View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13661_low_4 (Length: 235)
Name: NF13661_low_4
Description: NF13661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13661_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 14 - 217
Target Start/End: Complemental strand, 42754999 - 42754796
Alignment:
| Q |
14 |
agaatattgagaaggaccaaactcgtatatatatttttgtacacttaaaaccagtttatccgtttggacaagtgaaggtactgaatgagagttaatggag |
113 |
Q |
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|||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42754999 |
agaaaattgagaaggaccaaactcgtatatatatttctctacacttaaaaccagtttatccgtttggacaagtgaaggtactgaatgagagttaatggag |
42754900 |
T |
|
| Q |
114 |
cattgagcttaagaagataagagaaggtgaaaaacaatttgagagaatgaagagaatctatctgaattgtggacaattgggtctcacccctcctacttct |
213 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42754899 |
cattgagcttaagcagataagagaaggtgaaaaacaatttgagagaatgaagagaatctatctgaattgtggacaattgggtctcacccctcctacttct |
42754800 |
T |
|
| Q |
214 |
acta |
217 |
Q |
| |
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|||| |
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| T |
42754799 |
acta |
42754796 |
T |
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