View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13660_low_3 (Length: 600)
Name: NF13660_low_3
Description: NF13660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13660_low_3 |
 | |
|
| [»] scaffold0045 (1 HSPs) |
| | |
|
| [»] scaffold0035 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 496; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 18 - 557
Target Start/End: Complemental strand, 17831763 - 17831224
Alignment:
| Q |
18 |
atgaagaagaaggtgaaagtgaaaagatgaacaattttgggaatacctgaacattcaatacctccgatttttgaaaatctgagtcatcttaagcgttgga |
117 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
17831763 |
atgatgaagaaggtgaaagtgaaaagatgaacaattttgggaatacctgaacattcaatacctccgattttttaaaatctgagtcatcttaagcgttgga |
17831664 |
T |
|
| Q |
118 |
gagggagataaactgagaatagtgaagaatgattgactccataaggattctaggggatgaaagtgaaactgagaactaaacttcagagaaacaaaattca |
217 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17831663 |
gagggagataaactgagaataatgaagaatgattgactccataaggattctaggggatgaaagtgaaactgagaactaaacttcagagaaacaaaattca |
17831564 |
T |
|
| Q |
218 |
attcatagaaagggtaaaactattaccttgagagaaaattcacaaaatcaacaaatctgaacaacgatggaataaaacattaagcatgatggatgtttaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17831563 |
attcatagaaagggtaaaactattaccttgagagaaaattcacaaaatcaacaaatctgaacaacgatggaataaaacattaagcatgatggatgtttaa |
17831464 |
T |
|
| Q |
318 |
gatttagcaacagaagaagcattgttgatgaagggagagagaaacgatgaaagatttcggttcatattacgatgtcatctttctctttctctggagaagt |
417 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
17831463 |
gatttagcaacagaagaagcatcgtcgatgaagggagagagaaacgacgaaagatttcggttcatattacgatgacatctttctctttctctggagaagt |
17831364 |
T |
|
| Q |
418 |
tgaattgtgatggtttctgtgggtcggaatcacgattgcggcggagatgaaatggccaaatttggcgccgtcgcgggagagagaagagggactgaaaatg |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||| |
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|
| T |
17831363 |
tgaattgtgatggtttctgtgggtcggaatcacggttgcggcggagatgaaatggccagatttggcgccgccacgggagagagaagagggactgaaaatg |
17831264 |
T |
|
| Q |
518 |
gaagatgaatttctcagatcagagaaaaatggcgtgatag |
557 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17831263 |
gaagatgaatttctcagatcagagaaaaatggcgtgatag |
17831224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 377; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 22 - 554
Target Start/End: Complemental strand, 7135793 - 7135282
Alignment:
| Q |
22 |
agaagaaggtgaaagtgaaaagatgaacaattttgggaatacctgaacattcaatacctccgatttttgaaaatctgagtcatcttaagcgttggagagg |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
7135793 |
agaagaaggtgaaagtgaaaagatgaacaattttgggaatacctgaacattcaatacatccgatttttgaaaatcttagtcatctcaagcgttggagagg |
7135694 |
T |
|
| Q |
122 |
gagataaactgagaatagtgaagaatgattgactccataaggattctaggggatgaaagtgaaactgagaactaaacttcagagaaacaaaattcaattc |
221 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7135693 |
gagaaaaaatgagaatagtgaagaatgattgactccataaggattctaggggatgaaagtgaaactgagaactaaacttcagagaaacaaaa-------- |
7135602 |
T |
|
| Q |
222 |
atagaaagggtaaaactattaccttgagagaaaattcacaaaatcaacaaatctgaacaacgatggaataaaacattaagcatgatggatgtttaagatt |
321 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||| ||||| |
|
|
| T |
7135601 |
-------------aactattaccttgagagaaaattcacaaaatcaacaaatctgaacaacgatggaatagagcattaagtatgatggatgtttgagatt |
7135515 |
T |
|
| Q |
322 |
tagcaacagaagaagcattgttgatgaagggagagagaaacgatgaaagatttcggttcatattacgatgtcatctttctctttctctggagaagttgaa |
421 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
7135514 |
tagcaacagaagaagcattgttgatgaagggagagagaaacgacggaagatttcggttcatattacgatgacatctttctctttctctggagaagttgaa |
7135415 |
T |
|
| Q |
422 |
ttgtgatggtttctgtgggtcggaatcacgattgcggcggagatgaaatggccaaatttggcgccgtcgcgggagagagaagagggactgaaaatggaag |
521 |
Q |
| |
|
||||||||||||||||||||| |||||||| || |||||||||||||||||||| |||||| |||| | ||||||||||||||||||||||||||||| |
|
|
| T |
7135414 |
ttgtgatggtttctgtgggtcagaatcacggttacggcggagatgaaatggccagatttggtgccgctacaggagagagaagagggactgaaaatggaag |
7135315 |
T |
|
| Q |
522 |
atgaatttctcagatcagagaaaaatggcgtga |
554 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |
|
|
| T |
7135314 |
atgaatttctcatatcagagaaaaatggcgtga |
7135282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 137 - 264
Target Start/End: Original strand, 52525386 - 52525515
Alignment:
| Q |
137 |
tagtgaagaatgattgactccataaggattctaggggatgaaagtgaaactgagaactaaacttcagagaaacaaaattcaatt--catagaaagggtaa |
234 |
Q |
| |
|
|||| |||||||||||||||||||| | |||||||||||||||||||||||||||||| || ||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
52525386 |
tagtaaagaatgattgactccataaaggttctaggggatgaaagtgaaactgagaactgaaattcagagaaacgaaattcaatttctatagaaagggtaa |
52525485 |
T |
|
| Q |
235 |
aactattaccttgagagaaaattcacaaaa |
264 |
Q |
| |
|
||| |||||||||||||||||||||||||| |
|
|
| T |
52525486 |
aacgattaccttgagagaaaattcacaaaa |
52525515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 206 - 366
Target Start/End: Original strand, 22292156 - 22292316
Alignment:
| Q |
206 |
aaacaaaattcaattcatagaaagggtaaaactattaccttgagagaaaattcacaaaatcaacaaatctgaacaacgatggaataaaacattaagcatg |
305 |
Q |
| |
|
||||| |||||||| ||||||||||| ||| | |||||||||||||||| ||| |||||| | |||||||||||| | ||||| | |||||||||| |
|
|
| T |
22292156 |
aaacacaattcaatacatagaaagggaaaagcgattaccttgagagaaacttcgcaaaattagcaaatctgaacagtggtggaagggagcattaagcata |
22292255 |
T |
|
| Q |
306 |
atggatgtttaagatttagcaacagaagaagcattgttgatgaagggagagagaaacgatg |
366 |
Q |
| |
|
|||||||| | ||||| |||||| | |||||| ||||||||||| |||||||| ||||||| |
|
|
| T |
22292256 |
atggatgtcttagattcagcaacgggagaagctttgttgatgaacggagagagcaacgatg |
22292316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 52525319 - 52525386
Alignment:
| Q |
22 |
agaagaaggtgaaagtgaaaagatgaacaattttgggaatacctgaacattcaatacctccgattttt |
89 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||| |
|
|
| T |
52525319 |
agaagaaggtgaaagtgaaaagatgaacaattttgggaatgcctgaacattcaacacctccaattttt |
52525386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 6e-23; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 494 - 549
Target Start/End: Complemental strand, 33865939 - 33865884
Alignment:
| Q |
494 |
gagagagaagagggactgaaaatggaagatgaatttctcagatcagagaaaaatgg |
549 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33865939 |
gagagagaagagggactgaaaatggaagatgaatttctcagatcagagaaaaatgg |
33865884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 232 - 291
Target Start/End: Original strand, 37362214 - 37362273
Alignment:
| Q |
232 |
taaaactattaccttgagagaaaattcacaaaatcaacaaatctgaacaacgatggaata |
291 |
Q |
| |
|
|||||| || |||||||||||||||||| ||||| ||||||| ||||||| ||||||||| |
|
|
| T |
37362214 |
taaaacgataaccttgagagaaaattcataaaataaacaaatatgaacaatgatggaata |
37362273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 6e-23; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 494 - 549
Target Start/End: Complemental strand, 11075226 - 11075171
Alignment:
| Q |
494 |
gagagagaagagggactgaaaatggaagatgaatttctcagatcagagaaaaatgg |
549 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11075226 |
gagagagaagagggactgaaaatggaagatgaatttctcagatcagagaaaaatgg |
11075171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 206 - 280
Target Start/End: Complemental strand, 10093117 - 10093043
Alignment:
| Q |
206 |
aaacaaaattcaattcatagaaagggtaaaactattaccttgagagaaaattcacaaaatcaacaaatctgaaca |
280 |
Q |
| |
|
||||| |||||||||||||||||||| ||| |||||||||||||||||| || |||||| | |||||||||||| |
|
|
| T |
10093117 |
aaacacaattcaattcatagaaagggaaaagctattaccttgagagaaactttgcaaaattagcaaatctgaaca |
10093043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 206 - 287
Target Start/End: Original strand, 33044908 - 33044989
Alignment:
| Q |
206 |
aaacaaaattcaattcatagaaagggtaaaactattaccttgagagaaaattcacaaaatcaacaaatctgaacaacgatgg |
287 |
Q |
| |
|
||||| ||||||||||||||||| || ||| |||||||||||||||||| || |||||| | |||||||||||| |||||| |
|
|
| T |
33044908 |
aaacacaattcaattcatagaaaaggaaaagctattaccttgagagaaactttgcaaaattagcaaatctgaacagcgatgg |
33044989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 494 - 549
Target Start/End: Original strand, 23216755 - 23216810
Alignment:
| Q |
494 |
gagagagaagagggactgaaaatggaagatgaatttctcagatcagagaaaaatgg |
549 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
23216755 |
gagagagaagagggactgaaaatggaagatgaatttctcatatcagagaaaaatgg |
23216810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 494 - 549
Target Start/End: Original strand, 30765777 - 30765831
Alignment:
| Q |
494 |
gagagagaagagggactgaaaatggaagatgaatttctcagatcagagaaaaatgg |
549 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |||||| ||||||||||||||| |
|
|
| T |
30765777 |
gagagagaagagggactgaaa-tggaagatgactttctctcatcagagaaaaatgg |
30765831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 206 - 251
Target Start/End: Complemental strand, 17682425 - 17682380
Alignment:
| Q |
206 |
aaacaaaattcaattcatagaaagggtaaaactattaccttgagag |
251 |
Q |
| |
|
||||| |||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
17682425 |
aaacacaattcaattcatagaaagggaaaaacgattaccttgagag |
17682380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 206 - 287
Target Start/End: Complemental strand, 5658415 - 5658334
Alignment:
| Q |
206 |
aaacaaaattcaattcatagaaagggtaaaactattaccttgagagaaaattcacaaaatcaacaaatctgaacaacgatgg |
287 |
Q |
| |
|
||||| |||||||||||||||||||| ||| |||||||||||||||||| || |||||| | ||||||||||||||||||| |
|
|
| T |
5658415 |
aaacacaattcaattcatagaaagggaaaagctattaccttgagagaaactttgcaaaattagcaaatctgaacaacgatgg |
5658334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 207 - 280
Target Start/End: Original strand, 14677485 - 14677558
Alignment:
| Q |
207 |
aacaaaattcaattcatagaaagggtaaaactattaccttgagagaaaattcacaaaatcaacaaatctgaaca |
280 |
Q |
| |
|
|||| |||||||||||||||||||| ||| |||||||||||||||||| || |||||| | |||||||||||| |
|
|
| T |
14677485 |
aacacaattcaattcatagaaagggaaaagctattaccttgagagaaactttgcaaaattagcaaatctgaaca |
14677558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 206 - 287
Target Start/End: Original strand, 31100334 - 31100415
Alignment:
| Q |
206 |
aaacaaaattcaattcatagaaagggtaaaactattaccttgagagaaaattcacaaaatcaacaaatctgaacaacgatgg |
287 |
Q |
| |
|
||||| ||||||||||||||||| | ||| |||||||||||||||||| || |||||| | |||||||||||| |||||| |
|
|
| T |
31100334 |
aaacacaattcaattcatagaaaagaaaaagctattaccttgagagaaactttgcaaaattagcaaatctgaacagcgatgg |
31100415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 206 - 286
Target Start/End: Original strand, 11096 - 11176
Alignment:
| Q |
206 |
aaacaaaattcaattcatagaaagggtaaaactattaccttgagagaaaattcacaaaatcaacaaatctgaacaacgatg |
286 |
Q |
| |
|
||||| |||||||||||||||||||| ||| |||||||||||||||||| || |||||| | ||||| |||||||||||| |
|
|
| T |
11096 |
aaacacaattcaattcatagaaagggaaaagctattaccttgagagaaactttgcaaaattagcaaatttgaacaacgatg |
11176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 207 - 287
Target Start/End: Complemental strand, 35719 - 35639
Alignment:
| Q |
207 |
aacaaaattcaattcatagaaagggtaaaactattaccttgagagaaaattcacaaaatcaacaaatctgaacaacgatgg |
287 |
Q |
| |
|
|||| |||||||||||||||||||| ||| |||||||||||||| ||| || |||||| | |||||||||||| |||||| |
|
|
| T |
35719 |
aacacaattcaattcatagaaagggaaaagctattaccttgagataaactttgcaaaattagcaaatctgaacagcgatgg |
35639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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