View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13661_high_1 (Length: 771)
Name: NF13661_high_1
Description: NF13661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13661_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-154; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-154
Query Start/End: Original strand, 231 - 547
Target Start/End: Original strand, 37936933 - 37937250
Alignment:
| Q |
231 |
gtaagctatgtattttggttgtatgtttgtgtctgttaaaaaa-taagcataataagttctgataatagctttgggagattcttctagacagaccacgac |
329 |
Q |
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| T |
37936933 |
gtaagctatgtattttggttgtatgtttgtgtctgttaaaaaaataagcataataagttctgataatagctttgggagattcttctagacagaccacgac |
37937032 |
T |
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| Q |
330 |
aattgagnnnnnnntgattatttataattgacagaatacaaaagctgattttatatagtgatgctaactaaactaacaaatcataactaaattgtaaata |
429 |
Q |
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| T |
37937033 |
aattgataaaaaaatgattatttataattgacagaatacaaaagctgattttatatagtgatgctaactaaactaacaaatcataactaaattgtaatta |
37937132 |
T |
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| Q |
430 |
aaagcaaccaacttgcaattatctagaactaacttcaacttattttaagacttcaactatatagaactaacttcaacagttcaactaattccagctagca |
529 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
37937133 |
aaagcaaccaacttgcaattatctagaactaacttcaacttattttaagacttcaactatatagaactaacttcaacagttcaactaattctagctagca |
37937232 |
T |
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| Q |
530 |
cttcaattagagtaaaca |
547 |
Q |
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|||||||||||||||||| |
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| T |
37937233 |
cttcaattagagtaaaca |
37937250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 155; E-Value: 7e-82
Query Start/End: Original strand, 593 - 751
Target Start/End: Original strand, 37937245 - 37937403
Alignment:
| Q |
593 |
taaacatatcaaaatcgcaaatacacccccgttgtctcttttgtgtgtaattttatggactatatcgactaacggaaaaacacatctaatgactaaaatg |
692 |
Q |
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| T |
37937245 |
taaacatatcaaaatcgcaaatacacccccgttgtctcttttgtgtgtaattttatggactatatcgactaacggaaaaacacatctaatgactaaaatg |
37937344 |
T |
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| Q |
693 |
atcaacagaagacatattcgagaaccaaaatgaccgcctatggagacaccactgagtat |
751 |
Q |
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| T |
37937345 |
atcaacagaagacatattcgagaaccaaaatgaccgcctatggagacaccaccgagtat |
37937403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 17 - 134
Target Start/End: Original strand, 37936820 - 37936937
Alignment:
| Q |
17 |
cataggcatacaaaaggtagaaagcatattgatacccacgatgcttcatattaagaaaaatattaaattgattaaaaatgattaactacctactaacaac |
116 |
Q |
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||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37936820 |
cataggcatacaaaaggcagaaagcatatcgatacccacgatgcttcatattaagaaaaatattaaattgattaaaaatgattaactacctactaacaac |
37936919 |
T |
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| Q |
117 |
cactaactgacttgtaag |
134 |
Q |
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|||||||||||||||||| |
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| T |
37936920 |
cactaactgacttgtaag |
37936937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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