View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13660_low_10 (Length: 387)
Name: NF13660_low_10
Description: NF13660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13660_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 78 - 352
Target Start/End: Complemental strand, 15449413 - 15449140
Alignment:
| Q |
78 |
tgaaaatgtatgttatattatgatactatgttcgactagattttacattagttattatgttttgttgaaaattaatgttactcatgccccaattcaattn |
177 |
Q |
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| T |
15449413 |
tgaaaatgtatgttatgttatcatattatgttcgactagtttttacattagatattatattttgttgaaaattaatgttactcatgccccaattcaatta |
15449314 |
T |
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| Q |
178 |
nnnnnncacatctatgtgaagagttaaagtaggagtgtgataagaataaaagatagatttattcattaaatatgtttatcattcaaatcggcatgcatat |
277 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15449313 |
aaaaaa-acatctatgtgaagagttaaagtaggagtatgataagaataaaagatagatttattcattaaatatgtttatcattcaaatcggcatgcatat |
15449215 |
T |
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| Q |
278 |
ctatcttagtgaaactcttaattcaaaagagaatatcttccttccaaaagatacatttatttaactatatataac |
352 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
15449214 |
ctatcttaatgaaactcttaattcaaaagagaatatcttccttccaaaagatacatttatttaactatacataac |
15449140 |
T |
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