View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13660_high_4 (Length: 407)

Name: NF13660_high_4
Description: NF13660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13660_high_4
NF13660_high_4
[»] chr5 (1 HSPs)
chr5 (17-407)||(13722399-13722786)


Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 17 - 407
Target Start/End: Complemental strand, 13722786 - 13722399
Alignment:
Q  17 aaatcccatgactagtttggtaattcctagcccagatatcaagtctattacgcgtttttgcataggttcatcgaatttctcaacttcaataatttctgcc 116  Q
    ||||||||||||||||||||||||| ||||| ||| ||||||||||||||| |||||||||||||||||||| ||||||| |||||||| |||||||||     
T  13722786 aaatcccatgactagtttggtaatttctagctcagttatcaagtctattacacgtttttgcataggttcatcaaatttcttaacttcaagaatttctgct 13722687  T
Q  117 gacacctgcatacaatatgcaattgaacttcgtttcaaagattattt-gctttgagaaaacattttctattttcatacgtg-tttcttcgaatacacaag 214  Q
    ||||||||||     ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||     
T  13722686 gacacctgcac----tatgcaattcaacttcgtttcaaagattattttgctttgagaaaacattttctattttcatacgtggtttcttcgaatatacaaa 13722591  T
Q  215 tttgccaacttatttcatttaatttccttatttcaaagaaatgaaaaaacaattnnnnnnngaacnnnnnnnnatatgatatgagcaattgaactttgtt 314  Q
     |||||| |||||||||||| |||||||||| ||||||||||||||||||||||       ||||        |||||||||||||||||||||||||||    
T  13722590 attgccaccttatttcattttatttccttatctcaaagaaatgaaaaaacaattaaaaaaagaac-tttttttatatgatatgagcaattgaactttgtt 13722492  T
Q  315 attcaagaactaagatgaacacaccttgccacaaaaagcaatatatttagaaaacaacttcttgattctctctttctcatctttccttaaagc 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13722491 attcaagaactaagatgaacacaccttgccacaaaaagcaatatatttagaaaacaacttcttgattctctctttctcatctttccttaaagc 13722399  T

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