View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13662_low_2 (Length: 459)
Name: NF13662_low_2
Description: NF13662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13662_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 88 - 436
Target Start/End: Complemental strand, 17841047 - 17840702
Alignment:
| Q |
88 |
gtcttatcataaggtaaggtcagcgatcaaattatagccgacaattttaatagaaaatgttaaacttacaattcaagttattgcnnnnnnnnnncttaca |
187 |
Q |
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| T |
17841047 |
gtcttatcataaggtaaggtcagcgatcaaattatagccgacaattttaatagaaaatgttaaacttacaattcaagttattg-gaaaaaaaaacttaca |
17840949 |
T |
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| Q |
188 |
aacaataaactagtttaatttaaagtctaaacaaggtagacacttaaannnnnnnattaatttccacttatatataaatccaccttagccaagtcgtatt |
287 |
Q |
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| T |
17840948 |
aacaataaactaatttaatttaaagtctaaacaaggtagacactcaaaaaatttcattaatttccacttatata--aatccacctcagccaagtcgtatt |
17840851 |
T |
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| Q |
288 |
attcataaattaaatgattattagggccattagtgtgtgttagaaaattgatacacggaattgacactcaccaccttccaaaatccaccgtccaaattag |
387 |
Q |
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|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17840850 |
attcataaattaaatgattattagggccattaatgtgtattagaaaattgatacactgaattgacactcaccaccttccaaaatccaccgtccaaattag |
17840751 |
T |
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| Q |
388 |
agaatatgacgaaatcaagcatgcactgaatatgaattatgccattaat |
436 |
Q |
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| T |
17840750 |
agaatatgacgaaatcaagcatgcactgaatatgaattatgccattaat |
17840702 |
T |
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