View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13660_low_9 (Length: 397)
Name: NF13660_low_9
Description: NF13660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13660_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 89 - 363
Target Start/End: Complemental strand, 12280522 - 12280248
Alignment:
| Q |
89 |
agtaattcgaaagatataccagatcaaggccttgtatagattaacaacttaattaaacacttaacaaacacatatcagtttatacatgaaagataaagaa |
188 |
Q |
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| T |
12280522 |
agtaattcgaaagatataccagatcaaggccttgtatagattaacaacttaattaaacacttaacaaacacatatcagtttatacatgaaagataaagaa |
12280423 |
T |
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| Q |
189 |
tcatgaaagatgttatgtcatgcagagagtgacttcaaattccaaataaacatttcaaacacacaaatttgggagtatagaattggcaataaactatgtg |
288 |
Q |
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| T |
12280422 |
tcatgaaagatgttatgtcatgcagagagtgacttcaaattccaaataaacatttgaaagacacaaatttgggagtatagaattggcaataaactatgta |
12280323 |
T |
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| Q |
289 |
tacacta-acagaagaaggnnnnnnnnnnnnnnntaagaatcaattatcagatgtatataacaaacaataatagga |
363 |
Q |
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| T |
12280322 |
tacactagacaaaagaagg-aaaaaaaataaaaataagaatcaattatcagatgtatataacaaacaataatagga |
12280248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 178 - 271
Target Start/End: Original strand, 23258350 - 23258443
Alignment:
| Q |
178 |
aagataaagaatcatgaaagatgttatgtcatgcagagagtgacttcaaattccaaataaacatttcaaacacacaaatttgggagtatagaat |
271 |
Q |
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| T |
23258350 |
aagaaaaagaaacatgaaagctcttatgttatgttgagagtgacttcaaattctaaataaacatctcgaagacacaaacttgggagtatagaat |
23258443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 178 - 271
Target Start/End: Original strand, 23276228 - 23276321
Alignment:
| Q |
178 |
aagataaagaatcatgaaagatgttatgtcatgcagagagtgacttcaaattccaaataaacatttcaaacacacaaatttgggagtatagaat |
271 |
Q |
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| T |
23276228 |
aagaaaaagaaacatgaaagctcttatgttatgttgagagtgacttcaaattctaaataaacatctcgaagacacaaacttgggagtatagaat |
23276321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 27542846 - 27542898
Alignment:
| Q |
1 |
ccatgtgtgtaaatacaggactgcaaaaaacaacaatcataaccacagtcagta |
54 |
Q |
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| T |
27542846 |
ccatgtgtgtaaatacaggactgc-aaaaacaacaatcataaccacagtaagta |
27542898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 23258207 - 23258254
Alignment:
| Q |
1 |
ccatgtgtgtaaatacaggactgcaaaaaacaacaatcataaccacagt |
49 |
Q |
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| T |
23258207 |
ccatgtgtgtaaatacaggactgc-aaaaacaacaatcataaccacagt |
23258254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 23276085 - 23276132
Alignment:
| Q |
1 |
ccatgtgtgtaaatacaggactgcaaaaaacaacaatcataaccacagt |
49 |
Q |
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| T |
23276085 |
ccatgtgtgtaaatacaggactgc-aaaaacaacaatcataaccacagt |
23276132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 11136797 - 11136751
Alignment:
| Q |
1 |
ccatgtgtgtaaatacaggactgcaaaaaacaacaatcataaccaca |
47 |
Q |
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| T |
11136797 |
ccatgtgtgtaaatacaggactgcgaaaaacaacaataataatcaca |
11136751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 8985424 - 8985519
Alignment:
| Q |
1 |
ccatgtgtgtaaatacaggactgcaaaaaacaacaatcataaccacagtcagta----attccttgattactactcaagttgcactacaatcagtaa |
93 |
Q |
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| T |
8985424 |
ccatgtgtgtaaatacaggactg-aaaaaacaaaaatcataatcatagtaagtataatattccttgattatttctcatattgcactacaatcagtaa |
8985519 |
T |
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