View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13662_low_1 (Length: 530)
Name: NF13662_low_1
Description: NF13662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13662_low_1 |
 | |
|
| [»] chr8 (3 HSPs) |
| |
|
| [»] chr4 (2 HSPs) |
| |
|
| [»] chr1 (3 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 494; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 17 - 530
Target Start/End: Complemental strand, 3061663 - 3061150
Alignment:
| Q |
17 |
acatacaaagaaacaattaaggaaccaccatccaacaatcttcttacataaagagttgcatcattttcactccttttgaatccttgattaagaaagtggc |
116 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3061663 |
acatacaaagagacaattaaggaaccaccatccaacaatcttcttacataaagagttgcatcattttcactccttttgaatccttgattaagaaagtggc |
3061564 |
T |
|
| Q |
117 |
tatcaattttgctataccaagctctaggggcctgtttcagcccatacaaagctttattaagcttatacaccttgtcttccctcccttttaccaaaaaacc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
3061563 |
tatcaattttgctataccaagctctaggggcctgtttcagcccatacaaagctttattaagcttatacaccttgtcttccctccctttcaccaaaaaacc |
3061464 |
T |
|
| Q |
217 |
agcaggttgagcaacataaatttcttcatcaagtttaccattaaagaatgctgatttgacatctaaatgccaaaatttccacttcatttgtgctgccaac |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
3061463 |
agcaggttgagcaacataaatttcttcatcaaggttaccatttaagaatgctgatttgacatctaaatgccaaattttccacttcatttgtgctgccaac |
3061364 |
T |
|
| Q |
317 |
gctacaagaattcgaatagtatccattcttgctaccggtgcaaatgtttctgtgtagtcaatcccggattgttgaacatagcccttgacaacaagtctgg |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3061363 |
gctacaagaattcgaatagtatccattcttgctaccggtgcaaatgtttctgtgtagtcaatcccggattgttgaacatagcccttgacaacaagtctgg |
3061264 |
T |
|
| Q |
417 |
ccttgtatttgttgatggatccatctgggttcatcttgaccctatagacccatttcactcctatgacattcttgtctctaggcttgtcaaccagctgcca |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3061263 |
ccttgtatttgttgatggatccatctgggttcatcttgaccctatagacccatttcactcctatgacattcttgtctctaggcttgtcaaccagctgcca |
3061164 |
T |
|
| Q |
517 |
tgtcttgttctttt |
530 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
3061163 |
tgtcttgttctttt |
3061150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 131 - 285
Target Start/End: Complemental strand, 7160817 - 7160663
Alignment:
| Q |
131 |
taccaagctctaggggcctgtttcagcccatacaaagctttattaagcttatacaccttgtcttccctcccttttaccaaaaaaccagcaggttgagcaa |
230 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||| ||||||| |||| |||| || |||||||| ||| || | |||||| |||||||| ||| |
|
|
| T |
7160817 |
taccaggctctaggcgcctgtttcagcccatacaaggctttatgaagcctataaacattgtcttcatgacctgcaacaataaaaccggcaggttgttcaa |
7160718 |
T |
|
| Q |
231 |
cataaatttcttcatcaagtttaccattaaagaatgctgatttgacatctaaatg |
285 |
Q |
| |
|
|||||||||| || || || | ||||| |||||||| ||||||||||| ||||| |
|
|
| T |
7160717 |
cataaatttcctcctccaggattccatttaagaatgccgatttgacatccaaatg |
7160663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 119 - 285
Target Start/End: Complemental strand, 30048472 - 30048306
Alignment:
| Q |
119 |
tcaattttgctataccaagctctaggggcctgtttcagcccatacaaagctttattaagcttatacaccttgtcttccctcccttttaccaaaaaaccag |
218 |
Q |
| |
|
|||||| |||| ||||| |||||||| |||||||| ||||||||||| ||||| | |||| |||| || ||||||| ||| || | |||||||| |
|
|
| T |
30048472 |
tcaattctgctgtaccaggctctaggcgcctgttttagcccatacaaggctttgtgaagcctataaacactgtcttcatgacctgcaacaataaaaccag |
30048373 |
T |
|
| Q |
219 |
caggttgagcaacataaatttcttcatcaagtttaccattaaagaatgctgatttgacatctaaatg |
285 |
Q |
| |
|
||||||| ||||||||||||| || || || | ||||| |||||||| ||||||||||| ||||| |
|
|
| T |
30048372 |
caggttgttcaacataaatttcctcctccaggattccatttaagaatgccgatttgacatccaaatg |
30048306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 494; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 17 - 530
Target Start/End: Original strand, 17440537 - 17441050
Alignment:
| Q |
17 |
acatacaaagaaacaattaaggaaccaccatccaacaatcttcttacataaagagttgcatcattttcactccttttgaatccttgattaagaaagtggc |
116 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17440537 |
acatacaaagagacaattaaggaaccaccatccaacaatcttcttacataaagagttgcatcattttcactccttttgaatccttgattaagaaagtggc |
17440636 |
T |
|
| Q |
117 |
tatcaattttgctataccaagctctaggggcctgtttcagcccatacaaagctttattaagcttatacaccttgtcttccctcccttttaccaaaaaacc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
17440637 |
tatcaattttgctataccaagctctaggggcctgtttcagcccatacaaagctttattaagcttatacaccttgtcttccctccctttcaccaaaaaacc |
17440736 |
T |
|
| Q |
217 |
agcaggttgagcaacataaatttcttcatcaagtttaccattaaagaatgctgatttgacatctaaatgccaaaatttccacttcatttgtgctgccaac |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
17440737 |
agcaggttgagcaacataaatttcttcatcaaggttaccatttaagaatgctgatttgacatctaaatgccaaattttccacttcatttgtgctgccaac |
17440836 |
T |
|
| Q |
317 |
gctacaagaattcgaatagtatccattcttgctaccggtgcaaatgtttctgtgtagtcaatcccggattgttgaacatagcccttgacaacaagtctgg |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17440837 |
gctacaagaattcgaatagtatccattcttgctaccggtgcaaatgtttctgtgtagtcaatcccggattgttgaacatagcccttgacaacaagtctgg |
17440936 |
T |
|
| Q |
417 |
ccttgtatttgttgatggatccatctgggttcatcttgaccctatagacccatttcactcctatgacattcttgtctctaggcttgtcaaccagctgcca |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17440937 |
ccttgtatttgttgatggatccatctgggttcatcttgaccctatagacccatttcactcctatgacattcttgtctctaggcttgtcaaccagctgcca |
17441036 |
T |
|
| Q |
517 |
tgtcttgttctttt |
530 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
17441037 |
tgtcttgttctttt |
17441050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 131 - 285
Target Start/End: Complemental strand, 3944714 - 3944560
Alignment:
| Q |
131 |
taccaagctctaggggcctgtttcagcccatacaaagctttattaagcttatacaccttgtcttccctcccttttaccaaaaaaccagcaggttgagcaa |
230 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||| ||||||| |||| ||||||| ||||||| ||| || | ||||||||||||||| ||| |
|
|
| T |
3944714 |
taccaggctctaggcgcctgtttcagcccatacaaggctttatgaagcctatacacactgtcttcataacctgcaacaataaaaccagcaggttgttcaa |
3944615 |
T |
|
| Q |
231 |
cataaatttcttcatcaagtttaccattaaagaatgctgatttgacatctaaatg |
285 |
Q |
| |
|
|||||||||| || || || | ||||| |||||||| ||||||||||| ||||| |
|
|
| T |
3944614 |
cataaatttcctcctccaggattccatttaagaatgccgatttgacatccaaatg |
3944560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 494; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 17 - 530
Target Start/End: Complemental strand, 4876306 - 4875793
Alignment:
| Q |
17 |
acatacaaagaaacaattaaggaaccaccatccaacaatcttcttacataaagagttgcatcattttcactccttttgaatccttgattaagaaagtggc |
116 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4876306 |
acatacaaagagacaattaaggaaccaccatccaacaatcttcttacataaagagttgcatcattttcactccttttgaatccttgattaagaaagtggc |
4876207 |
T |
|
| Q |
117 |
tatcaattttgctataccaagctctaggggcctgtttcagcccatacaaagctttattaagcttatacaccttgtcttccctcccttttaccaaaaaacc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
4876206 |
tatcaattttgctataccaagctctaggggcctgtttcagcccatacaaagctttattaagcttatacaccttgtcttccctccctttcaccaaaaaacc |
4876107 |
T |
|
| Q |
217 |
agcaggttgagcaacataaatttcttcatcaagtttaccattaaagaatgctgatttgacatctaaatgccaaaatttccacttcatttgtgctgccaac |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
4876106 |
agcaggttgagcaacataaatttcttcatcaaggttaccatttaagaatgctgatttgacatctaaatgccaaattttccacttcatttgtgctgccaac |
4876007 |
T |
|
| Q |
317 |
gctacaagaattcgaatagtatccattcttgctaccggtgcaaatgtttctgtgtagtcaatcccggattgttgaacatagcccttgacaacaagtctgg |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4876006 |
gctacaagaattcgaatagtatccattcttgctaccggtgcaaatgtttctgtgtagtcaatcccggattgttgaacatagcccttgacaacaagtctgg |
4875907 |
T |
|
| Q |
417 |
ccttgtatttgttgatggatccatctgggttcatcttgaccctatagacccatttcactcctatgacattcttgtctctaggcttgtcaaccagctgcca |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4875906 |
ccttgtatttgttgatggatccatctgggttcatcttgaccctatagacccatttcactcctatgacattcttgtctctaggcttgtcaaccagctgcca |
4875807 |
T |
|
| Q |
517 |
tgtcttgttctttt |
530 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
4875806 |
tgtcttgttctttt |
4875793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 17 - 530
Target Start/End: Complemental strand, 30188923 - 30188410
Alignment:
| Q |
17 |
acatacaaagaaacaattaaggaaccaccatccaacaatcttcttacataaagagttgcatcattttcactccttttgaatccttgattaagaaagtggc |
116 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30188923 |
acatacaaagagacaattaaggaaccaccatccaacaagcttcttacataaagagttgcatcattttcactccttttgaatccttgattaagaaagtgga |
30188824 |
T |
|
| Q |
117 |
tatcaattttgctataccaagctctaggggcctgtttcagcccatacaaagctttattaagcttatacaccttgtcttccctcccttttaccaaaaaacc |
216 |
Q |
| |
|
||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30188823 |
tattaattttgttgtaccaagctctaggggcctgtttcagcccatacaaagctttatgaagcttatacaccttgtcttccctcccttttaccaaaaaacc |
30188724 |
T |
|
| Q |
217 |
agcaggttgagcaacataaatttcttcatcaagtttaccattaaagaatgctgatttgacatctaaatgccaaaatttccacttcatttgtgctgccaac |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||| |||||||||||||| ||||||||| |||||| |||||||| |
|
|
| T |
30188723 |
agcaggttgagcaacataaatttcttcatcaagatttccatttaagaatgctgatttgaaatctaaatgccaaattttccactttatttgtactgccaac |
30188624 |
T |
|
| Q |
317 |
gctacaagaattcgaatagtatccattcttgctaccggtgcaaatgtttctgtgtagtcaatcccggattgttgaacatagcccttgacaacaagtctgg |
416 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
30188623 |
gctacaagaattcgaatagtatccattctagctaccgatggatatgtttctgtgtagtcaatcccggattgttgaacatagcccttgacaacaagcttgg |
30188524 |
T |
|
| Q |
417 |
ccttgtatttgttgatggatccatctgggttcatcttgaccctatagacccatttcactcctatgacattcttgtctctaggcttgtcaaccagctgcca |
516 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30188523 |
ccttgtatttgttgatggatccatttgggttcatctttaccctatagacccattgcactcctatgacattcttgtctctaggcttgtcaaccagctgcca |
30188424 |
T |
|
| Q |
517 |
tgtcttgttctttt |
530 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
30188423 |
tgtcttgttctttt |
30188410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 119 - 171
Target Start/End: Original strand, 17533138 - 17533190
Alignment:
| Q |
119 |
tcaattttgctataccaagctctaggggcctgtttcagcccatacaaagcttt |
171 |
Q |
| |
|
||||| ||||||||| | ||||| || || ||||||||||||||||||||||| |
|
|
| T |
17533138 |
tcaatattgctatacaacgctcttggtgcttgtttcagcccatacaaagcttt |
17533190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 119 - 285
Target Start/End: Original strand, 39950704 - 39950870
Alignment:
| Q |
119 |
tcaattttgctataccaagctctaggggcctgtttcagcccatacaaagctttattaagcttatacaccttgtcttccctcccttttaccaaaaaaccag |
218 |
Q |
| |
|
|||||| |||| ||||| |||||||| |||||||| ||||||||||| ||||| | |||| |||| || ||||||| ||| || | |||||||| |
|
|
| T |
39950704 |
tcaattctgctgtaccaggctctaggcgcctgttttagcccatacaaggctttgtgaagcctataaacactgtcttcatgacctgcaacaataaaaccag |
39950803 |
T |
|
| Q |
219 |
caggttgagcaacataaatttcttcatcaagtttaccattaaagaatgctgatttgacatctaaatg |
285 |
Q |
| |
|
||||||| ||||||||||||| || || || | ||||| |||||||| ||||||||||| ||||| |
|
|
| T |
39950804 |
caggttgttcaacataaatttcctcctccaggattccatttaagaatgccgatttgacatccaaatg |
39950870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 119 - 285
Target Start/End: Original strand, 197543 - 197709
Alignment:
| Q |
119 |
tcaattttgctataccaagctctaggggcctgtttcagcccatacaaagctttattaagcttatacaccttgtcttccctcccttttaccaaaaaaccag |
218 |
Q |
| |
|
|||||| |||| ||||| |||||||| |||||||| ||||||||||| ||||| | |||| |||| || ||||||| ||| || | |||||||| |
|
|
| T |
197543 |
tcaattctgctgtaccaggctctaggcgcctgttttagcccatacaaggctttgtgaagcctataaacactgtcttcatgacctgcaacaataaaaccag |
197642 |
T |
|
| Q |
219 |
caggttgagcaacataaatttcttcatcaagtttaccattaaagaatgctgatttgacatctaaatg |
285 |
Q |
| |
|
||||||| ||||||||||||| || || || | ||||| |||||||| ||||||||||| ||||| |
|
|
| T |
197643 |
caggttgttcaacataaatttcctcctccaggattccatttaagaatgccgatttgacatccaaatg |
197709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 119 - 285
Target Start/End: Complemental strand, 22364354 - 22364188
Alignment:
| Q |
119 |
tcaattttgctataccaagctctaggggcctgtttcagcccatacaaagctttattaagcttatacaccttgtcttccctcccttttaccaaaaaaccag |
218 |
Q |
| |
|
|||||| |||| ||||| |||||||| |||||||||||||||||||| ||||| | |||| |||| || ||||||| || || | |||| ||| |
|
|
| T |
22364354 |
tcaattctgctgtaccaggctctaggcgcctgtttcagcccatacaaggctttgtgaagcctataaacactgtcttcatgatctgcaacaataaaatcag |
22364255 |
T |
|
| Q |
219 |
caggttgagcaacataaatttcttcatcaagtttaccattaaagaatgctgatttgacatctaaatg |
285 |
Q |
| |
|
||||||| ||||||||||||| || || || | ||||| |||||||| ||||||||||| ||||| |
|
|
| T |
22364254 |
caggttgttcaacataaatttcctcctccaggattccatttaagaatgccgatttgacatccaaatg |
22364188 |
T |
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