View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13662_low_3 (Length: 366)
Name: NF13662_low_3
Description: NF13662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13662_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 316; Significance: 1e-178; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 13 - 344
Target Start/End: Original strand, 38313726 - 38314057
Alignment:
| Q |
13 |
aatattcatatgataaaatatgattagatacatgtaaaaaaggtatacaccaacagtatatgtaacttaaatctataagttagattgtaggttgagttaa |
112 |
Q |
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| T |
38313726 |
aatattcatatgataaaatatgattagatacatgtaaaaaaggtatacaccaacagtacatgtaacttaaatctataagttagattgtaggttgagttaa |
38313825 |
T |
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| Q |
113 |
aaatgcaaaatatatatgcacaaattcaaaccaaatgcatgattttatatagtcattgatgaaccaaataaattgtcatattatcagaagaagattttaa |
212 |
Q |
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| T |
38313826 |
aaatgcaaaatatatatgcacaaattcaaaccaaatgcatgattttatatagtcattgatgaaccaaataaattgtcatattatcaaaagaagattttaa |
38313925 |
T |
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| Q |
213 |
gtaacaaaatgagaagattaaataattctgagaacataccgctaacaaaggcacaactcaatccaacgggaaaagccatagtgactgtgaaaatcaggag |
312 |
Q |
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| T |
38313926 |
gtaacaaaatgagaagaaaaaataattctgagaacataccgctaacaaaggcacaactcaatccaacgggaaaagccatagtgactgtgaaaatcaggag |
38314025 |
T |
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| Q |
313 |
gaggaagtaattgagagggtgcttgttgtgat |
344 |
Q |
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| T |
38314026 |
gaggaagtaattgagagggtgcttgttgtgat |
38314057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 338
Target Start/End: Original strand, 38272406 - 38272445
Alignment:
| Q |
299 |
gtgaaaatcaggaggaggaagtaattgagagggtgcttgt |
338 |
Q |
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| T |
38272406 |
gtgaaaattaggaggaggaaataattgagagggtgcttgt |
38272445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 249 - 344
Target Start/End: Original strand, 38276069 - 38276164
Alignment:
| Q |
249 |
taccgctaacaaaggcacaactcaatccaacgggaaaagccatagtgactgtgaaaatcaggaggaggaagtaattgagagggtgcttgttgtgat |
344 |
Q |
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| T |
38276069 |
taccgctaaacaaggcccaaatcaatccaattgggaaaggtacagcgaccgtgaaaattaggaggaggaagtgattaagagggtgcttgttatgat |
38276164 |
T |
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