View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13665_high_7 (Length: 243)
Name: NF13665_high_7
Description: NF13665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13665_high_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 9 - 224
Target Start/End: Original strand, 25972171 - 25972386
Alignment:
| Q |
9 |
atgaaagaaatggaaggcggtatggcagcagaccaaattgcttccgcccaaggcagcagaatagcactcgggcacagaaacgaataggcttgctttgacg |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
25972171 |
atgaaagaaatggaaggcggtatggcagcagaccaaattacttccgccgaaggcagcagaatagcacgcaggcacagaaacgaataggcttgctttgacg |
25972270 |
T |
|
| Q |
109 |
aaagaattccattcgaaacatgcctccaaaccaaaacatccggcagctggctgtttggtaaaacaatgctatctaatctgagttggatgtcaccactagc |
208 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
25972271 |
aaagaattccattcgaagcatgcctccaaaccaaaacatccggcagctggctgtttggtaaaacgatgctatctaatctgagttggatgtcaccactagc |
25972370 |
T |
|
| Q |
209 |
agcgataggtgcaggc |
224 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
25972371 |
agcgataggtgcaggc |
25972386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 90 - 211
Target Start/End: Complemental strand, 20425278 - 20425157
Alignment:
| Q |
90 |
gaataggcttgctttgacgaaagaattccattcgaaacatgcctccaaaccaaaacatccggcagctggctgtttggtaaaacaatgctatctaatctga |
189 |
Q |
| |
|
||||| || ||||||||||||||| |||||| |||| |||||||||||| || |||||||||||||||||||| ||||| ||||||| ||||| |||| |
|
|
| T |
20425278 |
gaataagcgtgctttgacgaaagagttccatccgaagaatgcctccaaacaaacacatccggcagctggctgttcggtaatacaatgccatctattctgc |
20425179 |
T |
|
| Q |
190 |
gttggatgtcaccactagcagc |
211 |
Q |
| |
|
||| ||||| |||||||||| |
|
|
| T |
20425178 |
tttgaatgtctacactagcagc |
20425157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 7 - 224
Target Start/End: Original strand, 20937970 - 20938187
Alignment:
| Q |
7 |
agatgaaagaaatggaaggcggtatggcagcagaccaaattgcttccgcccaaggcagcagaatagcactcgggcacagaaacgaataggcttgctttga |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
20937970 |
agatgaaagaaatggaaggcggtatggcagcagaccaaattacttccgcccaaggcagcagactagcacgcgggcacagaaacgaataggcttgctttga |
20938069 |
T |
|
| Q |
107 |
cgaaagaattccattcgaaacatgcctccaaaccaaaacatccggcagctggctgtttggtaaaacaatgctatctaatctgagttggatgtcaccacta |
206 |
Q |
| |
|
|||||||| ||||| |||| |||||||||||||||||||||||| |||||||||| |||| | ||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
20938070 |
cgaaagaactccatccgaagcatgcctccaaaccaaaacatccgtcagctggctgcttggaagaacgatgctatctaatctgagttggatgtcaccacta |
20938169 |
T |
|
| Q |
207 |
gcagcgataggtgcaggc |
224 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
20938170 |
gcagcgataggtgcaggc |
20938187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 12 - 211
Target Start/End: Original strand, 10609482 - 10609681
Alignment:
| Q |
12 |
aaagaaatggaaggcggtatggcagcagaccaaattgcttccgcccaaggcagcagaatagcactcgggcacagaaacgaataggcttgctttgacgaaa |
111 |
Q |
| |
|
|||||| |||||||||| |||||||| | ||||||||| ||||||||||||| || | | || ||| ||||||||||||| || || ||||||||||||| |
|
|
| T |
10609482 |
aaagaagtggaaggcgggatggcagcggtccaaattgcatccgcccaaggcaacatagtggctctcaggcacagaaacgagtaagcgtgctttgacgaaa |
10609581 |
T |
|
| Q |
112 |
gaattccattcgaaacatgcctccaaaccaaaacatccggcagctggctgtttggtaaaacaatgctatctaatctgagttggatgtcaccactagcagc |
211 |
Q |
| |
|
||||||||| |||| ||||||||||||||| |||||| ||||||||||||| ||||| ||||||||||||| |||| ||| ||||| ||||||||||| |
|
|
| T |
10609582 |
gaattccatccgaagaatgcctccaaaccaacacatccagcagctggctgttcggtaatacaatgctatctattctgttttgaatgtctccactagcagc |
10609681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 12 - 211
Target Start/End: Original strand, 20375067 - 20375266
Alignment:
| Q |
12 |
aaagaaatggaaggcggtatggcagcagaccaaattgcttccgcccaaggcagcagaatagcactcgggcacagaaacgaataggcttgctttgacgaaa |
111 |
Q |
| |
|
|||||| |||||||||| || ||||| ||||||||| ||||||||||||| ||| | || |||||||||||||| | || || ||||||||||||| |
|
|
| T |
20375067 |
aaagaagtggaaggcgggatagcagcgctccaaattgcatccgcccaaggcattagagtggctatcgggcacagaaacaagtaagcgtgctttgacgaaa |
20375166 |
T |
|
| Q |
112 |
gaattccattcgaaacatgcctccaaaccaaaacatccggcagctggctgtttggtaaaacaatgctatctaatctgagttggatgtcaccactagcagc |
211 |
Q |
| |
|
||||||||| |||| ||||||||||||||| |||||||||||||||| || ||||| ||||||||||||| | || ||| ||||| ||||||||||| |
|
|
| T |
20375167 |
gaattccatccgaagaatgcctccaaaccaacgcatccggcagctggctattcggtaatacaatgctatctattttgttttgaatgtctccactagcagc |
20375266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 22523959 - 22523999
Alignment:
| Q |
7 |
agatgaaagaaatggaaggcggtatggcagcagaccaaatt |
47 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22523959 |
agatgaaagaaatggaaggcggtatggcagcagaccaaatt |
22523999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University