_45 (Length: 201)
Name: NF1365_low_45
Description: NF1365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1365_low_45 |
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Alignment Details
Target: chr5 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 21 - 187
Target Start/End: Original strand, 7824252 - 7824417
Alignment:
| Q |
21 |
tcccaatcatcatcttcgccgtttcaccacaagattcaaagcaaatttcaacagaaccatcaatggaaacatcataagaggacattagtttatccttttc |
120 |
Q |
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| T |
7824252 |
tcccgatcatcatctccgccgtttcaccacaagattcaaagcaaatttgaacagaaccatcaatggaaacatcataagaggacattagtttatccttttc |
7824351 |
T |
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| Q |
121 |
tgnnnnnnnnatatcagcagtagttgctgcttctgtttttgcagcatgccatttgtgttggcctttg |
187 |
Q |
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| T |
7824352 |
tg-ttttttgatatcagcagtagttgttgcttctgtttttgcagcatgccatttgtgttggcttttg |
7824417 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 182
Target Start/End: Complemental strand, 25967806 - 25967758
Alignment:
| Q |
135 |
cagcagtagttgctgcttctgtttttgcagca-tgccatttgtgttggc |
182 |
Q |
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||||||||| |||||||||||||||||||||| ||| ||||||||||| |
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| T |
25967806 |
cagcagtagctgctgcttctgtttttgcagcagggccgtttgtgttggc |
25967758 |
T |
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