View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13664_low_3 (Length: 468)
Name: NF13664_low_3
Description: NF13664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13664_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 308; Significance: 1e-173; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 13 - 403
Target Start/End: Original strand, 13871488 - 13871876
Alignment:
| Q |
13 |
atcatcaaatgttactcttcccatagatagagattaatagtttgtttgttttacatcctacggctatactgacaagagtttgtggcaagccaannnnnnn |
112 |
Q |
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| T |
13871488 |
atcatcaaatgttactcttcccatagataga--ttaatagtttgtttgttttacatcctacggctataccgacaagagtttgtggcaagccaattttttt |
13871585 |
T |
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| Q |
113 |
cgatgaagtccaatggtgccttgtacacaattagcgaaaattaatctaattggctcttaaacttgtgaagtctatcatatgaaaagaaatggtcttgaa- |
211 |
Q |
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| T |
13871586 |
ggatgaagtccaatggtgccttgtacacaattagcgaaaattaatctaattggctcttaaacttgtgaagtctatcatatggaaagaa-tggacttggac |
13871684 |
T |
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| Q |
212 |
ttggattggatgtgtttagtaacttcatttagtcattgcagccaccaatttcatcaccattgaaatgatttcccatatatcctccaccattgatatactt |
311 |
Q |
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| T |
13871685 |
ttggattggatgtgtttagtaacttcatgtagtcattgcagccaccaatttcatcaccattgaaatgatttcccacatatcctacaccattgatatactt |
13871784 |
T |
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| Q |
312 |
tgtccaaatgtgtcctctatgtattagatatacataaaaccagaaagagataaaatagaaataattactatccctattatttgatctatgta |
403 |
Q |
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| T |
13871785 |
tttccaaatgtgtcctctatgtattagatatacataaaaccagaaagagataaaatagaaataattactatccctattatttgatctatgta |
13871876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 131 - 372
Target Start/End: Original strand, 13877965 - 13878203
Alignment:
| Q |
131 |
ccttgtacacaattagcgaaaattaatctaattggctcttaaacttgtgaagtctatcatatgaaaagaaatggtcttgaattggattggatgtgtttag |
230 |
Q |
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| T |
13877965 |
ccttgaacaaaattagggaaaattaatcgaa--ggctcttaaacttgtgaagtctataatatgaaaagaa-tggacttggattggattggatgtggtctg |
13878061 |
T |
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| Q |
231 |
taacttcatttagtcattgcagccaccaatttcatcaccattgaaatgatttcccatatatcctccaccattgatatactttgtccaaatgtgtcctcta |
330 |
Q |
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| T |
13878062 |
taacttcatgaagtcattgcagccaccaatttcatcaccattgaattgatttcccacatatcctccaccattgatctactttgtccaaatgtgtactcta |
13878161 |
T |
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| Q |
331 |
tgtattagatatacataaaaccagaaagagataaaatagaaa |
372 |
Q |
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| T |
13878162 |
tgaattacatatacataaaaccagaaagagataaaatagaaa |
13878203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 120 - 364
Target Start/End: Original strand, 13874148 - 13874376
Alignment:
| Q |
120 |
gtccaatggtgccttgtacacaattagcgaaaattaatctaattggctcttaaacttgtgaagtctatcatatgaaaagaaatggtcttgaattggattg |
219 |
Q |
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| T |
13874148 |
gtccaattgtgccttgaacaaaattagcgaaaattaatctaagta--tcttaaacttgtgtagtctatcatatgaaaagaaacggacttt-----gattg |
13874240 |
T |
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| Q |
220 |
gatgtgtttagtaacttcatttagtcattgcagccaccaatttcatcaccattgaaatgatttcccatatatcctccaccattgatatactttgtccaaa |
319 |
Q |
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| T |
13874241 |
gatgtggtcagtaacttcatgcagtcactgcagccaccaatttcatcgtcattgaattgatttcccatatatcatccaccattgatatactttgtccaaa |
13874340 |
T |
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| Q |
320 |
tgtgtcctctatgtattagatatacataaaaccagaaagagataa |
364 |
Q |
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| T |
13874341 |
--tgtactctat-------atatacataaaaccagaaagagataa |
13874376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 248 - 322
Target Start/End: Original strand, 13880771 - 13880845
Alignment:
| Q |
248 |
tgcagccaccaatttcatcaccattgaaatgatttcccatatatcctccaccattgatatactttgtccaaatgt |
322 |
Q |
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| T |
13880771 |
tgcagctaccaatttcataaacattgaattgatttttcacaaatcctccaccattgatctactttgtcccaatgt |
13880845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 405 - 451
Target Start/End: Original strand, 13878219 - 13878265
Alignment:
| Q |
405 |
acacaattcaaatccctcacgattaaacttaaattttctgatctaag |
451 |
Q |
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| T |
13878219 |
acacagttcaaatccctcaaaattaaacttaaattttctgatataag |
13878265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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