View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13662_high_5 (Length: 327)

Name: NF13662_high_5
Description: NF13662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13662_high_5
NF13662_high_5
[»] chr1 (1 HSPs)
chr1 (72-309)||(43095160-43095397)
[»] chr3 (5 HSPs)
chr3 (72-309)||(6094904-6095141)
chr3 (72-178)||(44162638-44162744)
chr3 (72-178)||(44188758-44188864)
chr3 (208-309)||(44188866-44188967)
chr3 (208-309)||(44162746-44162847)
[»] chr2 (4 HSPs)
chr2 (72-178)||(32727886-32727992)
chr2 (72-178)||(32718902-32719008)
chr2 (208-309)||(32719010-32719111)
chr2 (208-309)||(32727994-32728095)


Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 72 - 309
Target Start/End: Complemental strand, 43095397 - 43095160
Alignment:
Q  72 ttgaacaaatacttacaacagcttgtaacttgtcaagttccttttcgcgtttctgctgcaattggcgttgaaaagattgattctcctcagacattctgat 171  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43095397 ttgaacaaatacttacagcagcttgtaacttgtcaagttccttttcacgtttctgctgcaattggcgttgaaaagattgattctcctcagacattctgat 43095298  T
Q  172 tttcctcgcactaacttgagactgcaatcgcgaaagagtttgcatgcattgtaaagtagtagccgcttgccgctgaactgattgtccttttaccaatgct 271  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  43095297 tttcctcgcactaacttgagattgcaatcgcgaaagagtttgcatgcattgtaaagtagtagccgcttgccgctgaacagattgtccttttaccaatgct 43095198  T
Q  272 ttcaacctcgccaaacctctcaatccacgcaaggtcct 309  Q
    ||||||||||||||||||||||||||||||||||||||    
T  43095197 ttcaacctcgccaaacctctcaatccacgcaaggtcct 43095160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 178; Significance: 5e-96; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 72 - 309
Target Start/End: Original strand, 6094904 - 6095141
Alignment:
Q  72 ttgaacaaatacttacaacagcttgtaacttgtcaagttccttttcgcgtttctgctgcaattggcgttgaaaagattgattctcctcagacattctgat 171  Q
    ||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||    
T  6094904 ttgaacaaatacttacagcagcttgtaacttgtcaagttcattttcacgtttctgctgcaattggcgttgaaaagattgattctcttcagacattcttat 6095003  T
Q  172 tttcctcgcactaacttgagactgcaatcgcgaaagagtttgcatgcattgtaaagtagtagccgcttgccgctgaactgattgtccttttaccaatgct 271  Q
     |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||| || ||||| |||||||||||||||||||||    
T  6095004 cttcctcgcactaacttgagactgcaaccgtgaaagagtttgcatgcattgtaaagtagtagctgcttgtcgttgaacagattgtccttttaccaatgct 6095103  T
Q  272 ttcaacctcgccaaacctctcaatccacgcaaggtcct 309  Q
    ||||||||||||||| || ||||||||||||| |||||    
T  6095104 ttcaacctcgccaaagctttcaatccacgcaacgtcct 6095141  T

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Target: chr3; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 72 - 178
Target Start/End: Original strand, 44162638 - 44162744
Alignment:
Q  72 ttgaacaaatacttacaacagcttgtaacttgtcaagttccttttcgcgtttctgctgcaattggcgttgaaaagattgattctcctcagacattctgat 171  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||| ||||||||||| ||    
T  44162638 ttgaacaaatacttacagcagcttgtaacttgtcaagttccttttcacgattctgctgcaattggcgttgaaaagattcattctcttcagacattcttat 44162737  T
Q  172 tttcctc 178  Q
     ||||||    
T  44162738 cttcctc 44162744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 72 - 178
Target Start/End: Original strand, 44188758 - 44188864
Alignment:
Q  72 ttgaacaaatacttacaacagcttgtaacttgtcaagttccttttcgcgtttctgctgcaattggcgttgaaaagattgattctcctcagacattctgat 171  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||| ||||||||||| ||    
T  44188758 ttgaacaaatacttacagcagcttgtaacttgtcaagttccttttcacgattctgctgcaattggcgttgaaaagattcattctcttcagacattcttat 44188857  T
Q  172 tttcctc 178  Q
     ||||||    
T  44188858 cttcctc 44188864  T

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Target: chr3; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 208 - 309
Target Start/End: Original strand, 44188866 - 44188967
Alignment:
Q  208 agtttgcatgcattgtaaagtagtagccgcttgccgctgaactgattgtccttttaccaatgctttcaacctcgccaaacctctcaatccacgcaaggtc 307  Q
    |||||||||||||||| |||||||||||||||| || |||||  | |||||||||||||||||||||||||||||||||||| ||||||||||||| |||    
T  44188866 agtttgcatgcattgtgaagtagtagccgcttgtcgttgaacataatgtccttttaccaatgctttcaacctcgccaaacctttcaatccacgcaacgtc 44188965  T
Q  308 ct 309  Q
    ||    
T  44188966 ct 44188967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 208 - 309
Target Start/End: Original strand, 44162746 - 44162847
Alignment:
Q  208 agtttgcatgcattgtaaagtagtagccgcttgccgctgaactgattgtccttttaccaatgctttcaacctcgccaaacctctcaatccacgcaaggtc 307  Q
    |||||||||||||||| |||||||||| | ||| || |||||  | |||||||||||||||||||||||||||||||||||| ||||||||||||| |||    
T  44162746 agtttgcatgcattgtgaagtagtagcagattgtcgttgaacaaaatgtccttttaccaatgctttcaacctcgccaaacctttcaatccacgcaacgtc 44162845  T
Q  308 ct 309  Q
    ||    
T  44162846 ct 44162847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 6e-37; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 72 - 178
Target Start/End: Original strand, 32727886 - 32727992
Alignment:
Q  72 ttgaacaaatacttacaacagcttgtaacttgtcaagttccttttcgcgtttctgctgcaattggcgttgaaaagattgattctcctcagacattctgat 171  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||| ||||||||||| ||    
T  32727886 ttgaacaaatacttacagcagcttgtaacttgtcaagttccttttcacgattctgctgcaattggcgttgaaaagattcattctcttcagacattcttat 32727985  T
Q  172 tttcctc 178  Q
     ||||||    
T  32727986 cttcctc 32727992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 72 - 178
Target Start/End: Original strand, 32718902 - 32719008
Alignment:
Q  72 ttgaacaaatacttacaacagcttgtaacttgtcaagttccttttcgcgtttctgctgcaattggcgttgaaaagattgattctcctcagacattctgat 171  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||| ||||||||||| ||    
T  32718902 ttgaataaatacttacagcagcttgtaacttgtcaagttccttttcacgattctgctgcaattggcgttgaaaagattcattctcttcagacattcttat 32719001  T
Q  172 tttcctc 178  Q
     ||||||    
T  32719002 cttcctc 32719008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 208 - 309
Target Start/End: Original strand, 32719010 - 32719111
Alignment:
Q  208 agtttgcatgcattgtaaagtagtagccgcttgccgctgaactgattgtccttttaccaatgctttcaacctcgccaaacctctcaatccacgcaaggtc 307  Q
    |||||||||||||||| |||||||||||||||| || ||||| || |||||||||||||||||||||||||||||||||||| ||||||||||||| |||    
T  32719010 agtttgcatgcattgtgaagtagtagccgcttgtcgttgaacagaatgtccttttaccaatgctttcaacctcgccaaacctttcaatccacgcaacgtc 32719109  T
Q  308 ct 309  Q
    ||    
T  32719110 ct 32719111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 208 - 309
Target Start/End: Original strand, 32727994 - 32728095
Alignment:
Q  208 agtttgcatgcattgtaaagtagtagccgcttgccgctgaactgattgtccttttaccaatgctttcaacctcgccaaacctctcaatccacgcaaggtc 307  Q
    |||||||||||||||| |||||||||| | ||| || |||||  | |||||||||||||||||||||||||||||||||||| ||||||||||||| |||    
T  32727994 agtttgcatgcattgtgaagtagtagcagattgtcgttgaacaaaatgtccttttaccaatgctttcaacctcgccaaacctttcaatccacgcaacgtc 32728093  T
Q  308 ct 309  Q
    ||    
T  32728094 ct 32728095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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