View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13660_low_7 (Length: 441)

Name: NF13660_low_7
Description: NF13660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13660_low_7
NF13660_low_7
[»] chr4 (12 HSPs)
chr4 (16-422)||(46109857-46110264)
chr4 (361-423)||(53673666-53673728)
chr4 (361-419)||(18628555-18628613)
chr4 (360-424)||(34398692-34398756)
chr4 (359-422)||(7694019-7694082)
chr4 (368-423)||(11802541-11802596)
chr4 (368-423)||(23819096-23819151)
chr4 (375-420)||(2592320-2592365)
chr4 (390-423)||(5131258-5131291)
chr4 (376-420)||(27123363-27123407)
chr4 (359-422)||(44138738-44138799)
chr4 (359-423)||(52645758-52645822)
[»] chr5 (18 HSPs)
chr5 (359-423)||(8651361-8651424)
chr5 (332-421)||(18704046-18704135)
chr5 (371-421)||(20028500-20028550)
chr5 (359-423)||(9174814-9174877)
chr5 (359-423)||(18906340-18906404)
chr5 (359-422)||(19138726-19138791)
chr5 (359-423)||(32194087-32194151)
chr5 (368-415)||(40205090-40205137)
chr5 (361-423)||(7319016-7319078)
chr5 (359-421)||(7319404-7319466)
chr5 (359-421)||(16889733-16889795)
chr5 (372-422)||(18902806-18902856)
chr5 (359-421)||(37588370-37588432)
chr5 (371-421)||(38104867-38104917)
chr5 (361-423)||(41957459-41957521)
chr5 (361-422)||(11615501-11615562)
chr5 (359-412)||(35553207-35553260)
chr5 (391-423)||(35963271-35963303)
[»] chr1 (21 HSPs)
chr1 (364-422)||(28077078-28077136)
chr1 (368-423)||(27963378-27963433)
chr1 (361-423)||(27140478-27140540)
chr1 (361-422)||(15558217-15558278)
chr1 (327-408)||(48830099-48830180)
chr1 (363-423)||(6279401-6279461)
chr1 (370-422)||(10199417-10199469)
chr1 (368-423)||(16981944-16981999)
chr1 (361-424)||(35179139-35179202)
chr1 (371-418)||(35590905-35590952)
chr1 (355-422)||(51929784-51929851)
chr1 (391-421)||(49557177-49557207)
chr1 (390-423)||(6659543-6659576)
chr1 (368-421)||(12564509-12564562)
chr1 (359-416)||(15361711-15361768)
chr1 (361-422)||(16322849-16322910)
chr1 (372-421)||(32515451-32515500)
chr1 (359-423)||(5592693-5592757)
chr1 (359-423)||(30371146-30371210)
chr1 (391-423)||(39347975-39348007)
chr1 (390-422)||(48748324-48748356)
[»] chr8 (15 HSPs)
chr8 (359-423)||(28769347-28769411)
chr8 (361-415)||(11795092-11795146)
chr8 (361-423)||(30277253-30277315)
chr8 (363-424)||(35220730-35220791)
chr8 (359-423)||(8062327-8062391)
chr8 (359-422)||(31705083-31705146)
chr8 (361-422)||(8060669-8060730)
chr8 (361-422)||(11569466-11569527)
chr8 (370-423)||(25869274-25869327)
chr8 (358-422)||(27028828-27028892)
chr8 (390-422)||(30918142-30918174)
chr8 (359-415)||(38036128-38036184)
chr8 (362-414)||(39881769-39881821)
chr8 (370-422)||(42215091-42215143)
chr8 (359-415)||(42370377-42370433)
[»] chr3 (24 HSPs)
chr3 (327-423)||(38462247-38462343)
chr3 (367-423)||(54180788-54180844)
chr3 (359-423)||(41724209-41724274)
chr3 (359-423)||(23785253-23785317)
chr3 (364-423)||(44284088-44284147)
chr3 (371-421)||(13371127-13371177)
chr3 (368-421)||(27792879-27792932)
chr3 (362-423)||(37273135-37273196)
chr3 (368-419)||(2318651-2318703)
chr3 (359-423)||(2719466-2719530)
chr3 (359-423)||(43115054-43115118)
chr3 (367-414)||(48528562-48528609)
chr3 (361-423)||(13709831-13709893)
chr3 (391-421)||(23793614-23793644)
chr3 (367-421)||(49546494-49546548)
chr3 (362-423)||(12985353-12985414)
chr3 (390-423)||(21862183-21862216)
chr3 (368-421)||(39885545-39885598)
chr3 (361-410)||(48286831-48286880)
chr3 (381-421)||(5292530-5292570)
chr3 (359-415)||(14548737-14548793)
chr3 (348-412)||(34254827-34254891)
chr3 (390-422)||(45432948-45432980)
chr3 (373-421)||(54137636-54137684)
[»] chr7 (12 HSPs)
chr7 (367-421)||(42281524-42281578)
chr7 (364-422)||(7244683-7244741)
chr7 (327-423)||(24363609-24363705)
chr7 (359-422)||(28165089-28165152)
chr7 (361-423)||(6263372-6263433)
chr7 (359-421)||(33645971-33646032)
chr7 (359-421)||(46281150-46281212)
chr7 (360-420)||(25596032-25596092)
chr7 (390-422)||(35267391-35267423)
chr7 (361-421)||(44821959-44822019)
chr7 (390-418)||(45859539-45859567)
chr7 (375-423)||(47134765-47134813)
[»] chr2 (15 HSPs)
chr2 (359-423)||(32821807-32821871)
chr2 (375-422)||(1647250-1647297)
chr2 (356-423)||(13056133-13056199)
chr2 (370-421)||(37034031-37034082)
chr2 (365-423)||(1939340-1939398)
chr2 (368-422)||(35379025-35379079)
chr2 (362-420)||(42817387-42817445)
chr2 (362-419)||(8187465-8187522)
chr2 (390-423)||(25796208-25796241)
chr2 (362-423)||(38077081-38077142)
chr2 (369-421)||(6227759-6227811)
chr2 (362-422)||(7871644-7871704)
chr2 (361-413)||(36852472-36852524)
chr2 (370-422)||(44443330-44443382)
chr2 (335-423)||(44458346-44458434)
[»] chr6 (13 HSPs)
chr6 (360-423)||(4246409-4246472)
chr6 (371-421)||(20512654-20512704)
chr6 (359-417)||(28088236-28088294)
chr6 (359-421)||(281858-281920)
chr6 (359-421)||(1401107-1401169)
chr6 (379-421)||(34404107-34404149)
chr6 (390-423)||(27909646-27909679)
chr6 (360-421)||(27998426-27998487)
chr6 (359-411)||(1402994-1403046)
chr6 (376-420)||(2460162-2460206)
chr6 (359-415)||(3168277-3168333)
chr6 (390-422)||(6536976-6537008)
chr6 (390-422)||(30863275-30863307)
[»] scaffold0089 (1 HSPs)
scaffold0089 (371-421)||(33637-33687)


Alignment Details
Target: chr4 (Bit Score: 371; Significance: 0; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 16 - 422
Target Start/End: Original strand, 46109857 - 46110264
Alignment:
Q  16 taacaaaggttctggaattatgagttctgaatcattttcttctcttgaattatctgaaaatacttctaaagctattgtggatatgggatttcaacactta 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46109857 taacaaaggttctggaattatgagttctgaatcattttcttctcttgaattatctgaaaatacttctaaagctattgtggatatgggatttcaacactta 46109956  T
Q  116 actcaggtaaagtaaatcaacgtttttctcttaatttcttgtaagataacccttttctaatgataatgtattaagcaannnnnnn-actctaaattaatt 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||    
T  46109957 actcaggtaaagtaaatcaacgtttttctcttaatttcttgtaagataacccttttctaatgataatgtattaagcaattttttttactctaaattaatt 46110056  T
Q  215 gtgtttgaagaaaaattagaccttgttttgatatagagcttaattgaagtccttatagcataatcacttgtcatgtaaattgtaaaagctattttagtat 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46110057 gtgtttgaagaaaaattagaccttgttttgatatagagcttaattgaagtccttatagcataatcacttgtcatgtaaattgtaaaagctattttagtat 46110156  T
Q  315 ttttataattttagatgaaataaagtcaagccatttttatacttgctataaactgttttcataagctattattgggagcttatagaaataagctgaaaac 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  46110157 ttttataattttagatgaaataaagtcaagccatttttatacttgctataaactgttttcataagctatgattgagagcttatagaaataagctgaaaac 46110256  T
Q  415 aacttatg 422  Q
    ||||||||    
T  46110257 aacttatg 46110264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 361 - 423
Target Start/End: Complemental strand, 53673728 - 53673666
Alignment:
Q  361 tataaactgttttcataagctattattgggagcttatagaaataagctgaaaacaacttatgg 423  Q
    |||||||||||||||||||||||  | | ||||||||  ||||||||||||||||||||||||    
T  53673728 tataaactgttttcataagctatcttggagagcttatgtaaataagctgaaaacaacttatgg 53673666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 361 - 419
Target Start/End: Complemental strand, 18628613 - 18628555
Alignment:
Q  361 tataaactgttttcataagctattattgggagcttatagaaataagctgaaaacaactt 419  Q
    ||||||||||||||||||| |||  | | |||||||| |||||||||||||||||||||    
T  18628613 tataaactgttttcataagttatcttggagagcttatggaaataagctgaaaacaactt 18628555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 360 - 424
Target Start/End: Complemental strand, 34398756 - 34398692
Alignment:
Q  360 ctataaactgttttcataagctattattgggagcttatagaaataagctgaaaacaacttatggg 424  Q
    |||||| |||||||||||||| || || | |||||||| ||| ||||| ||||||||||||||||    
T  34398756 ctataagctgttttcataagccatcatggagagcttatggaagtaagccgaaaacaacttatggg 34398692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 422
Target Start/End: Complemental strand, 7694082 - 7694019
Alignment:
Q  359 gctataaactgttttcataagctattattgggagcttatagaaataagctgaaaacaacttatg 422  Q
    ||||||| ||||||||||||| |||  | | ||| |||| ||||||||||||||||||||||||    
T  7694082 gctataagctgttttcataagttatcctggagagtttatggaaataagctgaaaacaacttatg 7694019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 368 - 423
Target Start/End: Original strand, 11802541 - 11802596
Alignment:
Q  368 tgttttcataagctattattgggagcttatagaaataagctgaaaacaacttatgg 423  Q
    ||||||||||||||||||| | ||||||||   ||||||||||||||| |||||||    
T  11802541 tgttttcataagctattatggagagcttatgagaataagctgaaaacagcttatgg 11802596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 368 - 423
Target Start/End: Original strand, 23819096 - 23819151
Alignment:
Q  368 tgttttcataagctattattgggagcttatagaaataagctgaaaacaacttatgg 423  Q
    ||||||||||||||||  |   ||||||||||||||||| ||||||||||||||||    
T  23819096 tgttttcataagctatcttgaagagcttatagaaataagatgaaaacaacttatgg 23819151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 420
Target Start/End: Complemental strand, 2592365 - 2592320
Alignment:
Q  375 ataagctattattgggagcttatagaaataagctgaaaacaactta 420  Q
    |||||||||| | | |||||||| ||||||||||||||||||||||    
T  2592365 ataagctattttggagagcttatggaaataagctgaaaacaactta 2592320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 423
Target Start/End: Complemental strand, 5131291 - 5131258
Alignment:
Q  390 gagcttatagaaataagctgaaaacaacttatgg 423  Q
    |||||||| |||||||||||||||||||||||||    
T  5131291 gagcttatggaaataagctgaaaacaacttatgg 5131258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 420
Target Start/End: Complemental strand, 27123407 - 27123363
Alignment:
Q  376 taagctattattgggagcttatagaaataagctgaaaacaactta 420  Q
    ||||||||||| | |||||||| |||||||| |||||||||||||    
T  27123407 taagctattatggagagcttatggaaataagttgaaaacaactta 27123363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 422
Target Start/End: Original strand, 44138738 - 44138799
Alignment:
Q  359 gctataaactgttttcataagctattattgggagcttatagaaataagctgaaaacaacttatg 422  Q
    |||||||| ||||||||||||||||  |||  |||||||  ||||||||||||||||| |||||    
T  44138738 gctataaaatgttttcataagctat--ttgttagcttatgaaaataagctgaaaacaaattatg 44138799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 423
Target Start/End: Complemental strand, 52645822 - 52645758
Alignment:
Q  359 gctataaactgttttcataagctattattgggagcttatagaaataagctgaaaacaacttatgg 423  Q
    |||||||  ||||||||||  |||| || ||||||||||||||||||| ||| |||| |||||||    
T  52645822 gctataacttgttttcatagactatcatagggagcttatagaaataagttgacaacagcttatgg 52645758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 359 - 423
Target Start/End: Complemental strand, 8651424 - 8651361
Alignment:
Q  359 gctataaactgttttcataagctattattgggagcttatagaaataagctgaaaacaacttatgg 423  Q
    |||||||||||||||||||||||||| | |||||||||| |||||| ||||||||||||||||||    
T  8651424 gctataaactgttttcataagctattct-gggagcttatggaaatatgctgaaaacaacttatgg 8651361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 332 - 421
Target Start/End: Complemental strand, 18704135 - 18704046
Alignment:
Q  332 aaataaagtcaagccatttttatacttgctataaactgttttcataagctattattgggagcttatagaaataagctgaaaacaacttat 421  Q
    |||||||||||||| |||||||||   |||||||  ||||||||||||||||||    || ||||| |||||||||||||||||||||||    
T  18704135 aaataaagtcaagctatttttatataagctataagttgttttcataagctattacaaagatcttatggaaataagctgaaaacaacttat 18704046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 371 - 421
Target Start/End: Complemental strand, 20028550 - 20028500
Alignment:
Q  371 tttcataagctattattgggagcttatagaaataagctgaaaacaacttat 421  Q
    ||||||||||||||||   ||||||||||||||||||||||||||||||||    
T  20028550 tttcataagctattatgaagagcttatagaaataagctgaaaacaacttat 20028500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 359 - 423
Target Start/End: Original strand, 9174814 - 9174877
Alignment:
Q  359 gctataaactgttttcataagctattattgggagcttatagaaataagctgaaaacaacttatgg 423  Q
    ||||||||||||||||||||||||||  ||||||||||| |||| | | ||||||||||||||||    
T  9174814 gctataaactgttttcataagctatt-ctgggagcttatcgaaaaatgttgaaaacaacttatgg 9174877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 359 - 423
Target Start/End: Original strand, 18906340 - 18906404
Alignment:
Q  359 gctataaactgttttcataagctattattgggagcttatagaaataagctgaaaacaacttatgg 423  Q
    |||||||||||||||||||||||||  |    ||||||| |||||||||||||||||||||||||    
T  18906340 gctataaactgttttcataagctatcttgaaaagcttatcgaaataagctgaaaacaacttatgg 18906404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 359 - 422
Target Start/End: Complemental strand, 19138791 - 19138726
Alignment:
Q  359 gctataaactgttttcataagctattat-tgg-gagcttatagaaataagctgaaaacaacttatg 422  Q
    |||||||  ||||||||||||||||||| ||| |||||||| |||||||||||||||||| |||||    
T  19138791 gctataagttgttttcataagctattatatggagagcttatggaaataagctgaaaacaatttatg 19138726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 359 - 423
Target Start/End: Complemental strand, 32194151 - 32194087
Alignment:
Q  359 gctataaactgttttcataagctattattgggagcttatagaaataagctgaaaacaacttatgg 423  Q
    |||||||  ||||||  ||||||||  ||| ||||||||| ||||||||||||||||||||||||    
T  32194151 gctataagatgtttttttaagctatctttgagagcttatataaataagctgaaaacaacttatgg 32194087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 368 - 415
Target Start/End: Complemental strand, 40205137 - 40205090
Alignment:
Q  368 tgttttcataagctattattgggagcttatagaaataagctgaaaaca 415  Q
    ||||||||||||||||  | | ||||||||||||||||||||||||||    
T  40205137 tgttttcataagctatcctggagagcttatagaaataagctgaaaaca 40205090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 423
Target Start/End: Complemental strand, 7319078 - 7319016
Alignment:
Q  361 tataaactgttttcataagctattattgggagcttatagaaataagctgaaaacaacttatgg 423  Q
    |||||||||||||||||||||||  | | || |||||  ||||||||||| ||||||||||||    
T  7319078 tataaactgttttcataagctatcttggagaacttatgaaaataagctgagaacaacttatgg 7319016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 421
Target Start/End: Original strand, 7319404 - 7319466
Alignment:
Q  359 gctataaactgttttcataagctattattgggagcttatagaaataagctgaaaacaacttat 421  Q
    |||||||||||||||| ||||||||  | | || |||||| ||||||||||||| ||||||||    
T  7319404 gctataaactgttttcgtaagctatcttggagaacttataaaaataagctgaaagcaacttat 7319466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 421
Target Start/End: Original strand, 16889733 - 16889795
Alignment:
Q  359 gctataaactgttttcataagctattattgggagcttatagaaataagctgaaaacaacttat 421  Q
    ||||||| |||||||||||||||||  | | ||| |||| ||||||| |||||||||||||||    
T  16889733 gctataagctgttttcataagctatgctagagagtttatggaaataatctgaaaacaacttat 16889795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 372 - 422
Target Start/End: Original strand, 18902806 - 18902856
Alignment:
Q  372 ttcataagctattattgggagcttatagaaataagctgaaaacaacttatg 422  Q
    ||||||||||||| | |||||||||| ||||||||||| ||||| ||||||    
T  18902806 ttcataagctattttggggagcttatggaaataagctgcaaacagcttatg 18902856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 421
Target Start/End: Complemental strand, 37588432 - 37588370
Alignment:
Q  359 gctataaactgttttcataagctattattgggagcttatagaaataagctgaaaacaacttat 421  Q
    |||||||  |||||||||||| |||| | | |||||||| ||||||||||||||||| |||||    
T  37588432 gctataagttgttttcataagttattctggagagcttatggaaataagctgaaaacagcttat 37588370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 371 - 421
Target Start/End: Complemental strand, 38104917 - 38104867
Alignment:
Q  371 tttcataagctattattgggagcttatagaaataagctgaaaacaacttat 421  Q
    |||||||||||||  | | |||||||| |||||||||||||||||||||||    
T  38104917 tttcataagctatcttagagagcttatggaaataagctgaaaacaacttat 38104867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 423
Target Start/End: Complemental strand, 41957521 - 41957459
Alignment:
Q  361 tataaactgttttcataagctattattgggagcttatagaaataagctgaaaacaacttatgg 423  Q
    ||||| |||||||||||||||||  ||| || |||||  ||||||| ||||||||||||||||    
T  41957521 tataagctgttttcataagctatccttgagaacttatgaaaataagatgaaaacaacttatgg 41957459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 422
Target Start/End: Original strand, 11615501 - 11615562
Alignment:
Q  361 tataaactgttttcataagctattattgggagcttatagaaataagctgaaaacaacttatg 422  Q
    ||||| ||||||||||||| |||  ||  |||||||| ||||||||||||||||| ||||||    
T  11615501 tataagctgttttcataagatatccttatgagcttatggaaataagctgaaaacagcttatg 11615562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 412
Target Start/End: Complemental strand, 35553260 - 35553207
Alignment:
Q  359 gctataaactgttttcataagctattattgggagcttatagaaataagctgaaa 412  Q
    |||||||||| |||||||| |||||| | | |||||||| ||||||||||||||    
T  35553260 gctataaactattttcatacgctattctggagagcttatggaaataagctgaaa 35553207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 391 - 423
Target Start/End: Original strand, 35963271 - 35963303
Alignment:
Q  391 agcttatagaaataagctgaaaacaacttatgg 423  Q
    ||||||| |||||||||||||||||||||||||    
T  35963271 agcttatggaaataagctgaaaacaacttatgg 35963303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 364 - 422
Target Start/End: Complemental strand, 28077136 - 28077078
Alignment:
Q  364 aaactgttttcataagctattattgggagcttatagaaataagctgaaaacaacttatg 422  Q
    ||||||||||||||||||||| | | |||||||| ||||||||||||||||||||||||    
T  28077136 aaactgttttcataagctattttagagagcttattgaaataagctgaaaacaacttatg 28077078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 368 - 423
Target Start/End: Complemental strand, 27963433 - 27963378
Alignment:
Q  368 tgttttcataagctattattgggagcttatagaaataagctgaaaacaacttatgg 423  Q
    ||||||||||||||||||| | ||||||||| ||||||||| ||||||||||||||    
T  27963433 tgttttcataagctattatggagagcttatataaataagctaaaaacaacttatgg 27963378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 361 - 423
Target Start/End: Original strand, 27140478 - 27140540
Alignment:
Q  361 tataaactgttttcataagctattattgggagcttatagaaataagctgaaaacaacttatgg 423  Q
    ||||| ||||||| ||||||||| || | ||||||||  ||||||||||||||||||||||||    
T  27140478 tataagctgtttttataagctatcatggagagcttatgcaaataagctgaaaacaacttatgg 27140540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 361 - 422
Target Start/End: Original strand, 15558217 - 15558278
Alignment:
Q  361 tataaactgttttcataagctattattgggagcttatagaaataagctgaaaacaacttatg 422  Q
    ||||| ||||||||||||| |||  | | || ||||||||||||||||||||||||||||||    
T  15558217 tataagctgttttcataagatatcctagagaacttatagaaataagctgaaaacaacttatg 15558278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 327 - 408
Target Start/End: Complemental strand, 48830180 - 48830099
Alignment:
Q  327 agatgaaataaagtcaagccatttttatacttgctataaactgttttcataagctattattgggagcttatagaaataagct 408  Q
    |||| |||||||||||| | ||||| |||   |||||||||||||||||||||||||| |   ||||| |||||||||||||    
T  48830180 agataaaataaagtcaaactattttcatataagctataaactgttttcataagctattctaaagagctaatagaaataagct 48830099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 363 - 423
Target Start/End: Original strand, 6279401 - 6279461
Alignment:
Q  363 taaactgttttcataagctattattgggagcttatagaaataagctgaaaacaacttatgg 423  Q
    |||||| ||||||||||||||  | | |||||||| |||||| ||||||||||||||||||    
T  6279401 taaactattttcataagctatcctagagagcttatggaaatacgctgaaaacaacttatgg 6279461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 370 - 422
Target Start/End: Complemental strand, 10199469 - 10199417
Alignment:
Q  370 ttttcataagctattattgggagcttatagaaataagctgaaaacaacttatg 422  Q
    ||||||||||||||| | | ||||||||  |||||||||||||||||||||||    
T  10199469 ttttcataagctattttagagagcttatgaaaataagctgaaaacaacttatg 10199417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 368 - 423
Target Start/End: Complemental strand, 16981999 - 16981944
Alignment:
Q  368 tgttttcataagctattattgggagcttatagaaataagctgaaaacaacttatgg 423  Q
    |||| ||||||||||| || | ||||||||| ||||||||| ||||||||||||||    
T  16981999 tgttatcataagctatcatggagagcttatataaataagctaaaaacaacttatgg 16981944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 361 - 424
Target Start/End: Original strand, 35179139 - 35179202
Alignment:
Q  361 tataaactgttttcataagctattattgggagcttatagaaataagctgaaaacaacttatggg 424  Q
    ||||| ||||||||||||| |||||| | || |||||  |||||||||||||||| ||||||||    
T  35179139 tataagctgttttcataagttattatggagaacttatgaaaataagctgaaaacagcttatggg 35179202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 418
Target Start/End: Complemental strand, 35590952 - 35590905
Alignment:
Q  371 tttcataagctattattgggagcttatagaaataagctgaaaacaact 418  Q
    ||||||||||||| || | |||||||| ||||||||||||||||||||    
T  35590952 tttcataagctatcatggagagcttatggaaataagctgaaaacaact 35590905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 422
Target Start/End: Complemental strand, 51929851 - 51929784
Alignment:
Q  355 acttgctataaactgttttcataagctattattgggagcttatagaaataagctgaaaacaacttatg 422  Q
    ||||| ||||| |||||||||||||||||| | | |||||||| ||||||||| |||| || ||||||    
T  51929851 acttgttataagctgttttcataagctattctagagagcttatggaaataagccgaaatcagcttatg 51929784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 391 - 421
Target Start/End: Original strand, 49557177 - 49557207
Alignment:
Q  391 agcttatagaaataagctgaaaacaacttat 421  Q
    |||||||||||||||||||||||||||||||    
T  49557177 agcttatagaaataagctgaaaacaacttat 49557207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 423
Target Start/End: Original strand, 6659543 - 6659576
Alignment:
Q  390 gagcttatagaaataagctgaaaacaacttatgg 423  Q
    |||||||| |||||||||||||||||||||||||    
T  6659543 gagcttatcgaaataagctgaaaacaacttatgg 6659576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 421
Target Start/End: Complemental strand, 12564562 - 12564509
Alignment:
Q  368 tgttttcataagctattattgggagcttatagaaataagctgaaaacaacttat 421  Q
    ||||||||||||||||  | | || ||||| |||||||||||||||||||||||    
T  12564562 tgttttcataagctatcttggagaacttatggaaataagctgaaaacaacttat 12564509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 416
Target Start/End: Original strand, 15361711 - 15361768
Alignment:
Q  359 gctataaactgttttcataagctattattgggagcttatagaaataagctgaaaacaa 416  Q
    ||||||| ||||||||||||| |||| ||| ||| |||| ||| ||||||||||||||    
T  15361711 gctataagctgttttcataagatattcttgagagtttatggaattaagctgaaaacaa 15361768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 422
Target Start/End: Original strand, 16322849 - 16322910
Alignment:
Q  361 tataaactgttttcataagctattattgggagcttatagaaataagctgaaaacaacttatg 422  Q
    ||||| ||||||||||| |||||| |   |||||||| |||||||||| |||||||||||||    
T  16322849 tataagctgttttcataggctattttgaagagcttatggaaataagctaaaaacaacttatg 16322910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 421
Target Start/End: Complemental strand, 32515500 - 32515451
Alignment:
Q  372 ttcataagctattattgggagcttatagaaataagctgaaaacaacttat 421  Q
    |||||||||||| || | ||||||||||| ||||| ||||||||||||||    
T  32515500 ttcataagctatcatggagagcttatagatataagttgaaaacaacttat 32515451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 423
Target Start/End: Complemental strand, 5592757 - 5592693
Alignment:
Q  359 gctataaactgttttcataagctattattgggagcttatagaaataagctgaaaacaacttatgg 423  Q
    |||||||  ||||||||||||||| | ||  ||||||||  |||||||||| |||||||||||||    
T  5592757 gctataagttgttttcataagctagtcttaagagcttatgaaaataagctggaaacaacttatgg 5592693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 423
Target Start/End: Original strand, 30371146 - 30371210
Alignment:
Q  359 gctataaactgttttcataagctattattgggagcttatagaaataagctgaaaacaacttatgg 423  Q
    |||||||  ||||||||||||  ||| | | |||| ||| |||||||||||||||||||||||||    
T  30371146 gctataagttgttttcataagacattttggagagcgtattgaaataagctgaaaacaacttatgg 30371210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 391 - 423
Target Start/End: Complemental strand, 39348007 - 39347975
Alignment:
Q  391 agcttatagaaataagctgaaaacaacttatgg 423  Q
    ||||||| |||||||||||||||||||||||||    
T  39348007 agcttatggaaataagctgaaaacaacttatgg 39347975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 390 - 422
Target Start/End: Complemental strand, 48748356 - 48748324
Alignment:
Q  390 gagcttatagaaataagctgaaaacaacttatg 422  Q
    |||||||| ||||||||||||||||||||||||    
T  48748356 gagcttatggaaataagctgaaaacaacttatg 48748324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 359 - 423
Target Start/End: Complemental strand, 28769411 - 28769347
Alignment:
Q  359 gctataaactgttttcataagctattattgggagcttatagaaataagctgaaaacaacttatgg 423  Q
    ||||||| |||||||||||||||||| | | ||| |||| |||||||||||||||||||||||||    
T  28769411 gctataagctgttttcataagctattttggagagtttatggaaataagctgaaaacaacttatgg 28769347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 361 - 415
Target Start/End: Original strand, 11795092 - 11795146
Alignment:
Q  361 tataaactgttttcataagctattattgggagcttatagaaataagctgaaaaca 415  Q
    ||||| ||| |||||||||||||||| | |||||||| |||||||||||||||||    
T  11795092 tataagctgatttcataagctattatggagagcttatggaaataagctgaaaaca 11795146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 361 - 423
Target Start/End: Complemental strand, 30277315 - 30277253
Alignment:
Q  361 tataaactgttttcataagctattattgggagcttatagaaataagctgaaaacaacttatgg 423  Q
    ||||| |||||||||||||||||  | | ||| |||| |||||||||||||||||||||||||    
T  30277315 tataagctgttttcataagctatcctagagagtttatggaaataagctgaaaacaacttatgg 30277253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 363 - 424
Target Start/End: Complemental strand, 35220791 - 35220730
Alignment:
Q  363 taaactgttttcataagctattattgggagcttatagaaataagctgaaaacaacttatggg 424  Q
    |||||||||||||||||||||| | | ||||||||| ||||||||| |||| | ||||||||    
T  35220791 taaactgttttcataagctattctggagagcttataaaaataagctaaaaatagcttatggg 35220730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 359 - 423
Target Start/End: Original strand, 8062327 - 8062391
Alignment:
Q  359 gctataaactgttttcataagctattattgggagcttatagaaataagctgaaaacaacttatgg 423  Q
    ||||||| |||||||||||||||||  | | ||| |||| ||||||||||||||||| |||||||    
T  8062327 gctataagctgttttcataagctatcttagagagattatggaaataagctgaaaacatcttatgg 8062391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 422
Target Start/End: Original strand, 31705083 - 31705146
Alignment:
Q  359 gctataaactgttttcataagctattattgggagcttatagaaataagctgaaaacaacttatg 422  Q
    ||||||| ||||||||||||||| |  ||| ||| |||| ||||||||||||||||| ||||||    
T  31705083 gctataagctgttttcataagctgtccttgagagtttatggaaataagctgaaaacagcttatg 31705146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 422
Target Start/End: Original strand, 8060669 - 8060730
Alignment:
Q  361 tataaactgttttcataagctattattgggagcttatagaaataagctgaaaacaacttatg 422  Q
    ||||| |||||||||||||| ||  | | |||||||| ||||||||||||||| ||||||||    
T  8060669 tataagctgttttcataagcaatcctagagagcttatggaaataagctgaaaataacttatg 8060730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 422
Target Start/End: Complemental strand, 11569527 - 11569466
Alignment:
Q  361 tataaactgttttcataagctattattgggagcttatagaaataagctgaaaacaacttatg 422  Q
    ||||| ||||||||||||||||| || | ||| || |  |||||||||||||||||||||||    
T  11569527 tataagctgttttcataagctatcatggagagattttgaaaataagctgaaaacaacttatg 11569466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 423
Target Start/End: Complemental strand, 25869327 - 25869274
Alignment:
Q  370 ttttcataagctattattgggagcttatagaaataagctgaaaacaacttatgg 423  Q
    |||||||| ||||| || | ||| |||| |||||||||||||||||||||||||    
T  25869327 ttttcataggctatcatggagagtttatggaaataagctgaaaacaacttatgg 25869274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 422
Target Start/End: Original strand, 27028828 - 27028892
Alignment:
Q  358 tgctataaactgttttcataagctattattgggagcttatagaaataagctgaaaacaacttatg 422  Q
    |||||||| |||||||||||||||||  | | ||||||||  |||||||||||||| | ||||||    
T  27028828 tgctataagctgttttcataagctatcttggagagcttatgaaaataagctgaaaatagcttatg 27028892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 390 - 422
Target Start/End: Original strand, 30918142 - 30918174
Alignment:
Q  390 gagcttatagaaataagctgaaaacaacttatg 422  Q
    |||||||| ||||||||||||||||||||||||    
T  30918142 gagcttatggaaataagctgaaaacaacttatg 30918174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 415
Target Start/End: Complemental strand, 38036184 - 38036128
Alignment:
Q  359 gctataaactgttttcataagctattattgggagcttatagaaataagctgaaaaca 415  Q
    ||||||||||||||| || ||||||  | | |||||||| |||||||||||||||||    
T  38036184 gctataaactgttttgattagctatcttggagagcttattgaaataagctgaaaaca 38036128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 414
Target Start/End: Complemental strand, 39881821 - 39881769
Alignment:
Q  362 ataaactgttttcataagctattattgggagcttatagaaataagctgaaaac 414  Q
    ||||| |||||| ||||||||| || | |||||||| ||||||||||||||||    
T  39881821 ataaattgtttttataagctatcatggagagcttatggaaataagctgaaaac 39881769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 422
Target Start/End: Complemental strand, 42215143 - 42215091
Alignment:
Q  370 ttttcataagctattattgggagcttatagaaataagctgaaaacaacttatg 422  Q
    ||||||||||||||  | | ||||||||  |||||||||||||||||||||||    
T  42215143 ttttcataagctatcttggagagcttatgtaaataagctgaaaacaacttatg 42215091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 415
Target Start/End: Complemental strand, 42370433 - 42370377
Alignment:
Q  359 gctataaactgttttcataagctattattgggagcttatagaaataagctgaaaaca 415  Q
    ||||||||||||| ||||||||||| ||   ||| |||| |||||||||||||||||    
T  42370433 gctataaactgttctcataagctatcatgaagagtttatggaaataagctgaaaaca 42370377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 327 - 423
Target Start/End: Original strand, 38462247 - 38462343
Alignment:
Q  327 agatgaaataaagtcaagccatttttatacttgctataaactgttttcataagctattattgggagcttatagaaataagctgaaaacaacttatgg 423  Q
    |||| |||||||||||| |  |||| |||  ||||||||||||||||||||||||||    |  ||||||| |||||||||||||||||||||||||    
T  38462247 agataaaataaagtcaaactgttttcatatatgctataaactgttttcataagctatccaagatagcttatggaaataagctgaaaacaacttatgg 38462343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 367 - 423
Target Start/End: Complemental strand, 54180844 - 54180788
Alignment:
Q  367 ctgttttcataagctattattgggagcttatagaaataagctgaaaacaacttatgg 423  Q
    |||||||||||||||||||| | ||||||||| ||||||||| ||||||||||||||    
T  54180844 ctgttttcataagctattatggagagcttatataaataagctaaaaacaacttatgg 54180788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 359 - 423
Target Start/End: Original strand, 41724209 - 41724274
Alignment:
Q  359 gctataaactgttttcataagctattattgggagcttata-gaaataagctgaaaacaacttatgg 423  Q
    |||||||||||||||||| ||||||  ||| |||||||||  ||||||||||||||||||||||||    
T  41724209 gctataaactgttttcatcagctatccttgagagcttatataaaataagctgaaaacaacttatgg 41724274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 359 - 423
Target Start/End: Original strand, 23785253 - 23785317
Alignment:
Q  359 gctataaactgttttcataagctattattgggagcttatagaaataagctgaaaacaacttatgg 423  Q
    ||||||||||||||||| ||||| | || | |||||||| |||| ||||||||||||||||||||    
T  23785253 gctataaactgttttcacaagctctcatggagagcttatggaaacaagctgaaaacaacttatgg 23785317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 364 - 423
Target Start/End: Complemental strand, 44284147 - 44284088
Alignment:
Q  364 aaactgttttcataagctattattgggagcttatagaaataagctgaaaacaacttatgg 423  Q
    ||||||||||||||||||||  | | |||||||||||||||||||||||| | |||||||    
T  44284147 aaactgttttcataagctatcctggagagcttatagaaataagctgaaaatagcttatgg 44284088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 371 - 421
Target Start/End: Original strand, 13371127 - 13371177
Alignment:
Q  371 tttcataagctattattgggagcttatagaaataagctgaaaacaacttat 421  Q
    ||||||||||||||||   |||||||| |||||||||||||||||||||||    
T  13371127 tttcataagctattatgaagagcttatggaaataagctgaaaacaacttat 13371177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 368 - 421
Target Start/End: Original strand, 27792879 - 27792932
Alignment:
Q  368 tgttttcataagctattattgggagcttatagaaataagctgaaaacaacttat 421  Q
    ||||||||||| |||| ||   ||||||||||||||||||||||||||||||||    
T  27792879 tgttttcataaactatcatgtagagcttatagaaataagctgaaaacaacttat 27792932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 362 - 423
Target Start/End: Original strand, 37273135 - 37273196
Alignment:
Q  362 ataaactgttttcataagctattattgggagcttatagaaataagctgaaaacaacttatgg 423  Q
    ||||||||||||||||||||||  | | || ||||| |||||||| ||||||||||||||||    
T  37273135 ataaactgttttcataagctatcttggagaacttatggaaataagttgaaaacaacttatgg 37273196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 368 - 419
Target Start/End: Original strand, 2318651 - 2318703
Alignment:
Q  368 tgttttcataagctattattgg-gagcttatagaaataagctgaaaacaactt 419  Q
    |||||| ||||| |||| |||| ||||||||||||||||||||||||||||||    
T  2318651 tgtttttataagttattcttggagagcttatagaaataagctgaaaacaactt 2318703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 359 - 423
Target Start/End: Original strand, 2719466 - 2719530
Alignment:
Q  359 gctataaactgttttcataagctattattgggagcttatagaaataagctgaaaacaacttatgg 423  Q
    |||||||||||||||||||||||||  | | || |||||  ||||||||||| ||||||||||||    
T  2719466 gctataaactgttttcataagctatcttggagaacttatgaaaataagctgagaacaacttatgg 2719530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 359 - 423
Target Start/End: Original strand, 43115054 - 43115118
Alignment:
Q  359 gctataaactgttttcataagctattattgggagcttatagaaataagctgaaaacaacttatgg 423  Q
    |||||||  ||||||||| | |||| |||| |||||||| |||||||||||||||||| ||||||    
T  43115054 gctataagttgttttcatgaactatcattgagagcttatggaaataagctgaaaacaagttatgg 43115118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 367 - 414
Target Start/End: Original strand, 48528562 - 48528609
Alignment:
Q  367 ctgttttcataagctattattgggagcttatagaaataagctgaaaac 414  Q
    |||||||||||||||||| | | ||| |||||||||||||||||||||    
T  48528562 ctgttttcataagctattctggagagtttatagaaataagctgaaaac 48528609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 423
Target Start/End: Complemental strand, 13709893 - 13709831
Alignment:
Q  361 tataaactgttttcataagctattattgggagcttatagaaataagctgaaaacaacttatgg 423  Q
    ||||| |||||||||||||||||  | | ||| |||| ||||||| |||||||||||||||||    
T  13709893 tataatctgttttcataagctatcctggagagtttattgaaataaactgaaaacaacttatgg 13709831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 391 - 421
Target Start/End: Original strand, 23793614 - 23793644
Alignment:
Q  391 agcttatagaaataagctgaaaacaacttat 421  Q
    |||||||||||||||||||||||||||||||    
T  23793614 agcttatagaaataagctgaaaacaacttat 23793644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 367 - 421
Target Start/End: Complemental strand, 49546548 - 49546494
Alignment:
Q  367 ctgttttcataagctattattgggagcttatagaaataagctgaaaacaacttat 421  Q
    |||||| |||||||||| || | |||||||| |||||| ||||||||||||||||    
T  49546548 ctgtttccataagctatcatggagagcttattgaaatatgctgaaaacaacttat 49546494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 423
Target Start/End: Complemental strand, 12985414 - 12985353
Alignment:
Q  362 ataaactgttttcataagctattattgggagcttatagaaataagctgaaaacaacttatgg 423  Q
    ||||||||||||||||||||||  |   || ||||| ||||||||| |||||||||||||||    
T  12985414 ataaactgttttcataagctatcctcaagaacttatggaaataagccgaaaacaacttatgg 12985353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 423
Target Start/End: Complemental strand, 21862216 - 21862183
Alignment:
Q  390 gagcttatagaaataagctgaaaacaacttatgg 423  Q
    |||||||| |||||||||||||||||||||||||    
T  21862216 gagcttatggaaataagctgaaaacaacttatgg 21862183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 421
Target Start/End: Original strand, 39885545 - 39885598
Alignment:
Q  368 tgttttcataagctattattgggagcttatagaaataagctgaaaacaacttat 421  Q
    ||||||||||||||||  | |||||| ||| ||||||||||||||| |||||||    
T  39885545 tgttttcataagctatcctagggagcatattgaaataagctgaaaataacttat 39885598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 410
Target Start/End: Complemental strand, 48286880 - 48286831
Alignment:
Q  361 tataaactgttttcataagctattattgggagcttatagaaataagctga 410  Q
    ||||||||||||||||||| ||| ||   |||||||||||||||||||||    
T  48286880 tataaactgttttcataagttatcatgtagagcttatagaaataagctga 48286831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 381 - 421
Target Start/End: Complemental strand, 5292570 - 5292530
Alignment:
Q  381 tattattgggagcttatagaaataagctgaaaacaacttat 421  Q
    |||||| | |||||||| |||||||||||||||||||||||    
T  5292570 tattatggagagcttatggaaataagctgaaaacaacttat 5292530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 415
Target Start/End: Complemental strand, 14548793 - 14548737
Alignment:
Q  359 gctataaactgttttcataagctattattgggagcttatagaaataagctgaaaaca 415  Q
    |||||||  |||||||||||| |||| | | |||||||| |||||||||||||||||    
T  14548793 gctataagttgttttcataagttattctggagagcttatggaaataagctgaaaaca 14548737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 412
Target Start/End: Complemental strand, 34254891 - 34254827
Alignment:
Q  348 tttttatacttgctataaactgttttcataagctattattgggagcttatagaaataagctgaaa 412  Q
    |||||||| | |||||||||| ||||||||||||||| | | || |||||  |||||||||||||    
T  34254891 tttttatattagctataaactattttcataagctattctggagaacttatgtaaataagctgaaa 34254827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 390 - 422
Target Start/End: Complemental strand, 45432980 - 45432948
Alignment:
Q  390 gagcttatagaaataagctgaaaacaacttatg 422  Q
    |||||||| ||||||||||||||||||||||||    
T  45432980 gagcttatggaaataagctgaaaacaacttatg 45432948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 373 - 421
Target Start/End: Complemental strand, 54137684 - 54137636
Alignment:
Q  373 tcataagctattattgggagcttatagaaataagctgaaaacaacttat 421  Q
    |||||||||||| | | |||||||| |||||||||||| ||||||||||    
T  54137684 tcataagctattctggtgagcttatggaaataagctgataacaacttat 54137636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 367 - 421
Target Start/End: Complemental strand, 42281578 - 42281524
Alignment:
Q  367 ctgttttcataagctattattgggagcttatagaaataagctgaaaacaacttat 421  Q
    ||||||||||||||||| | || ||||||||||||||||||||||||||| ||||    
T  42281578 ctgttttcataagctatcactgagagcttatagaaataagctgaaaacaaattat 42281524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 364 - 422
Target Start/End: Original strand, 7244683 - 7244741
Alignment:
Q  364 aaactgttttcataagctattattgg-gagcttatagaaataagctgaaaacaacttatg 422  Q
    ||||||||||||||||||| |||||| ||||||||  |||||||||||||||||||||||    
T  7244683 aaactgttttcataagcta-tattggagagcttatgaaaataagctgaaaacaacttatg 7244741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 327 - 423
Target Start/End: Complemental strand, 24363705 - 24363609
Alignment:
Q  327 agatgaaataaagtcaagccatttttatacttgctataaactgttttcataagctattattgggagcttatagaaataagctgaaaacaacttatgg 423  Q
    |||| ||||| |||||| | ||||| ||||  | |||||  ||||||||||||||||  | | ||| |||| |||||||||||||||||||||||||    
T  24363705 agataaaatagagtcaatctattttcatacaggttataagttgttttcataagctatcctggagaggttatggaaataagctgaaaacaacttatgg 24363609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 422
Target Start/End: Original strand, 28165089 - 28165152
Alignment:
Q  359 gctataaactgttttcataagctattattgggagcttatagaaataagctgaaaacaacttatg 422  Q
    |||||||||||| || ||||||||| || | |||||||| |||||||| |||||||| ||||||    
T  28165089 gctataaactgtctttataagctatcatggagagcttatggaaataagttgaaaacagcttatg 28165152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 423
Target Start/End: Complemental strand, 6263433 - 6263372
Alignment:
Q  361 tataaactgttttcataagctattattgggagcttatagaaataagctgaaaacaacttatgg 423  Q
    ||||| ||| |||||||||||||||| | |||| ||| |||||||||| ||||||||||||||    
T  6263433 tataagctgatttcataagctattatggagagcatatggaaataagct-aaaacaacttatgg 6263372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 421
Target Start/End: Complemental strand, 33646032 - 33645971
Alignment:
Q  359 gctataaactgttttcataagctattattgggagcttatagaaataagctgaaaacaacttat 421  Q
    |||||||||||||||||||||||| | | | |||||||| ||||||| || ||||||||||||    
T  33646032 gctataaactgttttcataagcta-tctggagagcttatggaaataacctaaaaacaacttat 33645971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 421
Target Start/End: Complemental strand, 46281212 - 46281150
Alignment:
Q  359 gctataaactgttttcataagctattattgggagcttatagaaataagctgaaaacaacttat 421  Q
    ||||||| ||||||| |||||||||| | | | ||||||| ||||||||||||||||| ||||    
T  46281212 gctataagctgtttttataagctattctggagggcttatataaataagctgaaaacaatttat 46281150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 420
Target Start/End: Original strand, 25596032 - 25596092
Alignment:
Q  360 ctataaactgttttcataagctattattgggagcttatagaaataagctgaaaacaactta 420  Q
    ||||||||| ||||||||||||||  | | ||||||||  ||||||| |||||||||||||    
T  25596032 ctataaactcttttcataagctatcttggagagcttatgaaaataagttgaaaacaactta 25596092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 390 - 422
Target Start/End: Original strand, 35267391 - 35267423
Alignment:
Q  390 gagcttatagaaataagctgaaaacaacttatg 422  Q
    |||||||||||||||||||||||||||| ||||    
T  35267391 gagcttatagaaataagctgaaaacaacctatg 35267423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 361 - 421
Target Start/End: Original strand, 44821959 - 44822019
Alignment:
Q  361 tataaactgttttcataagctattattgggagcttatagaaataagctgaaaacaacttat 421  Q
    ||||| |||||||||||||||||| | | || |||||  ||||||| ||||||||||||||    
T  44821959 tataagctgttttcataagctattctggagaacttatgaaaataagttgaaaacaacttat 44822019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 390 - 418
Target Start/End: Complemental strand, 45859567 - 45859539
Alignment:
Q  390 gagcttatagaaataagctgaaaacaact 418  Q
    |||||||||||||||||||||||||||||    
T  45859567 gagcttatagaaataagctgaaaacaact 45859539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 375 - 423
Target Start/End: Complemental strand, 47134813 - 47134765
Alignment:
Q  375 ataagctattattgggagcttatagaaataagctgaaaacaacttatgg 423  Q
    |||||||||| |||  |||||||  ||||||||||||||||||||||||    
T  47134813 ataagctattcttgaaagcttatgaaaataagctgaaaacaacttatgg 47134765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 359 - 423
Target Start/End: Original strand, 32821807 - 32821871
Alignment:
Q  359 gctataaactgttttcataagctattattgggagcttatagaaataagctgaaaacaacttatgg 423  Q
    |||||||||||||||||||||||||  |   |||||||||||||||| ||||||||| |||||||    
T  32821807 gctataaactgttttcataagctatcctaaagagcttatagaaataaactgaaaacagcttatgg 32821871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 375 - 422
Target Start/End: Original strand, 1647250 - 1647297
Alignment:
Q  375 ataagctattattgggagcttatagaaataagctgaaaacaacttatg 422  Q
    |||||||||||| | |||||||| ||||||||||||||||| ||||||    
T  1647250 ataagctattatagagagcttatggaaataagctgaaaacagcttatg 1647297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 356 - 423
Target Start/End: Original strand, 13056133 - 13056199
Alignment:
Q  356 cttgctataaactgttttcataagctattattgggagcttatagaaataagctgaaaacaacttatgg 423  Q
    ||||||||||  ||||||||||||||||||| | |||||||  ||||||||||  |||||||||||||    
T  13056133 cttgctataagttgttttcataagctattatggagagctta-cgaaataagctacaaacaacttatgg 13056199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 370 - 421
Target Start/End: Original strand, 37034031 - 37034082
Alignment:
Q  370 ttttcataagctattattgggagcttatagaaataagctgaaaacaacttat 421  Q
    |||||||||| |||||| | ||||||||||||||||| ||||||||| ||||    
T  37034031 ttttcataagatattatggagagcttatagaaataagttgaaaacaatttat 37034082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 365 - 423
Target Start/End: Complemental strand, 1939398 - 1939340
Alignment:
Q  365 aactgttttcataagctattattgggagcttatagaaataagctgaaaacaacttatgg 423  Q
    |||||||||||||||||||  | | |||||||| |||||||| |||||||| |||||||    
T  1939398 aactgttttcataagctatactggagagcttatggaaataagttgaaaacagcttatgg 1939340  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 368 - 422
Target Start/End: Complemental strand, 35379079 - 35379025
Alignment:
Q  368 tgttttcataagctattattgggagcttatagaaataagctgaaaacaacttatg 422  Q
    ||||||||||||||||  | | ||||||||  |||||||||||||||||||||||    
T  35379079 tgttttcataagctatcttggagagcttatgaaaataagctgaaaacaacttatg 35379025  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 362 - 420
Target Start/End: Complemental strand, 42817445 - 42817387
Alignment:
Q  362 ataaactgttttcataagctattattgggagcttatagaaataagctgaaaacaactta 420  Q
    ||||||||||||||||||||||| |   |||||||| ||| |||||| |||||||||||    
T  42817445 ataaactgttttcataagctattctgaagagcttatggaagtaagctaaaaacaactta 42817387  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 419
Target Start/End: Complemental strand, 8187522 - 8187465
Alignment:
Q  362 ataaactgttttcataagctattattgggagcttatagaaataagctgaaaacaactt 419  Q
    |||||||||||||||||||||  || | ||| |||| ||||||| |||||||||||||    
T  8187522 ataaactgttttcataagctaccatggagagattatggaaataacctgaaaacaactt 8187465  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 423
Target Start/End: Complemental strand, 25796241 - 25796208
Alignment:
Q  390 gagcttatagaaataagctgaaaacaacttatgg 423  Q
    |||||||| |||||||||||||||||||||||||    
T  25796241 gagcttattgaaataagctgaaaacaacttatgg 25796208  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 423
Target Start/End: Complemental strand, 38077142 - 38077081
Alignment:
Q  362 ataaactgttttcataagctattattgggagcttatagaaataagctgaaaacaacttatgg 423  Q
    ||||||||||||| |||||||| |  | ||||||||||||||| |||||||||  |||||||    
T  38077142 ataaactgttttcttaagctatcacggagagcttatagaaataggctgaaaacctcttatgg 38077081  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 421
Target Start/End: Original strand, 6227759 - 6227811
Alignment:
Q  369 gttttcataagctattattgggagcttatagaaataagctgaaaacaacttat 421  Q
    |||||||||||||||| | | |||||||| | || ||||||||||||||||||    
T  6227759 gttttcataagctattttggagagcttatggtaacaagctgaaaacaacttat 6227811  T

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Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 422
Target Start/End: Original strand, 7871644 - 7871704
Alignment:
Q  362 ataaactgttttcataagctattattgggagcttatagaaataagctgaaaacaacttatg 422  Q
    |||| ||||||||||||||| || |   |||||||| ||||||||||||||||| ||||||    
T  7871644 ataagctgttttcataagctcttttgaagagcttatggaaataagctgaaaacaccttatg 7871704  T

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Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 361 - 413
Target Start/End: Original strand, 36852472 - 36852524
Alignment:
Q  361 tataaactgttttcataagctattattgggagcttatagaaataagctgaaaa 413  Q
    |||||||||||||||||||||||  | | |||||||| ||||||| |||||||    
T  36852472 tataaactgttttcataagctatcttggagagcttatggaaataatctgaaaa 36852524  T

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Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 422
Target Start/End: Original strand, 44443330 - 44443382
Alignment:
Q  370 ttttcataagctattattgggagcttatagaaataagctgaaaacaacttatg 422  Q
    ||||||||||||||  ||| |||| |||  |||||||||||||||||||||||    
T  44443330 ttttcataagctatctttgagagcatatgaaaataagctgaaaacaacttatg 44443382  T

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Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 423
Target Start/End: Complemental strand, 44458434 - 44458346
Alignment:
Q  335 taaagtcaagccatttttatacttgctataaactgttttcataagctattattgggagcttatagaaataagctgaaaacaacttatgg 423  Q
    ||||||||||| ||||| ||   | |||||| ||||||  ||||||||| || | ||| ||||| ||||||||| ||||||||||||||    
T  44458434 taaagtcaagctattttcatgtatactataagctgtttgtataagctatcatggagagtttatataaataagctaaaaacaacttatgg 44458346  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 360 - 423
Target Start/End: Original strand, 4246409 - 4246472
Alignment:
Q  360 ctataaactgttttcataagctattattgggagcttatagaaataagctgaaaacaacttatgg 423  Q
    |||||| |||||||||||||||||||| | |||| |||| ||||||| |||||||| |||||||    
T  4246409 ctataagctgttttcataagctattatggagagcatataaaaataagttgaaaacagcttatgg 4246472  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 371 - 421
Target Start/End: Complemental strand, 20512704 - 20512654
Alignment:
Q  371 tttcataagctattattgggagcttatagaaataagctgaaaacaacttat 421  Q
    ||||||||||||||||   |||||||| |||||||||||||||||||||||    
T  20512704 tttcataagctattatgaagagcttatggaaataagctgaaaacaacttat 20512654  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 359 - 417
Target Start/End: Complemental strand, 28088294 - 28088236
Alignment:
Q  359 gctataaactgttttcataagctattattgggagcttatagaaataagctgaaaacaac 417  Q
    ||||||||||||||||||||||||| || | ||||| || |||||||||| ||||||||    
T  28088294 gctataaactgttttcataagctatcatggagagctcatggaaataagctcaaaacaac 28088236  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 421
Target Start/End: Complemental strand, 281920 - 281858
Alignment:
Q  359 gctataaactgttttcataagctattattgggagcttatagaaataagctgaaaacaacttat 421  Q
    ||||||| |||| ||||||||||||  | | ||||| || |||||||||||||||||||||||    
T  281920 gctataagctgtgttcataagctatcctagagagctcatggaaataagctgaaaacaacttat 281858  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 421
Target Start/End: Original strand, 1401107 - 1401169
Alignment:
Q  359 gctataaactgttttcataagctattattgggagcttatagaaataagctgaaaacaacttat 421  Q
    ||||||| ||||||||||||||||| || | |||||||| || ||||||||| ||||| ||||    
T  1401107 gctataagctgttttcataagctatcatggagagcttatggagataagctgagaacaagttat 1401169  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 379 - 421
Target Start/End: Original strand, 34404107 - 34404149
Alignment:
Q  379 gctattattgggagcttatagaaataagctgaaaacaacttat 421  Q
    |||||||| | ||||||||||||||||| ||||||||||||||    
T  34404107 gctattatggagagcttatagaaataagttgaaaacaacttat 34404149  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 423
Target Start/End: Complemental strand, 27909679 - 27909646
Alignment:
Q  390 gagcttatagaaataagctgaaaacaacttatgg 423  Q
    |||||||| |||||||||||||||||||||||||    
T  27909679 gagcttatggaaataagctgaaaacaacttatgg 27909646  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 421
Target Start/End: Complemental strand, 27998487 - 27998426
Alignment:
Q  360 ctataaactgttttcataagctattattgggagcttatagaaataagctgaaaacaacttat 421  Q
    ||||| |||||||| |||| |||| ||   ||| ||||||||||||||||||||||||||||    
T  27998487 ctatagactgttttaataacctataatgaagagtttatagaaataagctgaaaacaacttat 27998426  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 411
Target Start/End: Original strand, 1402994 - 1403046
Alignment:
Q  359 gctataaactgttttcataagctattattgggagcttatagaaataagctgaa 411  Q
    |||||||| |||||||||||||||| || | || ||||||||||| |||||||    
T  1402994 gctataaattgttttcataagctatcatggagatcttatagaaattagctgaa 1403046  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 420
Target Start/End: Complemental strand, 2460206 - 2460162
Alignment:
Q  376 taagctattattgggagcttatagaaataagctgaaaacaactta 420  Q
    ||||||||||| | |||||||| |||||||| |||||||||||||    
T  2460206 taagctattatggagagcttatggaaataagttgaaaacaactta 2460162  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 415
Target Start/End: Complemental strand, 3168333 - 3168277
Alignment:
Q  359 gctataaactgttttcataagctattattgggagcttatagaaataagctgaaaaca 415  Q
    |||||||||||||||| ||||||||  | | |||||||  |||||||||||||||||    
T  3168333 gctataaactgttttcttaagctatcctggagagcttaaggaaataagctgaaaaca 3168277  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 390 - 422
Target Start/End: Original strand, 6536976 - 6537008
Alignment:
Q  390 gagcttatagaaataagctgaaaacaacttatg 422  Q
    |||||||| ||||||||||||||||||||||||    
T  6536976 gagcttatggaaataagctgaaaacaacttatg 6537008  T

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Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 390 - 422
Target Start/End: Original strand, 30863275 - 30863307
Alignment:
Q  390 gagcttatagaaataagctgaaaacaacttatg 422  Q
    |||||||||||| ||||||||||||||||||||    
T  30863275 gagcttatagaagtaagctgaaaacaacttatg 30863307  T

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Target: scaffold0089 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0089
Description:

Target: scaffold0089; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 371 - 421
Target Start/End: Complemental strand, 33687 - 33637
Alignment:
Q  371 tttcataagctattattgggagcttatagaaataagctgaaaacaacttat 421  Q
    ||||||||||||||||   |||||||| |||||||||||||||||||||||    
T  33687 tttcataagctattatgaagagcttatggaaataagctgaaaacaacttat 33637  T

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