View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13662_low_4 (Length: 350)
Name: NF13662_low_4
Description: NF13662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13662_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 3182545 - 3182211
Alignment:
| Q |
1 |
atgaactcattcttagcatgtatatctgctccactcttgggtgttggtgcagacaattaaaatactggttttggaaatctgtggtttaaaattatagtga |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3182545 |
atgaactcattcttagcatgtatatctgctacactcttgggtgttggtgcagacaattaaaatactggttttggaaatctgtggtttaaaattatagtga |
3182446 |
T |
|
| Q |
101 |
aacctaatatagagtcataaacatgtaagtttgaaataatcagcatagattattagactacatcatctaacctaacagctacatacaggttcaacctcca |
200 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3182445 |
aacctaatatagagtcataaatatgtaagtttgaaataatcagcatagattattagactacatcatctaacctaacagctacatacaggttcaacctcca |
3182346 |
T |
|
| Q |
201 |
acaagcacaccactgtgaatgaatgaaagcaaacaatcacttttgcaaaagagccgtgttgaattaacaaaccaggaccatgtaatgcaacgtgtaattg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
3182345 |
acaagcacaccactgtgaatgaatgaaagcaaacaatcacttttgcaaaagagccgtgttgaattaacaaaccaggactatgtaatgcaacgtgtaattt |
3182246 |
T |
|
| Q |
301 |
tgaacagcgttaaaacgtaatgcacaattaagaag |
335 |
Q |
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|||||||||| |||||||||||||||||||||||| |
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| T |
3182245 |
tgaacagcgtaaaaacgtaatgcacaattaagaag |
3182211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 3176508 - 3176386
Alignment:
| Q |
1 |
atgaactcattcttagcatgtatatctgctccactcttgggtgttggtgcagacaattaaaatactggttttggaaatctgtggtttaaaattatagtga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| ||||||| ||| | ||||||||||| ||| |||||| | ||||| |||| || | ||||| |
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| T |
3176508 |
atgaactcattcttagcatgtatatctgctccacgctt-ggtgttgacgcataaaattaaaataccggtcttggaagtttgtggattaacatcaaagtga |
3176410 |
T |
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| Q |
101 |
aacctaatatagagtcataaacat |
124 |
Q |
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||||||||||| | |||||||||| |
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| T |
3176409 |
aacctaatatacattcataaacat |
3176386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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