View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13660_low_2 (Length: 698)
Name: NF13660_low_2
Description: NF13660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13660_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 590; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 590; E-Value: 0
Query Start/End: Original strand, 76 - 681
Target Start/End: Complemental strand, 13673207 - 13672602
Alignment:
| Q |
76 |
ggtgctactaaaagtacctcggcttcataattatcattgagtaatatgtttgaggctttgatgtccctgtgaatgattcgtctgggacaatcttcatgaa |
175 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |
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| T |
13673207 |
ggtgctactaaaagtacctcggcttcataattatcattgagtaatatgtttgaggctttgatatccctgtgaatgattcgtctgggacaatcttcatgga |
13673108 |
T |
|
| Q |
176 |
gataatgcaacccctcggctactccgataaccaccttgtaccttgtcttccactctaagcattcagaacctaacaggttgaacataattgtgttacctat |
275 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
13673107 |
gataatgcaacccctcggctactccgataaccaccttgtaccttgtcttccactctaagcattcagaacctaacaggttgaatataattgtgttacctat |
13673008 |
T |
|
| Q |
276 |
atcaatgctaatataaaataacaagggatagaaaatggagaagtaagatggaagcagcgctgcgcaccaaataacaaagaagaaagacttccatatggtg |
375 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13673007 |
atcaatgctaatataaaataacaagggatagaaaatggagaagtaagatggaagcagcgctgcgcaccaaataacaaagaagaaagacttccatatggtg |
13672908 |
T |
|
| Q |
376 |
ctaattgtaggacaaagtagaggccgcggtcgataccaaacccgacaaggcgtgtagcgttcgggtgattaacgtgtgcaatgattccaagctctgttaa |
475 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13672907 |
ctaattgtaggacaaagtagaggccgcggtcgataccaaacccaacaaggcgtgtagcgttcgggtgattaacgtgtgcaatgattccaagctctgttaa |
13672808 |
T |
|
| Q |
476 |
gaaatcgcctgctctatccgcgaaatccttgtcgttcttcattagtctctttactgcgacaacttgaccatctgataagtgtcctttgtatacttcagca |
575 |
Q |
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| T |
13672807 |
gaaatcgcctgctctatccgcgaaatccttgtcgttcttcattagtctctttactgcgacaacttgaccatctgataagtgtcctttgtatacttcagca |
13672708 |
T |
|
| Q |
576 |
tgaccaccttttccaatcaagttctctatgtagcaaaaataccaaacattataagttataataattgttatattatatcaagagttttgaataactgtta |
675 |
Q |
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| T |
13672707 |
tgaccaccttttccaatcaagttctctatgtagcaaaaataccaaacattataagttataataattgttatattatatcaagagttttgaataactgtta |
13672608 |
T |
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| Q |
676 |
ctgatg |
681 |
Q |
| |
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|||||| |
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| T |
13672607 |
ctgatg |
13672602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 89 - 246
Target Start/End: Complemental strand, 28532201 - 28532044
Alignment:
| Q |
89 |
gtacctcggcttcataattatcattgagtaatatgtttgaggctttgatgtccctgtgaatgattcgtctgggacaatcttcatgaagataatgcaaccc |
188 |
Q |
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||||||| ||||||| || || ||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||| ||| ||||| ||||| || |
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| T |
28532201 |
gtacctctgcttcatcatcattgttgagtaatatgtttgaggctttgatgtctctgtgaatgattcttcttggacaatcttgatggagatattgcaaacc |
28532102 |
T |
|
| Q |
189 |
ctcggctactccgataaccaccttgtaccttgtcttccactctaagcattcagaacct |
246 |
Q |
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| |||||| || | | |||||| ||||| | |||||| | || |||||||||||| |
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| T |
28532101 |
tttggctaccccaactgctaccttgaaccttatattccacgccaaacattcagaacct |
28532044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 513 - 603
Target Start/End: Complemental strand, 28531365 - 28531275
Alignment:
| Q |
513 |
ttcattagtctctttactgcgacaacttgaccatctgataagtgtcctttgtatacttcagcatgaccaccttttccaatcaagttctcta |
603 |
Q |
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|||||||| ||||||||||| ||||| ||||| | |||| |||||||||| ||||| |||||||||||||||||||||| |||||||| |
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| T |
28531365 |
ttcattagcctctttactgctacaaccattccatcaggtaagcgtcctttgtacacttctgcatgaccaccttttccaatcatgttctcta |
28531275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 558 - 595
Target Start/End: Original strand, 40114763 - 40114800
Alignment:
| Q |
558 |
cctttgtatacttcagcatgaccaccttttccaatcaa |
595 |
Q |
| |
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|||||||| |||||||||| |||||||||||||||||| |
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| T |
40114763 |
cctttgtacacttcagcataaccaccttttccaatcaa |
40114800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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