View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13664_low_4 (Length: 438)
Name: NF13664_low_4
Description: NF13664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13664_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 11 - 398
Target Start/End: Original strand, 12388247 - 12388634
Alignment:
| Q |
11 |
atgagaagaagggatttgtgttgaattctcaacaagaaaatcaaaaacctctttccaatcccttatattcttagtatgttcagcatcatgatatcccatt |
110 |
Q |
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| T |
12388247 |
atgagaagaagggatttgtggggaattctcaacaagaaaatcaaaaacctctttccaatcccttatattcttagtatgttcagcatcatgatatcccatt |
12388346 |
T |
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| Q |
111 |
gcattaactgcatctcttttcactttcttcttctcctcaatgctttgttcaaaaaacttcttggcctcaatctcaacctttgtgctaacatcagatggaa |
210 |
Q |
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| T |
12388347 |
gcattaactgcatctcttttcactttcttcttctcctcaatgctttgctcaaaaaactttttggcctcaatctcaacctttgtactaacatcagatggaa |
12388446 |
T |
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| Q |
211 |
ctccatgattgattacttgaaaaaatccccattcttcacatgccttgccaatctttgagatgaggttttcttgactactttctgagaggtcaatgattgg |
310 |
Q |
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| T |
12388447 |
ctccatgattgattacttgaaaaaatccccattcttcacatgccttgccaatctttgagatgaggttttgttgactactttctgagaggtcaatgattgg |
12388546 |
T |
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| Q |
311 |
aatttcatcaacttgtacaaaggtagataacttaggacggtgttctgtggcttgtatgaaagatggatctatgtctcccatgttttga |
398 |
Q |
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| T |
12388547 |
aatttcatcaacttgtacaaaggtagataacttaggacggtgttctgtggcttgtatgaaagatgaatctatgtctcccatgttttga |
12388634 |
T |
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