View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13660_low_5 (Length: 514)
Name: NF13660_low_5
Description: NF13660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13660_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 25 - 463
Target Start/End: Complemental strand, 22990686 - 22990246
Alignment:
| Q |
25 |
gaccaagtttttctcaccattcttcatcattattaaatatgataatgcaaagattctatccaagtatgaaactgggtccaattattgcttcaatcgaagc |
124 |
Q |
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| T |
22990686 |
gacctagtttttctcaccattcttcatcattattaaatatgataatgcaaagattctatccaagtatgaaactgggtccaattattgcttcaatcgaagc |
22990587 |
T |
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| Q |
125 |
caagtctggatttggagcttctgttgttgacttcaatatacaaaagagtaatcatcagtccg-atagcaaaatttggttattggtggcaaaaaccgagga |
223 |
Q |
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| T |
22990586 |
caagtctggatttggagcttctgttgttgacttcaatatacaaaagaaaaatcatcagtccgaataaaaaattttggttattggtggcagaaactgataa |
22990487 |
T |
|
| Q |
224 |
tattgagacatctgcatgcctgataaaccctcagcaagtgaattttctcgtcaatggagaagcaattaacacgaggactttgcttggaatggatcatcag |
323 |
Q |
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| T |
22990486 |
tattgagacatctgcatgcttgataaaccctcaggatgtgaattttctcgtgaatggagaagcaattaacacgaggactttgcttggaatggaccatcag |
22990387 |
T |
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| Q |
324 |
ccacagatgcccacctgtttgaacagcatgcttaaatttgggacaaa-tctttttcaagctgtcggtgaattcgatggtaattatattatacttgttgcc |
422 |
Q |
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| T |
22990386 |
ccacagatgcccacttgtttgaacagcatgcttaaatttgggacaaattctttttcaagctgttggtgaattcgatggtaattatattatacttgttgcc |
22990287 |
T |
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| Q |
423 |
tatatgagttatgttgatgcatcattgccgcccaagcttcc |
463 |
Q |
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| T |
22990286 |
tatatgagttatgttgatgcatccttgccacccgagcttcc |
22990246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 324 - 401
Target Start/End: Original strand, 2538112 - 2538189
Alignment:
| Q |
324 |
ccacagatgcccacctgtttgaacagcatgcttaaatttgggacaaatctttttcaagctgtcggtgaattcgatggt |
401 |
Q |
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| T |
2538112 |
ccacagatgcccacctgtgtgactggtatccttaaatttgggacaaatcttcttcaagctgtgggtcagttcgatggt |
2538189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 403 - 431
Target Start/End: Original strand, 2538281 - 2538309
Alignment:
| Q |
403 |
attatattatacttgttgcctatatgagt |
431 |
Q |
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| T |
2538281 |
attatattatacttgttgcctatatgagt |
2538309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 396 - 444
Target Start/End: Complemental strand, 49515576 - 49515528
Alignment:
| Q |
396 |
gatggtaattatattatacttgttgcctatatgagttatgttgatgcat |
444 |
Q |
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| T |
49515576 |
gatggtcattatattatacttgttgcttatatgaattatgttgttgcat |
49515528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 358
Target Start/End: Original strand, 49516792 - 49516885
Alignment:
| Q |
265 |
attttctcgtcaatggagaagcaattaacacgaggactttgcttggaatggatcatcagccacagatgcccacctgtttgaacagcatgcttaa |
358 |
Q |
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| T |
49516792 |
attttctcatgaatggaaaaacaattaacacaaggactaagctttgaatggatcatggaccacagatgaccacttgtgtgaatagtatgcttaa |
49516885 |
T |
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