View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13660_low_19 (Length: 242)
Name: NF13660_low_19
Description: NF13660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13660_low_19 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 161; Significance: 5e-86; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 20 - 204
Target Start/End: Original strand, 41956549 - 41956732
Alignment:
| Q |
20 |
caaacaccatgatgttgcatatgatttgatatcgtgaactcatcctgatagctaaaaagctacaacaatataatggaatttaatatctatcaaggcaaag |
119 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41956549 |
caaacaccatgatgttgcatatgatttgaaatcgtgaactca-cctgatagctaaaaagctacaacaatataatggaatttaatatctatcaaggcaaag |
41956647 |
T |
|
| Q |
120 |
gtggaagtgaagactctttaagcctgtgtatgcaagagctcacaaccacatataactcccaagtcccaaccagccatattcttcg |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
41956648 |
gtggaagtgaagactctttaagcctgtgtatgcaagagctcacaaccacatataactcccaagtcccaaccattcatattattcg |
41956732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 50 - 204
Target Start/End: Original strand, 5597628 - 5597782
Alignment:
| Q |
50 |
atcgtgaactcatcctgatagctaaaaagctacaacaatataatggaatttaatatctatcaaggcaaaggtggaagtgaagactctttaagcctgtgta |
149 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5597628 |
atcgtgaactcatcctgatagctaaaaagctacaacaatataatggaatttaatatctatcaaggcaaaggtggaagtgaagactctttaagcctgtgta |
5597727 |
T |
|
| Q |
150 |
tgcaagagctcacaaccacatataactcccaagtcccaaccagccatattcttcg |
204 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
5597728 |
tgcaacagctcacaaccacatataactcccaagtcccaaccatccatattattcg |
5597782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 50 - 204
Target Start/End: Original strand, 40635878 - 40636032
Alignment:
| Q |
50 |
atcgtgaactcatcctgatagctaaaaagctacaacaatataatggaatttaatatctatcaaggcaaaggtggaagtgaagactctttaagcctgtgta |
149 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40635878 |
atcgtgaactcatcctgatagctaaaaagctacaacaatataatggaatttaatatctatcaaggcaaaggtggaagtgaagactctttaagcctgtgta |
40635977 |
T |
|
| Q |
150 |
tgcaagagctcacaaccacatataactcccaagtcccaaccagccatattcttcg |
204 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
40635978 |
tgcaacagctcacaaccacatataactcccaagtcccaaccatccatattattcg |
40636032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 99 - 204
Target Start/End: Original strand, 810420 - 810525
Alignment:
| Q |
99 |
ttaatatctatcaaggcaaaggtggaagtgaagactctttaagcctgtgtatgcaagagctcacaaccacatataactcccaagtcccaaccagccatat |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
810420 |
ttaatatctatcaaggcaaaggtggaagtgaagactctttaagcctgtgtatgcaagagctcacaaccacatataactcccaagtcccaaccatccatat |
810519 |
T |
|
| Q |
199 |
tcttcg |
204 |
Q |
| |
|
| |||| |
|
|
| T |
810520 |
tattcg |
810525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University