View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13660_low_6 (Length: 475)

Name: NF13660_low_6
Description: NF13660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13660_low_6
NF13660_low_6
[»] chr8 (2 HSPs)
chr8 (19-460)||(16690662-16691103)
chr8 (302-354)||(45371071-45371123)
[»] chr3 (2 HSPs)
chr3 (272-381)||(24830146-24830255)
chr3 (281-354)||(54838618-54838691)
[»] chr6 (5 HSPs)
chr6 (289-406)||(31694684-31694799)
chr6 (302-351)||(9075211-9075260)
chr6 (264-293)||(20868635-20868664)
chr6 (302-354)||(9074109-9074161)
chr6 (272-312)||(34227377-34227417)
[»] chr7 (2 HSPs)
chr7 (272-348)||(48517388-48517464)
chr7 (281-351)||(24673376-24673446)
[»] chr5 (3 HSPs)
chr5 (262-313)||(4345191-4345241)
chr5 (322-393)||(40990954-40991025)
chr5 (365-405)||(28781136-28781176)
[»] chr4 (1 HSPs)
chr4 (329-393)||(48244442-48244506)


Alignment Details
Target: chr8 (Bit Score: 422; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 19 - 460
Target Start/End: Original strand, 16690662 - 16691103
Alignment:
Q  19 atgatgcagtaggttttagccctttattagaagagaaatctgaaggaccattgagtgattgattgattaaggcaagccatttcgcagcaggttcattgtc 118  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16690662 atgatgcagtgggttttagccctttatttgaagagaaatctgaaggaccattgagtgattgattgattaaggcaagccatttcgcagcaggttcattgtc 16690761  T
Q  119 ctctaatacaagcacatttccagcattcaaagggacaatctcttgaaagctaacaagtttgaaaaacaaaaatcatacttagaataaattagagcagaaa 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16690762 ctctaatacaagcacatttccagcattcaaagggacaatctcttgaaagctaacaagtttgaaaaacaaaaatcatacttagaataaattagagcagaaa 16690861  T
Q  219 tcatcaactatactgttttagttcctaactgtgttacaaattacagatcgcaaaaaataacagtttgttcaaatttcgcttcgcaacagtgctatggtgc 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  16690862 tcatcaactatactgttttagttcctaactgtgttacaaattacagatcgcaaaaaataacagtttgttcaaatttcgcttcgcaacagtgctatagtgc 16690961  T
Q  319 cgttataccctctatttgaaaacattttgtactaaacggtgtgtaacagaacaatagcgatttgtgaaaattccattatgctatagcactattgcacatc 418  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  16690962 cgttataccctctatttgaaaacattttgtactaaacagtgtgtaacagaacaatagcgatttgcgaaaattccattatgctatagcactattgcacatc 16691061  T
Q  419 atagctgctattgacaacactggtgcctaacaaatcatatct 460  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  16691062 atagctgctattgacaacactggtgcctaacaaatcatatct 16691103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 354
Target Start/End: Original strand, 45371071 - 45371123
Alignment:
Q  302 caacagtgctatggtgccgttataccctctatttgaaaacattttgtactaaa 354  Q
    |||||||||||| |||||||||||    |||||||| ||||||||||||||||    
T  45371071 caacagtgctatagtgccgttatagtagctatttgacaacattttgtactaaa 45371123  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 272 - 381
Target Start/End: Complemental strand, 24830255 - 24830146
Alignment:
Q  272 aaaataacagtttgttcaaatttcgcttcgcaacagtgctatggtgccgttataccctctatttgaaaacattttgtactaaacggtgtgtaacagaaca 371  Q
    |||| |||||||||||||||||| ||| | ||| |||||||| | |||| |||| ||| ||||||| |||||||| |||||||  |||| |   ||||||    
T  24830255 aaaacaacagtttgttcaaattttgctacacaagagtgctatagcgccgatatagcctttatttgacaacattttatactaaatagtgtattgtagaaca 24830156  T
Q  372 atagcgattt 381  Q
    ||||||||||    
T  24830155 atagcgattt 24830146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 354
Target Start/End: Complemental strand, 54838691 - 54838618
Alignment:
Q  281 gtttgttcaaatttcgcttcgcaacagtgctatggtgccgttataccctctatttgaaaacattttgtactaaa 354  Q
    ||||||||||||| ||||  ||||||||||||| | | | || || || |||||||| ||||||||||||||||    
T  54838691 gtttgttcaaattccgctgtgcaacagtgctatagcggcattttagccactatttgacaacattttgtactaaa 54838618  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 289 - 406
Target Start/End: Original strand, 31694684 - 31694799
Alignment:
Q  289 aaatttcgcttcgcaacagtgctatggtgccgttataccctctatttgaaaacattttgtactaaacggtgtgtaacagaacaatagcgatttgtgaaaa 388  Q
    ||||| |||| ||||| ||||||||  |||||| || ||| |||||||||||||||||||||||||  |||| | |||||||||||||  |||||  |||    
T  31694684 aaattccgctacgcaatagtgctata-tgccgt-atgcccactatttgaaaacattttgtactaaatagtgtatcacagaacaatagcagtttgtctaaa 31694781  T
Q  389 ttccattatgctatagca 406  Q
    ||||| || || ||||||    
T  31694782 ttccactacgccatagca 31694799  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 351
Target Start/End: Complemental strand, 9075260 - 9075211
Alignment:
Q  302 caacagtgctatggtgccgttataccctctatttgaaaacattttgtact 351  Q
    |||||||||||| | |||| |||| ||||||||||| |||||||||||||    
T  9075260 caacagtgctatagcgccgctataacctctatttgacaacattttgtact 9075211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 293
Target Start/End: Original strand, 20868635 - 20868664
Alignment:
Q  264 gatcgcaaaaaataacagtttgttcaaatt 293  Q
    ||||||||||||||||||||||||||||||    
T  20868635 gatcgcaaaaaataacagtttgttcaaatt 20868664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 354
Target Start/End: Original strand, 9074109 - 9074161
Alignment:
Q  302 caacagtgctatggtgccgttataccctctatttgaaaacattttgtactaaa 354  Q
    |||||||||||| | |||| |||| ||||||||||| ||||||||||| ||||    
T  9074109 caacagtgctatagcgccgctatagcctctatttgataacattttgtagtaaa 9074161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 272 - 312
Target Start/End: Complemental strand, 34227417 - 34227377
Alignment:
Q  272 aaaataacagtttgttcaaatttcgcttcgcaacagtgcta 312  Q
    |||||||||||||||||||||||| || | |||||||||||    
T  34227417 aaaataacagtttgttcaaatttcactacacaacagtgcta 34227377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 272 - 348
Target Start/End: Original strand, 48517388 - 48517464
Alignment:
Q  272 aaaataacagtttgttcaaatttcgcttcgcaacagtgctatggtgccgttataccctctatttgaaaacattttgt 348  Q
    |||||| | ||||||||||||||||||   ||||| |||||| | |||| |||| || |||||||||||||||||||    
T  48517388 aaaatagcggtttgttcaaatttcgctatacaacattgctatagcgccgctataaccactatttgaaaacattttgt 48517464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 281 - 351
Target Start/End: Original strand, 24673376 - 24673446
Alignment:
Q  281 gtttgttcaaatttcgcttcgcaacagtgctatggtgccgttataccctctatttgaaaacattttgtact 351  Q
    |||||||||||||  |||  ||||||||| |||||||||| |||| |  |||||||| |||||||||||||    
T  24673376 gtttgttcaaattcagctatgcaacagtgatatggtgccgctatagcggctatttgacaacattttgtact 24673446  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 262 - 313
Target Start/End: Complemental strand, 4345241 - 4345191
Alignment:
Q  262 cagatcgcaaaaaataacagtttgttcaaatttcgcttcgcaacagtgctat 313  Q
    ||||||||||||| |||||| ||||||||||| |||||||||||| ||||||    
T  4345241 cagatcgcaaaaa-taacagattgttcaaattccgcttcgcaacaatgctat 4345191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 322 - 393
Target Start/End: Complemental strand, 40991025 - 40990954
Alignment:
Q  322 tataccctctatttgaaaacattttgtactaaacggtgtgtaacagaacaatagcgatttgtgaaaattcca 393  Q
    ||||||| |||||||| ||||||||||||||||  | |||| |||||| ||||||| |||||  ||||||||    
T  40991025 tatacccactatttgacaacattttgtactaaatagcgtgtcacagaagaatagcggtttgtctaaattcca 40990954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 365 - 405
Target Start/End: Original strand, 28781136 - 28781176
Alignment:
Q  365 cagaacaatagcgatttgtgaaaattccattatgctatagc 405  Q
    |||||||| |||||||||| ||||||||| |||||||||||    
T  28781136 cagaacaacagcgatttgttaaaattccactatgctatagc 28781176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 329 - 393
Target Start/End: Original strand, 48244442 - 48244506
Alignment:
Q  329 tctatttgaaaacattttgtactaaacggtgtgtaacagaacaatagcgatttgtgaaaattcca 393  Q
    ||||||||| |||||  |||||||||| |||| |  |||||||||||||||||||  ||||||||    
T  48244442 tctatttgacaacatactgtactaaacagtgtatcgcagaacaatagcgatttgtttaaattcca 48244506  T

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