View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13663_low_1 (Length: 535)

Name: NF13663_low_1
Description: NF13663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13663_low_1
NF13663_low_1
[»] chr3 (4 HSPs)
chr3 (196-514)||(33715336-33715654)
chr3 (21-131)||(33715720-33715830)
chr3 (412-514)||(33709467-33709569)
chr3 (300-391)||(37582710-37582803)
[»] chr5 (4 HSPs)
chr5 (21-137)||(28697217-28697333)
chr5 (199-297)||(28697057-28697154)
chr5 (199-296)||(28699325-28699421)
chr5 (31-137)||(28699484-28699590)
[»] chr7 (3 HSPs)
chr7 (200-298)||(628451-628548)
chr7 (21-137)||(628269-628387)
chr7 (215-296)||(626171-626251)
[»] chr2 (2 HSPs)
chr2 (31-137)||(28180305-28180411)
chr2 (199-293)||(28180474-28180567)
[»] chr6 (2 HSPs)
chr6 (199-296)||(27712205-27712301)
chr6 (21-137)||(27712026-27712142)
[»] chr4 (2 HSPs)
chr4 (30-137)||(6677864-6677971)
chr4 (199-296)||(6677705-6677801)


Alignment Details
Target: chr3 (Bit Score: 311; Significance: 1e-175; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 196 - 514
Target Start/End: Complemental strand, 33715654 - 33715336
Alignment:
Q  196 ctctatgtataaatatgatggttatcattcaataaaaatatcccttttatgctgttcacataacatattcttttccacgttaaacctttctatatccaac 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  33715654 ctctatgtataaatatgatggttatcattcaataaaaatatcccttttatgctgttcacataacatattcttttccacgttaaacctttctataaccaac 33715555  T
Q  296 aaattatttaatctgaaaaataaaatagtaaaactattcaaatagtgaaaagagcataataccaatattgtcattataaaatcaatgacttgatgtgcaa 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33715554 aaattatttaatctgaaaaataaaatagtaaaactattcaaatagtgaaaagagcataataccaatattgtcattataaaatcaatgacttgatgtgcaa 33715455  T
Q  396 gttattacacaatatggaatcatctacctgcaaaatacaatgaacacccaacaatttagcaggtcaaagcaaatgttcacattctatgtaataaaataag 495  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33715454 gttattacacaatatggaatcatctacctgcaaaatacaatgaacacccaacaatttagcaggtcaaagcaaatgttcacattctatgtaataaaataag 33715355  T
Q  496 tatttttatgaactttact 514  Q
    || ||||||||||||||||    
T  33715354 tacttttatgaactttact 33715336  T

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Target: chr3; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 21 - 131
Target Start/End: Complemental strand, 33715830 - 33715720
Alignment:
Q  21 caaggaggagtgttgactggatgactatgaaactactgttttaagttcctaatttttaggatctattatctttttatgttattgttgagaactccatgat 120  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||   |||||  ||||    
T  33715830 caaggaggagtgttgactagatgactatgaaactactgttttaagttcctaatttgtaggatctattatctttttatgttattgttagaaactctctgat 33715731  T
Q  121 atgctctattt 131  Q
    |||||||||||    
T  33715730 atgctctattt 33715720  T

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Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 412 - 514
Target Start/End: Complemental strand, 33709569 - 33709467
Alignment:
Q  412 gaatcatctacctgcaaaatacaatgaacacccaacaatttagcaggtcaaagcaaatgttcacattctatgtaataaaataagtatttttatgaacttt 511  Q
    |||||||| || || |||||||||||||||| | ||||||||||| ||||||   |||||||||||| ||||||||||||| |||||||||||||||| |    
T  33709569 gaatcatccacgtgaaaaatacaatgaacactcgacaatttagcacgtcaaaaggaatgttcacattttatgtaataaaatcagtatttttatgaactct 33709470  T
Q  512 act 514  Q
    |||    
T  33709469 act 33709467  T

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Target: chr3; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 300 - 391
Target Start/End: Complemental strand, 37582803 - 37582710
Alignment:
Q  300 tatttaatctgaaaaataaaatagtaaaa-ctattcaaatagtgaaaagagcataatacc-aatattgtcattataaaatcaatgacttgatgt 391  Q
    |||||||||||||||||||||||| |||| || ||||||||||||||||||||| | ||| ||||||| ||||||||| |||||||||||||||    
T  37582803 tatttaatctgaaaaataaaataggaaaagctcttcaaatagtgaaaagagcatgacacccaatattggcattataaagtcaatgacttgatgt 37582710  T

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Target: chr5 (Bit Score: 101; Significance: 8e-50; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 21 - 137
Target Start/End: Complemental strand, 28697333 - 28697217
Alignment:
Q  21 caaggaggagtgttgactggatgactatgaaactactgttttaagttcctaatttttaggatctattatctttttatgttattgttgagaactccatgat 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||  ||||    
T  28697333 caaggaggagtgttgactggatgactatgaaactactgttttaagttcctaatttttaggatctattatctttttatgttattgttaggaactctctgat 28697234  T
Q  121 atgctctatttgttacc 137  Q
    |||||||||||||||||    
T  28697233 atgctctatttgttacc 28697217  T

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Target: chr5; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 199 - 297
Target Start/End: Complemental strand, 28697154 - 28697057
Alignment:
Q  199 tatgtataaatatgatggttatcattcaataaaaatatcccttttatgctgttcacataacatattcttttccacgttaaacctttctatatccaacaa 297  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  28697154 tatgtataaatatgatggttatcattcaataaaaatattccttttatgctgttcacataacatatt-ttttccacgttaaacctttctatatccaacaa 28697057  T

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Target: chr5; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 199 - 296
Target Start/End: Complemental strand, 28699421 - 28699325
Alignment:
Q  199 tatgtataaatatgatggttatcattcaataaaaatatcccttttatgctgttcacataacatattcttttccacgttaaacctttctatatccaaca 296  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  28699421 tatgtataaatatgatggttatcattcaataaaaatattccttttatgttgttcacataacatatt-ttttccacgttaaacctttctatatccaaca 28699325  T

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Target: chr5; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 31 - 137
Target Start/End: Complemental strand, 28699590 - 28699484
Alignment:
Q  31 tgttgactggatgactatgaaactactgttttaagttcctaatttttaggatctattatctttttatgttattgttgagaactccatgatatgctctatt 130  Q
    ||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||  ||||||  ||||||||||||||    
T  28699590 tgttgactggatgactatgaaaccactattttaagttcctaatctttaggatctattatctttttatgttattgttaggaactctctgatatgctctatt 28699491  T
Q  131 tgttacc 137  Q
    |||||||    
T  28699490 tgttacc 28699484  T

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Target: chr7 (Bit Score: 87; Significance: 2e-41; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 200 - 298
Target Start/End: Original strand, 628451 - 628548
Alignment:
Q  200 atgtataaatatgatggttatcattcaataaaaatatcccttttatgctgttcacataacatattcttttccacgttaaacctttctatatccaacaaa 298  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  628451 atgtataaatatgatggttatcattcaataaaaaaatcccttttatgctgttcacataacatatt-ttttccacgttaaacctttctatatccaacaaa 628548  T

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Target: chr7; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 21 - 137
Target Start/End: Original strand, 628269 - 628387
Alignment:
Q  21 caaggaggagtgttgactggatgactatgaaactactgttttaagttcctaatttttaggatct-attatc-tttttatgttattgttgagaactccatg 118  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||| ||||||||||||||||  ||||||  ||    
T  628269 caaggaggagtgttgactggatgactatgaaactacggttttaagttcctaatttttaggatctaagtatcttttttatgttattgttaggaactctctg 628368  T
Q  119 atatgctctatttgttacc 137  Q
    |||||||||||||||||||    
T  628369 atatgctctatttgttacc 628387  T

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Target: chr7; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 215 - 296
Target Start/End: Original strand, 626171 - 626251
Alignment:
Q  215 ggttatcattcaataaaaatatcccttttatgctgttcacataacatattcttttccacgttaaacctttctatatccaaca 296  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  626171 ggttatcattcaataaaaaaatcccttttatgctgttcacataacatatt-ttttccacgttaaatctttctatatccaaca 626251  T

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Target: chr2 (Bit Score: 87; Significance: 2e-41; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 31 - 137
Target Start/End: Original strand, 28180305 - 28180411
Alignment:
Q  31 tgttgactggatgactatgaaactactgttttaagttcctaatttttaggatctattatctttttatgttattgttgagaactccatgatatgctctatt 130  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  ||||||  ||||||||||||||    
T  28180305 tgttgactggatgactatgaaactactgatttaagttcctaatttttaggatctattatctttttatgttattgttaggaactctctgatatgctctatt 28180404  T
Q  131 tgttacc 137  Q
    |||||||    
T  28180405 tgttacc 28180411  T

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Target: chr2; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 199 - 293
Target Start/End: Original strand, 28180474 - 28180567
Alignment:
Q  199 tatgtataaatatgatggttatcattcaataaaaatatcccttttatgctgttcacataacatattcttttccacgttaaacctttctatatcca 293  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||    
T  28180474 tatgtataaatatgatggttatcattcaataaaattatcccttttatgctgttcacataacatatt-ttttccatgttaaacctttctatatcca 28180567  T

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Target: chr6 (Bit Score: 86; Significance: 7e-41; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 199 - 296
Target Start/End: Original strand, 27712205 - 27712301
Alignment:
Q  199 tatgtataaatatgatggttatcattcaataaaaatatcccttttatgctgttcacataacatattcttttccacgttaaacctttctatatccaaca 296  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  27712205 tatgtataaatatgatggttatcattcaataaaaatattccttttatgctgttcacataacatatt-ttttccacgttaaacctttctatatccaaca 27712301  T

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Target: chr6; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 21 - 137
Target Start/End: Original strand, 27712026 - 27712142
Alignment:
Q  21 caaggaggagtgttgactggatgactatgaaactactgttttaagttcctaatttttaggatctattatctttttatgttattgttgagaactccatgat 120  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||  | ||||  ||||    
T  27712026 caaggaggagtgtagactggatgactatgaaactactgttttaagttcctaaattttaggatctattatctttttatgttattattaggcactctctgat 27712125  T
Q  121 atgctctatttgttacc 137  Q
    |||||||||||||||||    
T  27712126 atgctctatttgttacc 27712142  T

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Target: chr4 (Bit Score: 84; Significance: 1e-39; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 30 - 137
Target Start/End: Complemental strand, 6677971 - 6677864
Alignment:
Q  30 gtgttgactggatgactatgaaactactgttttaagttcctaatttttaggatctattatctttttatgttattgttgagaactccatgatatgctctat 129  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||  |||||||||||||    
T  6677971 gtgttgactggatgagtatggaactactgttttaagttcctaatttttaggatctattatctttttatgttattgttaggaactctctgatatgctctat 6677872  T
Q  130 ttgttacc 137  Q
    ||||||||    
T  6677871 ttgttacc 6677864  T

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Target: chr4; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 199 - 296
Target Start/End: Complemental strand, 6677801 - 6677705
Alignment:
Q  199 tatgtataaatatgatggttatcattcaataaaaatatcccttttatgctgttcacataacatattcttttccacgttaaacctttctatatccaaca 296  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  6677801 tatgtataaatatgatggttatcattcaataaaaacatcccttttatgctgttcacataacatatt-ttttccactttaaacctttctatatccaaca 6677705  T

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