View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13662_low_5 (Length: 334)

Name: NF13662_low_5
Description: NF13662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13662_low_5
NF13662_low_5
[»] chr5 (12 HSPs)
chr5 (19-216)||(34475952-34476149)
chr5 (163-215)||(430514-430566)
chr5 (163-221)||(2566238-2566296)
chr5 (163-213)||(15292168-15292218)
chr5 (163-213)||(32269940-32269990)
chr5 (163-220)||(23023502-23023559)
chr5 (294-326)||(34459166-34459198)
chr5 (163-211)||(35310364-35310412)
chr5 (233-264)||(34475919-34475950)
chr5 (174-219)||(15506769-15506814)
chr5 (163-196)||(25663175-25663208)
chr5 (164-221)||(37873782-37873839)
[»] chr8 (10 HSPs)
chr8 (163-278)||(38815143-38815258)
chr8 (163-215)||(3187882-3187934)
chr8 (169-221)||(39434573-39434625)
chr8 (163-216)||(4699782-4699835)
chr8 (168-216)||(500153-500201)
chr8 (163-195)||(8882276-8882308)
chr8 (165-221)||(22589481-22589537)
chr8 (173-264)||(4073397-4073488)
chr8 (163-200)||(24451047-24451084)
chr8 (177-261)||(18804479-18804563)
[»] scaffold0009 (1 HSPs)
scaffold0009 (163-221)||(103012-103070)
[»] chr6 (9 HSPs)
chr6 (163-221)||(3137390-3137448)
chr6 (163-219)||(959489-959545)
chr6 (163-278)||(34168770-34168884)
chr6 (167-221)||(7749387-7749441)
chr6 (171-221)||(17249456-17249506)
chr6 (163-221)||(29338222-29338280)
chr6 (163-201)||(32115644-32115682)
chr6 (171-220)||(34554427-34554476)
chr6 (163-195)||(357859-357891)
[»] chr3 (12 HSPs)
chr3 (163-261)||(26772624-26772722)
chr3 (163-221)||(32546701-32546759)
chr3 (163-248)||(13582389-13582474)
chr3 (163-221)||(39583372-39583430)
chr3 (165-214)||(26276528-26276577)
chr3 (163-215)||(53785621-53785673)
chr3 (163-221)||(26856905-26856963)
chr3 (163-201)||(38671023-38671061)
chr3 (163-280)||(44198614-44198731)
chr3 (165-214)||(49017880-49017929)
chr3 (167-195)||(4763939-4763967)
chr3 (174-222)||(5338551-5338599)
[»] chr7 (11 HSPs)
chr7 (163-214)||(48539094-48539145)
chr7 (163-221)||(45613985-45614043)
chr7 (168-248)||(982828-982908)
chr7 (163-215)||(21326981-21327033)
chr7 (163-231)||(28517430-28517498)
chr7 (165-221)||(45003042-45003098)
chr7 (163-214)||(27027773-27027824)
chr7 (166-213)||(38839240-38839287)
chr7 (163-261)||(5825139-5825237)
chr7 (163-213)||(40726623-40726673)
chr7 (172-221)||(32584506-32584555)
[»] chr1 (10 HSPs)
chr1 (167-270)||(30688414-30688517)
chr1 (163-221)||(24177654-24177712)
chr1 (163-213)||(34644480-34644530)
chr1 (164-214)||(45835330-45835380)
chr1 (165-261)||(5453961-5454057)
chr1 (166-221)||(28493477-28493532)
chr1 (165-215)||(2764391-2764441)
chr1 (171-221)||(2898608-2898658)
chr1 (175-215)||(1114023-1114063)
chr1 (240-276)||(10348636-10348672)
[»] chr4 (13 HSPs)
chr4 (163-221)||(39001303-39001361)
chr4 (165-221)||(53619492-53619548)
chr4 (163-221)||(3329902-3329960)
chr4 (163-213)||(4419177-4419227)
chr4 (163-261)||(30940875-30940973)
chr4 (165-214)||(48657060-48657109)
chr4 (163-278)||(26521338-26521452)
chr4 (165-219)||(45661599-45661653)
chr4 (163-213)||(55933603-55933653)
chr4 (163-196)||(16955391-16955424)
chr4 (172-221)||(50464448-50464497)
chr4 (164-196)||(18981682-18981714)
chr4 (163-215)||(50442622-50442674)
[»] chr2 (8 HSPs)
chr2 (163-219)||(13413259-13413315)
chr2 (163-215)||(17344550-17344602)
chr2 (163-221)||(4413209-4413267)
chr2 (163-221)||(9685558-9685616)
chr2 (186-278)||(30602338-30602430)
chr2 (166-201)||(41868054-41868089)
chr2 (163-221)||(18745097-18745155)
chr2 (163-195)||(44686348-44686380)
[»] scaffold0148 (1 HSPs)
scaffold0148 (163-216)||(33161-33214)


Alignment Details
Target: chr5 (Bit Score: 174; Significance: 1e-93; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 19 - 216
Target Start/End: Complemental strand, 34476149 - 34475952
Alignment:
Q  19 gcacttgcattgcaccacctcttctttgattattttctcctattctctaatctgactgctcccttctacttctattagtattaatctttccttttccttt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || ||||||| |||||||||    
T  34476149 gcacttgcattgcaccacctcttctttgattattttctcctattctccaatctgactgctcccttctacttctattagtcttgatctttcattttccttt 34476050  T
Q  119 cttatttttgatatgatcaacatcattttttgaacaatattgagcctaggtccatgaatgttgtgtttacgaggattgtttttcccgtccaaaaaggc 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  34476049 cttatttttgatatgatcaacatcattttttgaacaatattgagcctaggtccatgaatgttgtgtttacgaagattgttttttccgtccaaaaaggc 34475952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 163 - 215
Target Start/End: Complemental strand, 430566 - 430514
Alignment:
Q  163 cctaggtccatgaatgttgtgtttacgaggattgtttttcccgtccaaaaagg 215  Q
    |||||||||||||||||||||||||||||||||| || | || ||||||||||    
T  430566 cctaggtccatgaatgttgtgtttacgaggattgattatgccatccaaaaagg 430514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 221
Target Start/End: Original strand, 2566238 - 2566296
Alignment:
Q  163 cctaggtccatgaatgttgtgtttacgaggattgtttttcccgtccaaaaaggcctagc 221  Q
    ||||| ||||| |||||||||||||||||||||| |||| || |||||||||| |||||    
T  2566238 cctagatccatcaatgttgtgtttacgaggattgattttgccatccaaaaaggtctagc 2566296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 213
Target Start/End: Original strand, 15292168 - 15292218
Alignment:
Q  163 cctaggtccatgaatgttgtgtttacgaggattgtttttcccgtccaaaaa 213  Q
    ||||||||||||||||||||||||| |||||||| |||| || ||||||||    
T  15292168 cctaggtccatgaatgttgtgtttatgaggattgattttgccatccaaaaa 15292218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 213
Target Start/End: Original strand, 32269940 - 32269990
Alignment:
Q  163 cctaggtccatgaatgttgtgtttacgaggattgtttttcccgtccaaaaa 213  Q
    |||||||||||||||||||||||||||||||||| |||  || ||||||||    
T  32269940 cctaggtccatgaatgttgtgtttacgaggattgatttcgccatccaaaaa 32269990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 163 - 220
Target Start/End: Complemental strand, 23023559 - 23023502
Alignment:
Q  163 cctaggtccatgaatgttgtgtttacgaggattgtttttcccgtccaaaaaggcctag 220  Q
    |||||||| ||||||||||||||||||| ||||| ||||  | |||||||||||||||    
T  23023559 cctaggtcgatgaatgttgtgtttacgaagattgattttgtcatccaaaaaggcctag 23023502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 294 - 326
Target Start/End: Complemental strand, 34459198 - 34459166
Alignment:
Q  294 ttttctctgcttctctttcaccgagcctatgct 326  Q
    |||||||||||||||||||||||||||||||||    
T  34459198 ttttctctgcttctctttcaccgagcctatgct 34459166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 211
Target Start/End: Complemental strand, 35310412 - 35310364
Alignment:
Q  163 cctaggtccatgaatgttgtgtttacgaggattgtttttcccgtccaaa 211  Q
    ||||||||||||||||||||||||||||| |||| |||| || ||||||    
T  35310412 cctaggtccatgaatgttgtgtttacgagaattggttttgccatccaaa 35310364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 233 - 264
Target Start/End: Complemental strand, 34475950 - 34475919
Alignment:
Q  233 ttacctgcttgccttccgttcatgtgtaatta 264  Q
    ||||||||||||||||||||||||||||||||    
T  34475950 ttacctgcttgccttccgttcatgtgtaatta 34475919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 219
Target Start/End: Original strand, 15506769 - 15506814
Alignment:
Q  174 gaatgttgtgtttacgaggattgtttttcccgtccaaaaaggccta 219  Q
    ||||||||||||||||||||||| |||| || || |||||||||||    
T  15506769 gaatgttgtgtttacgaggattgattttaccatcaaaaaaggccta 15506814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 196
Target Start/End: Original strand, 25663175 - 25663208
Alignment:
Q  163 cctaggtccatgaatgttgtgtttacgaggattg 196  Q
    ||||||||||||||||||| ||||||||||||||    
T  25663175 cctaggtccatgaatgttgagtttacgaggattg 25663208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 221
Target Start/End: Original strand, 37873782 - 37873839
Alignment:
Q  164 ctaggtccatgaatgttgtgtttacgaggattgtttttcccgtccaaaaaggcctagc 221  Q
    ||||||| |||||||||||||||| |||||||| |||| |  || |||||||||||||    
T  37873782 ctaggtctatgaatgttgtgtttaagaggattgattttgctatcaaaaaaggcctagc 37873839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 163 - 278
Target Start/End: Complemental strand, 38815258 - 38815143
Alignment:
Q  163 cctaggtccatgaatgttgtgtttacgaggattgtttttcccgtccaaaaaggcctagctacactgctttttacctgcttgccttccgttcatgtgtaat 262  Q
    |||||||||||||||||||||||||||||||||| |||| || ||||||||||| ||||  | | |||| || || ||||||||||  |||||||||||     
T  38815258 cctaggtccatgaatgttgtgtttacgaggattggtttttccatccaaaaaggcttagcggcgcagcttgttgcccgcttgccttctattcatgtgtaag 38815159  T
Q  263 tagtcattgatatata 278  Q
     | || ||||||||||    
T  38815158 caatccttgatatata 38815143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 163 - 215
Target Start/End: Complemental strand, 3187934 - 3187882
Alignment:
Q  163 cctaggtccatgaatgttgtgtttacgaggattgtttttcccgtccaaaaagg 215  Q
    ||||||||||||||||||||||||||||| |||| |||| || ||||||||||    
T  3187934 cctaggtccatgaatgttgtgtttacgagaattggttttgccatccaaaaagg 3187882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 169 - 221
Target Start/End: Complemental strand, 39434625 - 39434573
Alignment:
Q  169 tccatgaatgttgtgtttacgaggattgtttttcccgtccaaaaaggcctagc 221  Q
    |||||||||||||||||||||||||||| |||| || |||||||||| |||||    
T  39434625 tccatgaatgttgtgtttacgaggattgattttgccatccaaaaaggtctagc 39434573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 163 - 216
Target Start/End: Complemental strand, 4699835 - 4699782
Alignment:
Q  163 cctaggtccatgaatgttgtgtttacgaggattgtttttcccgtccaaaaaggc 216  Q
    |||||||||||||||||||||||||| ||||||  |||| || |||||||||||    
T  4699835 cctaggtccatgaatgttgtgtttacaaggattagttttgccatccaaaaaggc 4699782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 216
Target Start/End: Complemental strand, 500201 - 500153
Alignment:
Q  168 gtccatgaatgttgtgtttacgaggattgtttttcccgtccaaaaaggc 216  Q
    ||||||||||||||||||||||||||||| |||| || | |||||||||    
T  500201 gtccatgaatgttgtgtttacgaggattgattttaccattcaaaaaggc 500153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 195
Target Start/End: Complemental strand, 8882308 - 8882276
Alignment:
Q  163 cctaggtccatgaatgttgtgtttacgaggatt 195  Q
    |||||||||||||||||||||||||||||||||    
T  8882308 cctaggtccatgaatgttgtgtttacgaggatt 8882276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 221
Target Start/End: Original strand, 22589481 - 22589537
Alignment:
Q  165 taggtccatgaatgttgtgtttacgaggattgtttttcccgtccaaaaaggcctagc 221  Q
    |||||| |||||||||||||| |||||||||| |||| || |||||||||| |||||    
T  22589481 taggtctatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagc 22589537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 173 - 264
Target Start/End: Complemental strand, 4073488 - 4073397
Alignment:
Q  173 tgaatgttgtgtttacgaggattgtttttcccgtccaaaaaggcctagctacactgctttttacctgcttgccttccgttcatgtgtaatta 264  Q
    ||||||||||||||||||| |||| ||||  | |||||||| || |||| ||||  ||| || || |||||||||||  |||||||||||||    
T  4073488 tgaatgttgtgtttacgagaattgattttatcatccaaaaaagcttagcgacacaacttgtttcccgcttgccttccaatcatgtgtaatta 4073397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 200
Target Start/End: Complemental strand, 24451084 - 24451047
Alignment:
Q  163 cctaggtccatgaatgttgtgtttacgaggattgtttt 200  Q
    ||||||||||||||||||||||| |||| |||||||||    
T  24451084 cctaggtccatgaatgttgtgttcacgatgattgtttt 24451047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 261
Target Start/End: Complemental strand, 18804563 - 18804479
Alignment:
Q  177 tgttgtgtttacgaggattgtttttcccgtccaaaaaggcctagctacactgctttttacctgcttgccttccgttcatgtgtaa 261  Q
    |||| ||||||||||||||| |||| || |||||||||| |||||  | | |||| || |||||||||||||  |||| ||||||    
T  18804563 tgttttgtttacgaggattggttttgccatccaaaaaggtctagcggcgcagcttgttgcctgcttgccttctattcaagtgtaa 18804479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 163 - 221
Target Start/End: Complemental strand, 103070 - 103012
Alignment:
Q  163 cctaggtccatgaatgttgtgtttacgaggattgtttttcccgtccaaaaaggcctagc 221  Q
    |||||||||||||||||||||||||||||||||| |||| || |||||||||| |||||    
T  103070 cctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggtctagc 103012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 163 - 221
Target Start/End: Original strand, 3137390 - 3137448
Alignment:
Q  163 cctaggtccatgaatgttgtgtttacgaggattgtttttcccgtccaaaaaggcctagc 221  Q
    |||||||||||||||||||||||||||||||||| |||| || ||||||||||| ||||    
T  3137390 cctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagc 3137448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 163 - 219
Target Start/End: Complemental strand, 959545 - 959489
Alignment:
Q  163 cctaggtccatgaatgttgtgtttacgaggattgtttttcccgtccaaaaaggccta 219  Q
    |||||||||||||||||||||||||||||||||| ||||  | || |||||||||||    
T  959545 cctaggtccatgaatgttgtgtttacgaggattgattttgtcatctaaaaaggccta 959489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 163 - 278
Target Start/End: Complemental strand, 34168884 - 34168770
Alignment:
Q  163 cctaggtccatgaatgttgtgtttacgaggattgtttttcccgtccaaaaaggcctagctacactgctttttacctgcttgccttccgttcatgtgtaat 262  Q
    ||||| ||||||||||||||||| |||||||||| |||| |  ||||||||||||||||  | |  ||| |  || ||||||||||  ||||||||||||    
T  34168884 cctagatccatgaatgttgtgtt-acgaggattggttttgctatccaaaaaggcctagcggcgcaacttgtcgcccgcttgccttctattcatgtgtaat 34168786  T
Q  263 tagtcattgatatata 278  Q
    || ||||| |||||||    
T  34168785 taatcatttatatata 34168770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 221
Target Start/End: Complemental strand, 7749441 - 7749387
Alignment:
Q  167 ggtccatgaatgttgtgtttacgaggattgtttttcccgtccaaaaaggcctagc 221  Q
    |||||||||||||||||||||||||||||| |||| || ||| |||||| |||||    
T  7749441 ggtccatgaatgttgtgtttacgaggattggttttgccatcctaaaaggtctagc 7749387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 221
Target Start/End: Original strand, 17249456 - 17249506
Alignment:
Q  171 catgaatgttgtgtttacgaggattgtttttcccgtccaaaaaggcctagc 221  Q
    |||||||||||||||||||||||||| |||| || |||||||||| |||||    
T  17249456 catgaatgttgtgtttacgaggattggttttgccatccaaaaaggtctagc 17249506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 221
Target Start/End: Original strand, 29338222 - 29338280
Alignment:
Q  163 cctaggtccatgaatgttgtgtttacgaggattgtttttcccgtccaaaaaggcctagc 221  Q
    |||||||||||||||||||||||||| ||||||| |||| |  ||||||| ||||||||    
T  29338222 cctaggtccatgaatgttgtgtttacaaggattgatttttctatccaaaatggcctagc 29338280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 201
Target Start/End: Complemental strand, 32115682 - 32115644
Alignment:
Q  163 cctaggtccatgaatgttgtgtttacgaggattgttttt 201  Q
    |||||||||||||||||||||||||||| ||||| ||||    
T  32115682 cctaggtccatgaatgttgtgtttacgatgattgatttt 32115644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 220
Target Start/End: Original strand, 34554427 - 34554476
Alignment:
Q  171 catgaatgttgtgtttacgaggattgtttttcccgtccaaaaaggcctag 220  Q
    ||||||| |||||||||||||||||| ||||  | |||||||||||||||    
T  34554427 catgaattttgtgtttacgaggattgattttgtcatccaaaaaggcctag 34554476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 195
Target Start/End: Original strand, 357859 - 357891
Alignment:
Q  163 cctaggtccatgaatgttgtgtttacgaggatt 195  Q
    |||||||||||||||||||||||||||| ||||    
T  357859 cctaggtccatgaatgttgtgtttacgaagatt 357891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 163 - 261
Target Start/End: Complemental strand, 26772722 - 26772624
Alignment:
Q  163 cctaggtccatgaatgttgtgtttacgaggattgtttttcccgtccaaaaaggcctagctacactgctttttacctgcttgccttccgttcatgtgtaa 261  Q
    |||||||||||||||||||||||||||||||||| |||| || |||||||||| |||||  | | |||| || || |||||||| |  |||||||||||    
T  26772722 cctaggtccatgaatgttgtgtttacgaggattgattttgccatccaaaaaggtctagcggcgcagcttgttgcccgcttgcctcctattcatgtgtaa 26772624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 163 - 221
Target Start/End: Complemental strand, 32546759 - 32546701
Alignment:
Q  163 cctaggtccatgaatgttgtgtttacgaggattgtttttcccgtccaaaaaggcctagc 221  Q
    ||||||||||||||||||||||| |||||||||| |||| || |||||||||| |||||    
T  32546759 cctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagc 32546701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 248
Target Start/End: Complemental strand, 13582474 - 13582389
Alignment:
Q  163 cctaggtccatgaatgttgtgtttacgaggattgtttttcccgtccaaaaaggcctagctacactgctttttacctgcttgccttc 248  Q
    |||||| ||||||||||||||||||||| ||||| |||  || |||||||||||||||| || ||| || || || ||||||||||    
T  13582474 cctaggaccatgaatgttgtgtttacgaagattgatttagccatccaaaaaggcctagcgacgctgtttattgcccgcttgccttc 13582389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 221
Target Start/End: Original strand, 39583372 - 39583430
Alignment:
Q  163 cctaggtccatgaatgttgtgtttacgaggattgtttttcccgtccaaaaaggcctagc 221  Q
    ||||||| ||||||||| |||||||||||||||| |||| || |||||||||| |||||    
T  39583372 cctaggttcatgaatgtcgtgtttacgaggattgattttgccatccaaaaaggtctagc 39583430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 165 - 214
Target Start/End: Complemental strand, 26276577 - 26276528
Alignment:
Q  165 taggtccatgaatgttgtgtttacgaggattgtttttcccgtccaaaaag 214  Q
    ||||||||||||||||||||||| |||||||| |||| || |||||||||    
T  26276577 taggtccatgaatgttgtgtttatgaggattgattttgccatccaaaaag 26276528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 215
Target Start/End: Complemental strand, 53785673 - 53785621
Alignment:
Q  163 cctaggtccatgaatgttgtgtttacgaggattgtttttcccgtccaaaaagg 215  Q
    |||||||||||||||||| ||||||||||||||| |||| || ||||| ||||    
T  53785673 cctaggtccatgaatgttatgtttacgaggattggttttgccatccaacaagg 53785621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 221
Target Start/End: Original strand, 26856905 - 26856963
Alignment:
Q  163 cctaggtccatgaatgttgtgtttacgaggattgtttttcccgtccaaaaaggcctagc 221  Q
    |||||||  |||||||||||| || ||||||||| |||| || ||||||||||||||||    
T  26856905 cctaggtttatgaatgttgtgcttgcgaggattggttttaccatccaaaaaggcctagc 26856963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 201
Target Start/End: Original strand, 38671023 - 38671061
Alignment:
Q  163 cctaggtccatgaatgttgtgtttacgaggattgttttt 201  Q
    |||||||||||||||||||||| ||||||||||| ||||    
T  38671023 cctaggtccatgaatgttgtgtgtacgaggattggtttt 38671061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 280
Target Start/End: Complemental strand, 44198731 - 44198614
Alignment:
Q  163 cctaggtccatgaatgttgtgtttacgaggattgtttttcccgtccaaaaaggcctagctacactgctttttacctgcttgccttccgttcatgtgtaat 262  Q
    |||||||||||||||||||||||| |||  |||| |||| || ||||||||||   ||| |||| |||| ||  | ||||||||||  |||| ||||||     
T  44198731 cctaggtccatgaatgttgtgtttgcgataattgattttgccatccaaaaaggttgagcgacacagcttgttgtccgcttgccttctattcaagtgtaaa 44198632  T
Q  263 tagtcattgatatataca 280  Q
    || | ||| |||||||||    
T  44198631 taataatttatatataca 44198614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 214
Target Start/End: Complemental strand, 49017929 - 49017880
Alignment:
Q  165 taggtccatgaatgttgtgtttacgaggattgtttttcccgtccaaaaag 214  Q
    |||||| |||||||||||||||| |||||||| |||| || |||||||||    
T  49017929 taggtcaatgaatgttgtgtttatgaggattgattttgccatccaaaaag 49017880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 195
Target Start/End: Original strand, 4763939 - 4763967
Alignment:
Q  167 ggtccatgaatgttgtgtttacgaggatt 195  Q
    |||||||||||||||||||||||||||||    
T  4763939 ggtccatgaatgttgtgtttacgaggatt 4763967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 222
Target Start/End: Complemental strand, 5338599 - 5338551
Alignment:
Q  174 gaatgttgtgtttacgaggattgtttttcccgtccaaaaaggcctagct 222  Q
    ||||||||||||||||||||||| |||| || ||||||| || ||||||    
T  5338599 gaatgttgtgtttacgaggattggttttgccatccaaaatggtctagct 5338551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 163 - 214
Target Start/End: Complemental strand, 48539145 - 48539094
Alignment:
Q  163 cctaggtccatgaatgttgtgtttacgaggattgtttttcccgtccaaaaag 214  Q
    |||||||||||||||||||||||||||||||||| |||| || |||||||||    
T  48539145 cctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaag 48539094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 163 - 221
Target Start/End: Original strand, 45613985 - 45614043
Alignment:
Q  163 cctaggtccatgaatgttgtgtttacgaggattgtttttcccgtccaaaaaggcctagc 221  Q
    |||||||||||||||||||||||||||||||||| |||| || ||| |||||| |||||    
T  45613985 cctaggtccatgaatgttgtgtttacgaggattggttttgccatccgaaaaggtctagc 45614043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 168 - 248
Target Start/End: Complemental strand, 982908 - 982828
Alignment:
Q  168 gtccatgaatgttgtgtttacgaggattgtttttcccgtccaaaaaggcctagctacactgctttttacctgcttgccttc 248  Q
    |||||||||||||||||| |||||||||| | || || |||||||||| ||||| |||| |||| || |||| ||||||||    
T  982908 gtccatgaatgttgtgttcacgaggattggtattgccatccaaaaaggtctagcgacacagcttgttgcctgtttgccttc 982828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 163 - 215
Target Start/End: Original strand, 21326981 - 21327033
Alignment:
Q  163 cctaggtccatgaatgttgtgtttacgaggattgtttttcccgtccaaaaagg 215  Q
    ||||||||||||||||||||||| |||||||||| |||| || ||||||||||    
T  21326981 cctaggtccatgaatgttgtgttcacgaggattgattttgccatccaaaaagg 21327033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 163 - 231
Target Start/End: Original strand, 28517430 - 28517498
Alignment:
Q  163 cctaggtccatgaatgttgtgtttacgaggattgtttttcccgtccaaaaaggcctagctacactgctt 231  Q
    |||| ||||||||||||||||||||||||||||| |||| || |||||||| | ||||| |||| ||||    
T  28517430 cctaagtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaagtctagcgacacagctt 28517498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 221
Target Start/End: Original strand, 45003042 - 45003098
Alignment:
Q  165 taggtccatgaatgttgtgtttacgaggattgtttttcccgtccaaaaaggcctagc 221  Q
    |||| ||||||||||||||||||||| ||||| |||| || |||||||||| |||||    
T  45003042 taggaccatgaatgttgtgtttacgaagattgattttgccatccaaaaaggtctagc 45003098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 163 - 214
Target Start/End: Original strand, 27027773 - 27027824
Alignment:
Q  163 cctaggtccatgaatgttgtgtttacgaggattgtttttcccgtccaaaaag 214  Q
    ||||||||||||||||||||||| |||||||||| |||| |  |||||||||    
T  27027773 cctaggtccatgaatgttgtgttcacgaggattggttttgctatccaaaaag 27027824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 166 - 213
Target Start/End: Complemental strand, 38839287 - 38839240
Alignment:
Q  166 aggtccatgaatgttgtgtttacgaggattgtttttcccgtccaaaaa 213  Q
    ||||||||||||||||||||||||| ||||| |||| || ||||||||    
T  38839287 aggtccatgaatgttgtgtttacgaagattggttttaccatccaaaaa 38839240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 261
Target Start/End: Complemental strand, 5825237 - 5825139
Alignment:
Q  163 cctaggtccatgaatgttgtgtttacgaggattgtttttcccgtccaaaaaggcctagctacactgctttttacctgcttgccttccgttcatgtgtaa 261  Q
    |||||||| ||| ||||||||||||||||||||| |||| || || ||||||| ||  |  | | |||| |||||||||||||| |  |||||||||||    
T  5825237 cctaggtctatggatgttgtgtttacgaggattggttttgccatcgaaaaaggtcttacggcgcagcttgttacctgcttgcctcctattcatgtgtaa 5825139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 213
Target Start/End: Original strand, 40726623 - 40726673
Alignment:
Q  163 cctaggtccatgaatgttgtgtttacgaggattgtttttcccgtccaaaaa 213  Q
    ||||| ||||||||||||||||||| |||||||| |||| || ||||||||    
T  40726623 cctagatccatgaatgttgtgtttatgaggattgattttgccatccaaaaa 40726673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 32584555 - 32584506
Alignment:
Q  172 atgaatgttgtgtttacgaggattgtttttcccgtccaaaaaggcctagc 221  Q
    ||||||||||||||||| | ||||| |||| || ||||||||||||||||    
T  32584555 atgaatgttgtgtttacaaagattgattttaccatccaaaaaggcctagc 32584506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 167 - 270
Target Start/End: Complemental strand, 30688517 - 30688414
Alignment:
Q  167 ggtccatgaatgttgtgtttacgaggattgtttttcccgtccaaaaaggcctagctacactgctttttacctgcttgccttccgttcatgtgtaattagt 266  Q
    |||||||||||||||||||||||||||||| ||||    ||||||||||||||||  | | |||| || || ||||||| ||  |||||||||||||| |    
T  30688517 ggtccatgaatgttgtgtttacgaggattggttttgttatccaaaaaggcctagcggcgcagcttgttgcccgcttgccatctattcatgtgtaattaat 30688418  T
Q  267 catt 270  Q
    ||||    
T  30688417 catt 30688414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 221
Target Start/End: Original strand, 24177654 - 24177712
Alignment:
Q  163 cctaggtccatgaatgttgtgtttacgaggattgtttttcccgtccaaaaaggcctagc 221  Q
    ||||||||||||||||||||||| |||||||||| |||| ||  ||||||||| |||||    
T  24177654 cctaggtccatgaatgttgtgttcacgaggattggttttgccaaccaaaaaggtctagc 24177712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 213
Target Start/End: Complemental strand, 34644530 - 34644480
Alignment:
Q  163 cctaggtccatgaatgttgtgtttacgaggattgtttttcccgtccaaaaa 213  Q
    |||||||||||||||||||||||||||| ||||| |||| || ||||||||    
T  34644530 cctaggtccatgaatgttgtgtttacgatgattgattttgccatccaaaaa 34644480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 214
Target Start/End: Original strand, 45835330 - 45835380
Alignment:
Q  164 ctaggtccatgaatgttgtgtttacgaggattgtttttcccgtccaaaaag 214  Q
    ||||||| ||||||||||||||||||||||||| |||| || |||||||||    
T  45835330 ctaggtctatgaatgttgtgtttacgaggattgattttgccatccaaaaag 45835380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 261
Target Start/End: Complemental strand, 5454057 - 5453961
Alignment:
Q  165 taggtccatgaatgttgtgtttacgaggattgtttttcccgtccaaaaaggcctagctacactgctttttacctgcttgccttccgttcatgtgtaa 261  Q
    |||||||||||||||||||||||| ||||||| ||||  | |||||||||| |||||  | | |||| || || |||||||| |  |||||||||||    
T  5454057 taggtccatgaatgttgtgtttacaaggattggttttgtcatccaaaaaggtctagcggcgcagcttgttgcccgcttgcctcctattcatgtgtaa 5453961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 166 - 221
Target Start/End: Original strand, 28493477 - 28493532
Alignment:
Q  166 aggtccatgaatgttgtgtttacgaggattgtttttcccgtccaaaaaggcctagc 221  Q
    ||||||||||||||| |||| |||||||||| |||| || |||||||||| |||||    
T  28493477 aggtccatgaatgttatgttcacgaggattgattttgccatccaaaaaggtctagc 28493532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 215
Target Start/End: Complemental strand, 2764441 - 2764391
Alignment:
Q  165 taggtccatgaatgttgtgtttacgaggattgtttttcccgtccaaaaagg 215  Q
    ||||||||| |||||||||||||||| ||||| |||| || ||||||||||    
T  2764441 taggtccataaatgttgtgtttacgatgattgattttaccatccaaaaagg 2764391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 221
Target Start/End: Complemental strand, 2898658 - 2898608
Alignment:
Q  171 catgaatgttgtgtttacgaggattgtttttcccgtccaaaaaggcctagc 221  Q
    ||||||||||||||||| |||||||| |||| || ||||||||||| ||||    
T  2898658 catgaatgttgtgtttaagaggattgattttgccatccaaaaaggcttagc 2898608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 215
Target Start/End: Original strand, 1114023 - 1114063
Alignment:
Q  175 aatgttgtgtttacgaggattgtttttcccgtccaaaaagg 215  Q
    |||||||||||||||||||||| |||| || ||||||||||    
T  1114023 aatgttgtgtttacgaggattggttttgccatccaaaaagg 1114063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 276
Target Start/End: Original strand, 10348636 - 10348672
Alignment:
Q  240 cttgccttccgttcatgtgtaattagtcattgatata 276  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  10348636 cttgtcttccattcatgtgtaattagtcattgatata 10348672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 163 - 221
Target Start/End: Complemental strand, 39001361 - 39001303
Alignment:
Q  163 cctaggtccatgaatgttgtgtttacgaggattgtttttcccgtccaaaaaggcctagc 221  Q
    |||||||||||||||||||||||||||||||||| ||||  | |||||||||| |||||    
T  39001361 cctaggtccatgaatgttgtgtttacgaggattggttttgtcatccaaaaaggtctagc 39001303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 165 - 221
Target Start/End: Complemental strand, 53619548 - 53619492
Alignment:
Q  165 taggtccatgaatgttgtgtttacgaggattgtttttcccgtccaaaaaggcctagc 221  Q
    ||||||||||||||||||||||||||| |||| |||| || |||||||||| |||||    
T  53619548 taggtccatgaatgttgtgtttacgagaattggttttgccatccaaaaaggtctagc 53619492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 221
Target Start/End: Complemental strand, 3329960 - 3329902
Alignment:
Q  163 cctaggtccatgaatgttgtgtttacgaggattgtttttcccgtccaaaaaggcctagc 221  Q
    |||||||||||||||| ||||||||||| ||||| |||| || |||||||||| |||||    
T  3329960 cctaggtccatgaatgctgtgtttacgatgattggttttgccatccaaaaaggtctagc 3329902  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 213
Target Start/End: Complemental strand, 4419227 - 4419177
Alignment:
Q  163 cctaggtccatgaatgttgtgtttacgaggattgtttttcccgtccaaaaa 213  Q
    |||||||||||||||||||||||||||| ||||| |||| || ||||||||    
T  4419227 cctaggtccatgaatgttgtgtttacgatgattggttttgccatccaaaaa 4419177  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 261
Target Start/End: Original strand, 30940875 - 30940973
Alignment:
Q  163 cctaggtccatgaatgttgtgtttacgaggattgtttttcccgtccaaaaaggcctagctacactgctttttacctgcttgccttccgttcatgtgtaa 261  Q
    |||||||| |||||||||||||| | |||||||| |||| || |||||||||| ||||| || | |||| || || ||||||||||  |||| ||||||    
T  30940875 cctaggtctatgaatgttgtgttcatgaggattgattttgccatccaaaaaggtctagcgacgcagcttgttgcccgcttgccttctattcaagtgtaa 30940973  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 165 - 214
Target Start/End: Original strand, 48657060 - 48657109
Alignment:
Q  165 taggtccatgaatgttgtgtttacgaggattgtttttcccgtccaaaaag 214  Q
    |||||| ||||||||||||||||||| ||||| |||| ||||||||||||    
T  48657060 taggtctatgaatgttgtgtttacgatgattgattttgccgtccaaaaag 48657109  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 163 - 278
Target Start/End: Complemental strand, 26521452 - 26521338
Alignment:
Q  163 cctaggtccatgaatgttgtgtttacgaggattgtttttcccgtccaaaaaggcctagctacactgctttttacctgcttgccttccgttcatgtgtaat 262  Q
    |||||| |||||| |||||||||||||||||||| ||||  | ||||||||||  ||||  ||| |||||||  | ||||||||||  | |||||||||     
T  26521452 cctaggcccatga-tgttgtgtttacgaggattggttttgtcatccaaaaaggtttagcggcacagctttttgtccgcttgccttctatccatgtgtaag 26521354  T
Q  263 tagtcattgatatata 278  Q
    || || ||||||||||    
T  26521353 taatccttgatatata 26521338  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 219
Target Start/End: Complemental strand, 45661653 - 45661599
Alignment:
Q  165 taggtccatgaatgttgtgtttacgaggattgtttttcccgtccaaaaaggccta 219  Q
    ||||||||||||| |||||||||||||||||| |||| |  ||||||||| ||||    
T  45661653 taggtccatgaatattgtgtttacgaggattggttttactatccaaaaagaccta 45661599  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 213
Target Start/End: Original strand, 55933603 - 55933653
Alignment:
Q  163 cctaggtccatgaatgttgtgtttacgaggattgtttttcccgtccaaaaa 213  Q
    ||||||||| |||||||||||||||||| ||||| |||| || ||||||||    
T  55933603 cctaggtccgtgaatgttgtgtttacgatgattgattttgccatccaaaaa 55933653  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 196
Target Start/End: Complemental strand, 16955424 - 16955391
Alignment:
Q  163 cctaggtccatgaatgttgtgtttacgaggattg 196  Q
    |||||| |||||||||||||||||||||||||||    
T  16955424 cctaggcccatgaatgttgtgtttacgaggattg 16955391  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 221
Target Start/End: Original strand, 50464448 - 50464497
Alignment:
Q  172 atgaatgttgtgtttacgaggattgtttttcccgtccaaaaaggcctagc 221  Q
    ||||||||||||||||||||||||  |||| || ||||||||| ||||||    
T  50464448 atgaatgttgtgtttacgaggatttattttgccatccaaaaagacctagc 50464497  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 196
Target Start/End: Original strand, 18981682 - 18981714
Alignment:
Q  164 ctaggtccatgaatgttgtgtttacgaggattg 196  Q
    ||||||||||||||||||||||||||| |||||    
T  18981682 ctaggtccatgaatgttgtgtttacgatgattg 18981714  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 215
Target Start/End: Original strand, 50442622 - 50442674
Alignment:
Q  163 cctaggtccatgaatgttgtgtttacgaggattgtttttcccgtccaaaaagg 215  Q
    ||||||| |||| |||||||||||| |||||||| |||| || ||||||||||    
T  50442622 cctaggttcatggatgttgtgtttaagaggattggttttgccatccaaaaagg 50442674  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 163 - 219
Target Start/End: Complemental strand, 13413315 - 13413259
Alignment:
Q  163 cctaggtccatgaatgttgtgtttacgaggattgtttttcccgtccaaaaaggccta 219  Q
    ||||||||||||||||||||||||| ||| |||| |||| || ||||||||||||||    
T  13413315 cctaggtccatgaatgttgtgtttatgagaattggttttgccatccaaaaaggccta 13413259  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 163 - 215
Target Start/End: Complemental strand, 17344602 - 17344550
Alignment:
Q  163 cctaggtccatgaatgttgtgtttacgaggattgtttttcccgtccaaaaagg 215  Q
    |||||||||||||||||||||||||||||||||| |||| |  ||||||||||    
T  17344602 cctaggtccatgaatgttgtgtttacgaggattgatttttcgatccaaaaagg 17344550  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 221
Target Start/End: Original strand, 4413209 - 4413267
Alignment:
Q  163 cctaggtccatgaatgttgtgtttacgaggattgtttttcccgtccaaaaaggcctagc 221  Q
    ||||||||||||||||||||||| | |||||||| |||| || |||||||||| |||||    
T  4413209 cctaggtccatgaatgttgtgttcatgaggattgattttgccatccaaaaaggtctagc 4413267  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 221
Target Start/End: Original strand, 9685558 - 9685616
Alignment:
Q  163 cctaggtccatgaatgttgtgtttacgaggattgtttttcccgtccaaaaaggcctagc 221  Q
    ||||||||||||||||||||||| || | |||||||||| || |||||||||| |||||    
T  9685558 cctaggtccatgaatgttgtgttcacaaagattgtttttgccatccaaaaaggtctagc 9685616  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 278
Target Start/End: Complemental strand, 30602430 - 30602338
Alignment:
Q  186 tacgaggattgtttttcccgtccaaaaaggcctagctacactgctttttacctgcttgccttccgttcatgtgtaattagtcattgatatata 278  Q
    ||||||||||| |||| || ||||||||||||||||  | | |||| || || || |||||||  |||||||||||||| || ||||||||||    
T  30602430 tacgaggattggttttgccatccaaaaaggcctagcagcgcagcttgttgcccgcatgccttctattcatgtgtaattaatccttgatatata 30602338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 166 - 201
Target Start/End: Original strand, 41868054 - 41868089
Alignment:
Q  166 aggtccatgaatgttgtgtttacgaggattgttttt 201  Q
    ||||||||||||||||||||||||||||||| ||||    
T  41868054 aggtccatgaatgttgtgtttacgaggattggtttt 41868089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 221
Target Start/End: Original strand, 18745097 - 18745155
Alignment:
Q  163 cctaggtccatgaatgttgtgtttacgaggattgtttttcccgtccaaaaaggcctagc 221  Q
    |||||||| ||||||||||||||||  ||||||| |||| || |||||||||| |||||    
T  18745097 cctaggtctatgaatgttgtgtttataaggattggttttgccatccaaaaaggtctagc 18745155  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 195
Target Start/End: Complemental strand, 44686380 - 44686348
Alignment:
Q  163 cctaggtccatgaatgttgtgtttacgaggatt 195  Q
    ||||||||| |||||||||||||||||||||||    
T  44686380 cctaggtccgtgaatgttgtgtttacgaggatt 44686348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 216
Target Start/End: Complemental strand, 33214 - 33161
Alignment:
Q  163 cctaggtccatgaatgttgtgtttacgaggattgtttttcccgtccaaaaaggc 216  Q
    |||||||||||||| || |||||||||||||||| ||||  | |||||||||||    
T  33214 cctaggtccatgaacgtcgtgtttacgaggattgattttgtcatccaaaaaggc 33161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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