View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13664_low_2 (Length: 474)

Name: NF13664_low_2
Description: NF13664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13664_low_2
NF13664_low_2
[»] chr3 (4 HSPs)
chr3 (3-169)||(43536336-43536502)
chr3 (234-295)||(43536210-43536271)
chr3 (401-456)||(43536045-43536100)
chr3 (122-165)||(54361719-54361762)
[»] chr5 (1 HSPs)
chr5 (124-160)||(42111612-42111648)
[»] chr7 (1 HSPs)
chr7 (15-62)||(18798460-18798507)
[»] chr1 (2 HSPs)
chr1 (122-165)||(47587443-47587486)
chr1 (124-165)||(9661765-9661806)
[»] chr2 (2 HSPs)
chr2 (125-163)||(29181282-29181320)
chr2 (124-165)||(37991939-37991980)
[»] chr8 (1 HSPs)
chr8 (124-165)||(557835-557876)
[»] scaffold0111 (1 HSPs)
scaffold0111 (15-51)||(40810-40846)


Alignment Details
Target: chr3 (Bit Score: 134; Significance: 1e-69; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 3 - 169
Target Start/End: Complemental strand, 43536502 - 43536336
Alignment:
Q  3 caacatatttaataaatatgtttatagttcctctaaatataccaactttaagttttagtcgctnnnnnnnttccttaaatttttggtcttctaaatttta 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||       ||||||||||||||||||||||||||||||    
T  43536502 caacatatttaataaatatgtttatagttcctctaaatataccaactttaagttttagtccctaaaaaaattccttaaatttttggtcttctaaatttta 43536403  T
Q  103 tgacatatagctgatacggccttaaaatagcattagtttaataatttaactatttaatctttagtat 169  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  43536402 tgacatatagctgatacagccttaaaatagcattagtttaataatttaactgtttaatctttagtat 43536336  T

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Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 234 - 295
Target Start/End: Complemental strand, 43536271 - 43536210
Alignment:
Q  234 actaatgatattttatggtcttaaatttaaagaagttgcttggaacaaacgtaaacgttggt 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  43536271 actaatgatattttatggtcttaaatttaaagaagttgcttggaacaaacgtaaacattggt 43536210  T

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Target: chr3; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 401 - 456
Target Start/End: Complemental strand, 43536100 - 43536045
Alignment:
Q  401 gtgatatatttagagggaaaacatatttaaccctttaatttttaaggggttattaa 456  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43536100 gtgatatatttagagggaaaacatatttaaccctttaatttttaaggggttattaa 43536045  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 122 - 165
Target Start/End: Original strand, 54361719 - 54361762
Alignment:
Q  122 ccttaaaatagcattagtttaataatttaactatttaatcttta 165  Q
    |||||||||| ||||||||||||||| |||||||||||||||||    
T  54361719 ccttaaaatatcattagtttaataatctaactatttaatcttta 54361762  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 124 - 160
Target Start/End: Original strand, 42111612 - 42111648
Alignment:
Q  124 ttaaaatagcattagtttaataatttaactatttaat 160  Q
    |||||||| ||||||||||||||||||||||||||||    
T  42111612 ttaaaatatcattagtttaataatttaactatttaat 42111648  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 62
Target Start/End: Complemental strand, 18798507 - 18798460
Alignment:
Q  15 taaatatgtttatagttcctctaaatataccaactttaagttttagtc 62  Q
    ||||||||||| |||||||| ||||||||||||||||  |||||||||    
T  18798507 taaatatgtttttagttcctataaatataccaactttttgttttagtc 18798460  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 122 - 165
Target Start/End: Complemental strand, 47587486 - 47587443
Alignment:
Q  122 ccttaaaatagcattagtttaataatttaactatttaatcttta 165  Q
    |||||||||| ||||||||||||||||||| |||||||| ||||    
T  47587486 ccttaaaatatcattagtttaataatttaaatatttaatattta 47587443  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 165
Target Start/End: Original strand, 9661765 - 9661806
Alignment:
Q  124 ttaaaatagcattagtttaataatttaactatttaatcttta 165  Q
    |||||||| |||||  ||||||||||||||||||||||||||    
T  9661765 ttaaaatatcattaacttaataatttaactatttaatcttta 9661806  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 125 - 163
Target Start/End: Complemental strand, 29181320 - 29181282
Alignment:
Q  125 taaaatagcattagtttaataatttaactatttaatctt 163  Q
    ||||||| |||||||||||||||||||||||| ||||||    
T  29181320 taaaatatcattagtttaataatttaactattaaatctt 29181282  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 165
Target Start/End: Complemental strand, 37991980 - 37991939
Alignment:
Q  124 ttaaaatagcattagtttaataatttaactatttaatcttta 165  Q
    ||||||||  |||||||||||||||||||||||| |||||||    
T  37991980 ttaaaatactattagtttaataatttaactatttcatcttta 37991939  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 165
Target Start/End: Original strand, 557835 - 557876
Alignment:
Q  124 ttaaaatagcattagtttaataatttaactatttaatcttta 165  Q
    ||||||||  |||||||||||| |||||||||||||||||||    
T  557835 ttaaaatattattagtttaatagtttaactatttaatcttta 557876  T

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Target: scaffold0111 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 15 - 51
Target Start/End: Complemental strand, 40846 - 40810
Alignment:
Q  15 taaatatgtttatagttcctctaaatataccaacttt 51  Q
    ||||||||||| |||||||| ||||||||||||||||    
T  40846 taaatatgtttttagttcctataaatataccaacttt 40810  T

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