View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13661_low_2 (Length: 359)
Name: NF13661_low_2
Description: NF13661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13661_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 10 - 342
Target Start/End: Complemental strand, 27832243 - 27831913
Alignment:
| Q |
10 |
aagaatatcaaaatataaaccatatatataccattagaaaataaatctttatgtaaatgttttgcattcattgcatacaaaacagcaagacaacacagaa |
109 |
Q |
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| T |
27832243 |
aagaaaatcaaaatataaaccatatatataccattagaaaataaatcttcatgtaaattttttgcattcat-----acaaaacagcaagacaacacagaa |
27832149 |
T |
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| Q |
110 |
aatcttaatggagaaaatcttaaa---gtataatcttaatggnnnnnnnnnnnnnnnnnnnnnctaatcaatcttggcaatagtgttttcaaacatactt |
206 |
Q |
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| T |
27832148 |
aatcttaatggagaaattgttaaaaaagtataatcttaatggaaaaagaaaaaagaaaaaaaactaatcaatcttggcaatagtgttttcaaacatactt |
27832049 |
T |
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| Q |
207 |
tcgagctccttcaaatgatcctgacgaacgtctagttcatgctggtgattctcgtcaagcagatttttggcaattgaaattgcagcattgatcttcgttt |
306 |
Q |
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| T |
27832048 |
tcgagctccttcaaatgatcctgaagaacgtctagttcatgctggtgattctcgtcaagcagatttttggcaattgtaattgcagcattgatcttcgttt |
27831949 |
T |
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| Q |
307 |
tctctagtgtggagagtttcaactgaatattctgct |
342 |
Q |
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| T |
27831948 |
tctctagtgtggagagtttcaactgaatattctgct |
27831913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 194 - 328
Target Start/End: Complemental strand, 27849340 - 27849206
Alignment:
| Q |
194 |
ttcaaacatactttcgagctccttcaaatgatcctgacgaacgtctagttcatgctggtgattctcgtcaagcagatttttggcaattgaaattgcagca |
293 |
Q |
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||||||||||||||| || |||| ||||||||||| | |||| |||| |||||| ||| |||||| ||||||| |||||| || ||| ||||||| || |
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| T |
27849340 |
ttcaaacatactttcaagatcctccaaatgatcctcaagaacatctacttcatgaaggtcattctcatcaagcaaattttttgccattctaattgcaaca |
27849241 |
T |
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| Q |
294 |
ttgatcttcgttttctctagtgtggagagtttcaa |
328 |
Q |
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| T |
27849240 |
ttcatcttcctgttctcttgtgtggagagcttcaa |
27849206 |
T |
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