View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13660_high_6 (Length: 373)

Name: NF13660_high_6
Description: NF13660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13660_high_6
NF13660_high_6
[»] chr3 (16 HSPs)
chr3 (12-357)||(8988288-8988633)
chr3 (12-344)||(8962504-8962846)
chr3 (12-250)||(8957064-8957299)
chr3 (12-267)||(8965219-8965484)
chr3 (64-201)||(9101223-9101360)
chr3 (64-205)||(9029108-9029249)
chr3 (74-205)||(8746959-8747090)
chr3 (74-205)||(9034625-9034756)
chr3 (38-205)||(9023416-9023586)
chr3 (64-204)||(9026149-9026289)
chr3 (77-209)||(9108802-9108934)
chr3 (68-209)||(8755580-8755721)
chr3 (74-211)||(9019293-9019430)
chr3 (74-204)||(9015428-9015558)
chr3 (71-214)||(9112109-9112252)
chr3 (299-357)||(8965548-8965606)


Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 12 - 357
Target Start/End: Original strand, 8988288 - 8988633
Alignment:
Q  12 catcatcatcagctacctcaatcaagttcttcttcatttttgtcatcgtattcgccgccgtagcctcggcccaagatcttagtccctcgttggctccagc 111  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  8988288 catcatcatcagctaccacaatcaagttcttcttcatttttgtcatcgtattcgccgccgtagcctcggcccaagaccttagtccctcgttgtctccagc 8988387  T
Q  112 accaggtcctgacgctggagctgccagttctgctacaagttctgtggctatgattggagcttcaattgtactgtcaatgcttgctatcttcaagaactga 211  Q
    |||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||    
T  8988388 accaggtcctgacgttggagctgccagttctgctacaagttatgtggctatgatcggagcttcaatcgtactgtcaatgctcgctatcttcaagaactga 8988487  T
Q  212 gaaaattgaaccattttgttggaacactattaattattttttgagacatgattcttactgttttactatatagatatggttatcatgagttcatctatgt 311  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  8988488 gaaaattgagccattttgttggaacactattaattattttttgagacatgattcttactcttttactatatagatatggttatcacgagttcatctatgt 8988587  T
Q  312 atagtgaaagtaagtgagatttttattgaatttatttatgtattta 357  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  8988588 atagtgaaagtaagagagatttttattgaatttatttatgtattta 8988633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 12 - 344
Target Start/End: Original strand, 8962504 - 8962846
Alignment:
Q  12 catcatcatcagctacctcaatcaagttcttcttcatttttgtcatcgtattcgccgccgtagcctcggcccaagatcttagtccctcgttggctccagc 111  Q
    |||||||||| |||||| |||| ||||| |||||   |||||||||||| || ||||| || |||||||||||||| |||||||||||||| ||||||||    
T  8962504 catcatcatctgctaccacaatgaagttgttctttggttttgtcatcgtgtttgccgctgtggcctcggcccaagaccttagtccctcgttagctccagc 8962603  T
Q  112 accaggtcctgacgctggagctgccagttctgctacaagttctgtggctatgattggagcttcaattgtactgtcaatgcttgctatcttcaagaactga 211  Q
    |||||||||||| ||||||| |||| | |||| | || |||||||||||||||| |||||||||||||| || |||||||| |||||||||||||| |||    
T  8962604 accaggtcctgatgctggagttgccggatctgttgcaggttctgtggctatgatcggagcttcaattgtgctttcaatgctcgctatcttcaagaattga 8962703  T
Q  212 gaaaattgaa----------ccattttgttggaacactattaattattttttgagacatgattcttactgttttactatatagatatggttatcatgagt 301  Q
     |||||| ||           |||||||| ||||||||||||||||||| |||| |||||||||||  |||||| | |||| ||| || |||||| ||||    
T  8962704 aaaaattaaagactatgaggtcattttgtgggaacactattaattatttcttgacacatgattcttgatgtttttcaatattgatctgattatcacgagt 8962803  T
Q  302 tcatctatgtatagtgaaagtaagtgagatttttattgaattt 344  Q
    ||||||||||||||||| ||| || ||||||||||||| ||||    
T  8962804 tcatctatgtatagtgagagtgagagagatttttattgtattt 8962846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 12 - 250
Target Start/End: Original strand, 8957064 - 8957299
Alignment:
Q  12 catcatcatcagctacctcaatcaagttcttcttcatttttgtcatcgtattcgccgccgtagcctcggcccaagatcttagtccctcgttggctccagc 111  Q
    ||||||||||||||||| |||| ||||| ||| || ||||||||||||||||| || |||| |||||||||||||| |||||||| ||||| ||||||||    
T  8957064 catcatcatcagctaccacaatgaagttgttcgtcgtttttgtcatcgtattcaccaccgtggcctcggcccaagaccttagtccgtcgttagctccagc 8957163  T
Q  112 accaggtcctgacgctggagctgccagttctgctacaagttctgtggctatgattggagcttcaattgtactgtcaatgcttgctatcttcaagaactga 211  Q
    ||| ||||||||||||||||||||| | | || ||||||||||||||||||||| |||||||||||||| ||||||||| | || || |||||||||| |    
T  8957164 acccggtcctgacgctggagctgccggatttgttacaagttctgtggctatgatcggagcttcaattgtgctgtcaatggtcgccattttcaagaactaa 8957263  T
Q  212 gaaaattgaaccattttgttggaacactattaattattt 250  Q
    || || |   ||||||||| |||||||||||||||||||    
T  8957264 gagaagt---ccattttgtgggaacactattaattattt 8957299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 12 - 267
Target Start/End: Original strand, 8965219 - 8965484
Alignment:
Q  12 catcatcatcagctacctcaatcaagttcttcttcatttttgtcatcgtattcgccgccgtagcctcggcccaagatcttagtccctcgttggctccagc 111  Q
    ||||||||||| ||||| |||| || || |||||| ||||||||||||| || ||| | || |||||||||||||| |||||||| ||||||||||||||    
T  8965219 catcatcatcaactaccacaatgaaattgttcttcgtttttgtcatcgtctttgccacagtggcctcggcccaagaccttagtccgtcgttggctccagc 8965318  T
Q  112 accaggtcctgacgctggagctgccagttctgctacaagttctgtggctatgattggagcttcaattgtactgtcaatgcttgctatcttcaagaactga 211  Q
    |||| |||||||||||||||||||| | |||| |||||||||| |||| ||||| |||||||||||||| ||||||||||| || |||||||||||||||    
T  8965319 accaagtcctgacgctggagctgccggatctgttacaagttctatggcaatgatcggagcttcaattgtgctgtcaatgctcgcaatcttcaagaactga 8965418  T
Q  212 gaaaattgaa----------ccattttgttggaacactattaattattttttgagacatgattctt 267  Q
    ||||||| ||          ||||||||| ||||||||||| ||||||| |||| |||||||||||    
T  8965419 gaaaattaaagactatgaggccattttgtgggaacactattgattatttcttgacacatgattctt 8965484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 64 - 201
Target Start/End: Original strand, 9101223 - 9101360
Alignment:
Q  64 cgccgccgtagcctcggcccaagatcttagtccctcgttggctccagcaccaggtcctgacgctggagctgccagttctgctacaagttctgtggctatg 163  Q
    |||| |||| ||||| |||||| | || |||||||||||||||||||||||||| ||||| |||||||||||  |||||| ||||||||| |||||||||    
T  9101223 cgccaccgtggcctctgcccaaaacctcagtccctcgttggctccagcaccaggccctgatgctggagctgctggttctgttacaagttcagtggctatg 9101322  T
Q  164 attggagcttcaattgtactgtcaatgcttgctatctt 201  Q
    || |||| |||||||||| |||||||||| || |||||    
T  9101323 atcggagtttcaattgtattgtcaatgctcgccatctt 9101360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 64 - 205
Target Start/End: Original strand, 9029108 - 9029249
Alignment:
Q  64 cgccgccgtagcctcggcccaagatcttagtccctcgttggctccagcaccaggtcctgacgctggagctgccagttctgctacaagttctgtggctatg 163  Q
    |||| |||| ||||| |||||||| |||||||| |||||||||||||||||||||||||| |||||||||||  | |||  ||||||||| | |||||||    
T  9029108 cgccaccgtggcctctgcccaagaccttagtccttcgttggctccagcaccaggtcctgatgctggagctgctggatctattacaagttcagcggctatg 9029207  T
Q  164 attggagcttcaattgtactgtcaatgcttgctatcttcaag 205  Q
    || |||| |||||||||  |||||||||| || |||||||||    
T  9029208 atcggagtttcaattgtgttgtcaatgctcgccatcttcaag 9029249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 74 - 205
Target Start/End: Original strand, 8746959 - 8747090
Alignment:
Q  74 gcctcggcccaagatcttagtccctcgttggctccagcaccaggtcctgacgctggagctgccagttctgctacaagttctgtggctatgattggagctt 173  Q
    ||||| |||||||| || |||||||||||||||||||||||||||||||| | ||||||||   | |||| ||||| ||| |||||||||||||||| ||    
T  8746959 gcctctgcccaagacctcagtccctcgttggctccagcaccaggtcctgatgttggagctgttggatctgttacaaattcagtggctatgattggagttt 8747058  T
Q  174 caattgtactgtcaatgcttgctatcttcaag 205  Q
    |||||||  |||||||||| || |||||||||    
T  8747059 caattgtgttgtcaatgctcgccatcttcaag 8747090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 74 - 205
Target Start/End: Original strand, 9034625 - 9034756
Alignment:
Q  74 gcctcggcccaagatcttagtccctcgttggctccagcaccaggtcctgacgctggagctgccagttctgctacaagttctgtggctatgattggagctt 173  Q
    ||||| |||||||| |||||||| ||||||||||| |||||||||||||| |||||||||||  | |||| | ||||||| ||||||||||| |||| ||    
T  9034625 gcctctgcccaagaccttagtccttcgttggctccggcaccaggtcctgatgctggagctgctggatctgttgcaagttcggtggctatgatcggagttt 9034724  T
Q  174 caattgtactgtcaatgcttgctatcttcaag 205  Q
    |||||||  |||||||||| || |||||||||    
T  9034725 caattgtgttgtcaatgctcgccatcttcaag 9034756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 38 - 205
Target Start/End: Original strand, 9023416 - 9023586
Alignment:
Q  38 ttcttcttcatttttgtcatcgtattcgccgcc---gtagcctcggcccaagatcttagtccctcgttggctccagcaccaggtcctgacgctggagctg 134  Q
    |||| |||| |||| |||||| | |||||||||   || ||||| |||||||| |||||||||||||||||||| |||||||||||||| ||||||||||    
T  9023416 ttctccttctttttggtcatcatcttcgccgccacagtggcctctgcccaagaccttagtccctcgttggctccggcaccaggtcctgatgctggagctg 9023515  T
Q  135 ccagttctgctacaagttctgtggctatgattggagcttcaattgtactgtcaatgcttgctatcttcaag 205  Q
    |  | |||| ||||||||| ||||||||| | |||  |||  ||||| |||||||||| || |||||||||    
T  9023516 ctggatctgttacaagttcagtggctatggtcggaatttcggttgtattgtcaatgctcgccatcttcaag 9023586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 64 - 204
Target Start/End: Original strand, 9026149 - 9026289
Alignment:
Q  64 cgccgccgtagcctcggcccaagatcttagtccctcgttggctccagcaccaggtcctgacgctggagctgccagttctgctacaagttctgtggctatg 163  Q
    |||| |||| ||||| ||||||||||||||||| ||||||||||||||||||||| |||| ||||||| |||  | |||| ||||||||| ||||| |||    
T  9026149 cgccaccgtggcctctgcccaagatcttagtccttcgttggctccagcaccaggttctgatgctggagttgctggatctgttacaagttcagtggcaatg 9026248  T
Q  164 attggagcttcaattgtactgtcaatgcttgctatcttcaa 204  Q
    || |||| |||| ||||| |||||||| | || ||||||||    
T  9026249 atcggagtttcagttgtattgtcaatgatcgccatcttcaa 9026289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 77 - 209
Target Start/End: Original strand, 9108802 - 9108934
Alignment:
Q  77 tcggcccaagatcttagtccctcgttggctccagcaccaggtcctgacgctggagctgccagttctgctacaagttctgtggctatgattggagcttcaa 176  Q
    ||||| ||||| || |||||||| |||||||||||| |||||||||| |  ||||||||| | |||| ||||||||| ||||| ||||| ||||||||||    
T  9108802 tcggctcaagacctcagtccctcattggctccagcatcaggtcctgatgtcggagctgccggatctgttacaagttcagtggccatgatcggagcttcaa 9108901  T
Q  177 ttgtactgtcaatgcttgctatcttcaagaact 209  Q
    ||||  |||||||||||||  |||| |||||||    
T  9108902 ttgtcttgtcaatgcttgcactcttgaagaact 9108934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 68 - 209
Target Start/End: Original strand, 8755580 - 8755721
Alignment:
Q  68 gccgtagcctcggcccaagatcttagtccctcgttggctccagcaccaggtcctgacgctggagctgccagttctgctacaagttctgtggctatgattg 167  Q
    ||||| || ||||| ||||| || ||||||||||||||||| ||||||| |||||| || || |||||  | |||| ||||| ||| || ||||||||||    
T  8755580 gccgtggcttcggctcaagacctcagtccctcgttggctccggcaccagatcctgatgccggtgctgctggatctgttacaaattcagttgctatgattg 8755679  T
Q  168 gagcttcaattgtactgtcaatgcttgctatcttcaagaact 209  Q
    ||||||| ||| |  |||| ||||| || |||||||||||||    
T  8755680 gagcttcgattattttgtctatgctcgccatcttcaagaact 8755721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 74 - 211
Target Start/End: Original strand, 9019293 - 9019430
Alignment:
Q  74 gcctcggcccaagatcttagtccctcgttggctccagcaccaggtcctgacgctggagctgccagttctgctacaagttctgtggctatgattggagctt 173  Q
    |||||||| ||||| ||||||||||| |  ||||| |||||||||||||| | ||| |||    | |||| ||| ||||| || |||||||| |||||||    
T  9019293 gcctcggctcaagaccttagtccctcatccgctccggcaccaggtcctgatgttggggcttgtggatctgttacgagttcagttgctatgatcggagctt 9019392  T
Q  174 caattgtactgtcaatgcttgctatcttcaagaactga 211  Q
    |||||||  ||||||||||||| ||||| |||||||||    
T  9019393 caattgtgttgtcaatgcttgccatcttgaagaactga 9019430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 74 - 204
Target Start/End: Original strand, 9015428 - 9015558
Alignment:
Q  74 gcctcggcccaagatcttagtccctcgttggctccagcaccaggtcctgacgctggagctgccagttctgctacaagttctgtggctatgattggagctt 173  Q
    |||||||| ||||| || || ||||||||| |||| |||||||||||||| || ||||| ||  | | || ||||| ||| ||| ||||| |||||| ||    
T  9015428 gcctcggctcaagacctcagcccctcgttgtctccggcaccaggtcctgatgccggagcagctggatatgttacaaattcagtgactatggttggagttt 9015527  T
Q  174 caattgtactgtcaatgcttgctatcttcaa 204  Q
    |||||||| |||||||||| || ||||||||    
T  9015528 caattgtattgtcaatgctcgccatcttcaa 9015558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 71 - 214
Target Start/End: Original strand, 9112109 - 9112252
Alignment:
Q  71 gtagcctcggcccaagatcttagtccctcgttggctccagcaccaggtcctgacgctggagctgccagttctgctacaagttctgtggctatgattggag 170  Q
    |||| |||||||||||| || ||||||||||||||||| |||||||  |||||  | |||||||   | |||  ||||| | | ||||||||||| ||||    
T  9112109 gtagtctcggcccaagacctcagtccctcgttggctccggcaccagcacctgataccggagctgttggatctcttacaaatccagtggctatgatgggag 9112208  T
Q  171 cttcaattgtactgtcaatgcttgctatcttcaagaactgagaa 214  Q
    |||  |||||  ||||||||||||||||||| ||| | ||||||    
T  9112209 ctttgattgtgttgtcaatgcttgctatctttaagcattgagaa 9112252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 299 - 357
Target Start/End: Original strand, 8965548 - 8965606
Alignment:
Q  299 agttcatctatgtatagtgaaagtaagtgagatttttattgaatttatttatgtattta 357  Q
    |||||||||||||||| ||| ||| || ||||||||||||| |||||||||||||||||    
T  8965548 agttcatctatgtatattgagagtgagagagatttttattgtatttatttatgtattta 8965606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University