View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13660_low_16 (Length: 257)
Name: NF13660_low_16
Description: NF13660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13660_low_16 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 19 - 257
Target Start/End: Complemental strand, 47242299 - 47242061
Alignment:
| Q |
19 |
ccaatttgcagtttgaatatctgtgcaattatcttgccgatataagcctgctggactatgaatgtataagattcatgccttcaattgtggctgcttctgt |
118 |
Q |
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| T |
47242299 |
ccaatttgcagtttgaatatctgtgcaattatcttgccgatataagcctgctggactatgaatgtataagattcatgccttcaattgtggctgcttctgt |
47242200 |
T |
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| Q |
119 |
tatctttcttgctagatttattctccggcctggagtacatccttgggtaaatatttgatgttattgattttaatctatttgaattctaaaaaacaataat |
218 |
Q |
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| T |
47242199 |
tatctttcttgctagatttattctccggcctggagtacatccttgggtaaatatttgatgttattgattttaatctatttgaattctaaaaaacaataat |
47242100 |
T |
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| Q |
219 |
atttcaaggtacttaatgttgcgaatctatttcagactt |
257 |
Q |
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| T |
47242099 |
atttcaaggtacttaatgttgcgaatctatttcagactt |
47242061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 19 - 182
Target Start/End: Complemental strand, 47248744 - 47248581
Alignment:
| Q |
19 |
ccaatttgcagtttgaatatctgtgcaattatcttgccgatataagcctgctggactatgaatgtataagattcatgccttcaattgtggctgcttctgt |
118 |
Q |
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| T |
47248744 |
ccaatttgcagtttgaattcctgtgcagctatcttgctgacttaagcttgttggactatgagtgtacaaggttcttgccttctgttgtggctgcatcggt |
47248645 |
T |
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| Q |
119 |
tatctttcttgctagatttattctccggcctggagtacatccttgggtaaatatttgatgttat |
182 |
Q |
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| T |
47248644 |
tatatttcttgccagatttattatccggcctggagcacatccttgggtaaatacttgttgttat |
47248581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 33 - 182
Target Start/End: Complemental strand, 47253545 - 47253396
Alignment:
| Q |
33 |
gaatatctgtgcaattatcttgccgatataagcctgctggactatgaatgtataagattcatgccttcaattgtggctgcttctgttatctttcttgcta |
132 |
Q |
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| T |
47253545 |
gaatttctgtgtaactatcttgctgagctaagcttgatagactatgaatgtataagattcttgccttctatggtggctgcatctgttatatttcttgcta |
47253446 |
T |
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| Q |
133 |
gatttattctccggcctggagtacatccttgggtaaatatttgatgttat |
182 |
Q |
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| T |
47253445 |
gattcataatctgtcctggagtacatcctttggtaaatatttgatgttat |
47253396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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