View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13660_high_12 (Length: 247)
Name: NF13660_high_12
Description: NF13660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13660_high_12 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 5 - 247
Target Start/End: Original strand, 47241714 - 47241956
Alignment:
| Q |
5 |
ccaagaatatatttgtcagtcatgaaccacattcagtcattcactaagttattcacactgcatcagtcttcttcaaagtaataatttggtatctctggcg |
104 |
Q |
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| T |
47241714 |
ccaaaaatatatttgtcagtcatgaaccacattcagtcattcactaagttattcacactgcatcagtcttcttcaaagtaataatttggtatctctggcg |
47241813 |
T |
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| Q |
105 |
agctagggaggtttgccacatatttgaactgttccagacaatgagttcaagtcaaccaacttgcattaataagaattaactataacaaatgaaatgttaa |
204 |
Q |
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| T |
47241814 |
agctagggaggtttgccacatatttgaactgttccagacaatgagttcaagtcaaccaacttgcattaataagaattaactataacaaatgaaatgttaa |
47241913 |
T |
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| Q |
205 |
aagttaaaacaatcaccttttgttgcttgtatttctccctaac |
247 |
Q |
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| T |
47241914 |
aagttaaaacaatcaccttttgttgcttgtatttctccctaac |
47241956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 71 - 238
Target Start/End: Original strand, 47248229 - 47248396
Alignment:
| Q |
71 |
tcttcttcaaagtaataatttggtatctctggcgagctagggaggtttgccacatatttgaactgttccagacaatgagttcaagtcaaccaacttgcat |
170 |
Q |
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| T |
47248229 |
tctttttcaaagtaatgatttggtatctctggcgatgaaggcaggtttgccacacattttaactgttccagaaaacgatttcaagtcaatgaacttgcaa |
47248328 |
T |
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| Q |
171 |
taataagaattaactataacaaatgaaatgttaaaagttaaaacaatcaccttttgttgcttgtattt |
238 |
Q |
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| T |
47248329 |
taataagaaataactataacaaaagaattgtcaaaagttaaaacaatcaccttgttctgcttgtattt |
47248396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 179
Target Start/End: Original strand, 47253027 - 47253135
Alignment:
| Q |
71 |
tcttcttcaaagtaataatttggtatctctggcgagctagggaggtttgccacatatttgaactgttccagacaatgagttcaagtcaaccaacttgcat |
170 |
Q |
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| T |
47253027 |
tcttctacaaagtaatgatttggtatttctggagatgaaggaaggtttgccacattcttgaactgtttcaaacaaacacttcaagtcaatcaacttgcaa |
47253126 |
T |
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| Q |
171 |
taataagaa |
179 |
Q |
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| T |
47253127 |
taataagaa |
47253135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 209 - 247
Target Start/End: Original strand, 47253168 - 47253206
Alignment:
| Q |
209 |
taaaacaatcaccttttgttgcttgtatttctccctaac |
247 |
Q |
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| T |
47253168 |
taaaacaatcaccttgtgttgcttgtatttctccctaac |
47253206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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