View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13665_low_2 (Length: 545)
Name: NF13665_low_2
Description: NF13665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13665_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 247 - 527
Target Start/End: Original strand, 48431263 - 48431543
Alignment:
| Q |
247 |
aaatttaatactcaaattcatgcccacacattccttcttgtcataacctgatgcatgatgaaaagttgtgttcttgttcttatccaaagaatccactttt |
346 |
Q |
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| T |
48431263 |
aaatttgatactcaaattcatgcccacacattccttcttgtcataacctgatgcatgatgaaaagttgtgttcttgtacttatccaaagaatccactttt |
48431362 |
T |
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| Q |
347 |
gctccagactcaaggagaaattgtgtatacttaacctggaataacatcacgagcaacttttaatccatacattacaagaacaaaactagattcataaaat |
446 |
Q |
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| T |
48431363 |
gctccagactcaaggagaaattgtgtatacttaacctggaataacatcacgagcaacttttaatccatacattacaagaacaaaactagattcataaaat |
48431462 |
T |
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| Q |
447 |
tataactctttgagctttatttctcttcttgcgtgccctgcctagcttgaaggaagagagggctggatggagctagaacgt |
527 |
Q |
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| T |
48431463 |
tataactctttgagctttatttctcttcttgcgtgccctgcctagcttgaaggaagagagggctggatggagctagaacgt |
48431543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 8 - 91
Target Start/End: Original strand, 48431072 - 48431155
Alignment:
| Q |
8 |
ccaagaatatggaagaggcttctggggcacacctctaaagagaaggtcaactagatggagtttaagtatgaccagagaaagctc |
91 |
Q |
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| T |
48431072 |
ccaataataaggaagaggcttcgggggcacacctctaaagagaaggtcaactagatggagtttaagtatgaccaaagaaagctc |
48431155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 130 - 197
Target Start/End: Original strand, 48431199 - 48431266
Alignment:
| Q |
130 |
gggaatgaaagcacaaatcagtgtaggactacatgacattaatatactaaaataacaatgaatgaaat |
197 |
Q |
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| T |
48431199 |
gggaatgaaagcacaaatcagtgtaggacgacatgacattaatatactaaaataacaatgaatgaaat |
48431266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 270 - 418
Target Start/End: Complemental strand, 1925606 - 1925459
Alignment:
| Q |
270 |
ccacacattccttcttgtcataacctgatgcatgatgaaaagttgtgttcttgttcttatccaaagaatccacttttgctccagactcaaggagaaattg |
369 |
Q |
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|||||||||| ||| || ||||||||| ||||| ||||| || ||||||||||||||||||||||| ||| ||||||||||||| |||||||||| ||| |
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| T |
1925606 |
ccacacattctttcctgccataacctgctgcataatgaagagctgtgttcttgttcttatccaaagcatctacttttgctccagcctcaaggagagcttg |
1925507 |
T |
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| Q |
370 |
tgtatacttaacctggaataacatcacgagcaacttttaatccatacat |
418 |
Q |
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| T |
1925506 |
cgcacacttcacctggaat-atatcaggagcatattttaatccatacat |
1925459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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