View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13661_low_3 (Length: 291)
Name: NF13661_low_3
Description: NF13661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13661_low_3 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 14 - 291
Target Start/End: Complemental strand, 16200275 - 16199998
Alignment:
| Q |
14 |
atatgaggttttgcactactattagaaatttccaaagtagaccgatttttctgaggttttgttttcttagcatcctgcgttgaatctttaagctcttcac |
113 |
Q |
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| T |
16200275 |
atatgaggttttgcactactattagaaatttccaaagtagaccgatttttctgaggttttgttttcttagcatccttcgttgaatctttaagctcttcac |
16200176 |
T |
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| Q |
114 |
atttgaatggaattcggtaccctgtctcactgcagcgatatttctcatcaccctataaactccacccaaaaaagcttgtagttaacaacaaagtaaagaa |
213 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16200175 |
atttgaatggaattcggtaccctgtctcactacagcgatatttctcatcaccctataaactccacccaaaaaagcttgtagttaacaacaaagtaaagaa |
16200076 |
T |
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| Q |
214 |
gcctatgaataataacaaggcaaaggacatcatgtatagtacaaagtgagaaggacccaggcatatatataacaaaga |
291 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
16200075 |
gcctatgaataataacaaggcaaaggacatcatgtatagtacaaagtgagaaggacccaggcatacatataacaaaga |
16199998 |
T |
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