View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13660_high_7 (Length: 353)
Name: NF13660_high_7
Description: NF13660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13660_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 64 - 336
Target Start/End: Complemental strand, 27253757 - 27253485
Alignment:
| Q |
64 |
aactggatatcatgcattacgatttaccattactactctcctcaaatgcaattgcaaccaatctccatcgacgtcgttacaacccttacagtcaaacgtg |
163 |
Q |
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| T |
27253757 |
aactggatatcatgcattacgatttaccatcactactctcctcaaatgcaattgcaaccaatctccatcgacgtcgttacaacccttacagtcaaacgtg |
27253658 |
T |
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| Q |
164 |
agctccaatttacaaatatccatcttcggccatagttggcctttccttgtcattccgatcccaaactgtatcatatttctaccctcgctagatcctgtaa |
263 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
27253657 |
agctccaatttacaaatatccatcttcggccatagttggcctttccttgtcattccaatcccaaactgtatcatatttctacccccgctagatcctgtaa |
27253558 |
T |
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| Q |
264 |
accacaaagggttgcgataagaatgaaataagtccactgcacacttacgagttggatcaataacgatccaact |
336 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||| |
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| T |
27253557 |
accacaaagggttgcgataagaatgaaacaagtccactgcacacttacgagttggatcgataactatccaact |
27253485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 282 - 336
Target Start/End: Complemental strand, 27246759 - 27246705
Alignment:
| Q |
282 |
aagaatgaaataagtccactgcacacttacgagttggatcaataacgatccaact |
336 |
Q |
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||||| |||| ||||||||||||||||||||||||||||| |||| ||||||||| |
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| T |
27246759 |
aagaaggaaacaagtccactgcacacttacgagttggatcgataaggatccaact |
27246705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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