View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13665_low_4 (Length: 391)

Name: NF13665_low_4
Description: NF13665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13665_low_4
NF13665_low_4
[»] chr8 (14 HSPs)
chr8 (15-197)||(4442595-4442786)
chr8 (102-244)||(4444444-4444584)
chr8 (246-347)||(18203299-18203391)
chr8 (245-298)||(10536000-10536053)
chr8 (246-366)||(32539409-32539520)
chr8 (101-203)||(29584814-29584915)
chr8 (245-298)||(10536810-10536863)
chr8 (247-334)||(30905982-30906060)
chr8 (101-204)||(4426594-4426699)
chr8 (240-300)||(5881822-5881882)
chr8 (244-300)||(9237759-9237815)
chr8 (246-292)||(30905397-30905443)
chr8 (243-300)||(12823618-12823675)
chr8 (259-300)||(14054953-14054994)
[»] chr4 (25 HSPs)
chr4 (244-383)||(9268022-9268152)
chr4 (243-391)||(49028462-49028601)
chr4 (244-391)||(3990874-3991012)
chr4 (242-391)||(10468679-10468819)
chr4 (247-391)||(12585357-12585492)
chr4 (246-374)||(45667232-45667351)
chr4 (246-367)||(52677553-52677665)
chr4 (308-391)||(16067378-16067461)
chr4 (245-367)||(9450881-9450994)
chr4 (306-367)||(622109-622170)
chr4 (245-376)||(17931288-17931410)
chr4 (240-374)||(4437675-4437800)
chr4 (244-298)||(17932158-17932212)
chr4 (308-366)||(21038168-21038226)
chr4 (245-298)||(10286410-10286463)
chr4 (245-296)||(28451561-28451612)
chr4 (248-346)||(25225793-25225882)
chr4 (245-298)||(28450750-28450803)
chr4 (307-374)||(4438989-4439056)
chr4 (245-296)||(9449715-9449766)
chr4 (244-298)||(12315854-12315908)
chr4 (244-292)||(10468479-10468527)
chr4 (247-292)||(622346-622391)
chr4 (244-285)||(45667365-45667406)
chr4 (249-298)||(49028267-49028316)
[»] chr3 (28 HSPs)
chr3 (245-391)||(24107151-24107288)
chr3 (245-391)||(27864799-27864936)
chr3 (248-367)||(54446238-54446349)
chr3 (244-391)||(38758807-38758944)
chr3 (245-390)||(14812427-14812563)
chr3 (245-298)||(31596770-31596823)
chr3 (245-298)||(46685548-46685601)
chr3 (245-391)||(3171688-3171822)
chr3 (244-294)||(11422378-11422428)
chr3 (244-298)||(18025879-18025933)
chr3 (245-298)||(16907930-16907983)
chr3 (310-391)||(19860689-19860770)
chr3 (245-334)||(27865054-27865134)
chr3 (245-374)||(46684098-46684218)
chr3 (245-298)||(3171489-3171542)
chr3 (245-334)||(19860491-19860571)
chr3 (309-363)||(21792343-21792398)
chr3 (246-300)||(7583955-7584009)
chr3 (245-334)||(24107407-24107487)
chr3 (245-300)||(42592400-42592455)
chr3 (304-334)||(21792267-21792297)
chr3 (247-300)||(18024567-18024620)
chr3 (259-300)||(18270761-18270802)
chr3 (259-300)||(30267654-30267695)
chr3 (245-298)||(30385181-30385234)
chr3 (245-298)||(38758608-38758661)
chr3 (259-300)||(38771402-38771443)
chr3 (259-300)||(51891183-51891224)
[»] chr2 (13 HSPs)
chr2 (245-391)||(38695087-38695224)
chr2 (245-391)||(42962768-42962905)
chr2 (245-367)||(4734175-4734288)
chr2 (245-366)||(4410599-4410711)
chr2 (245-367)||(14159206-14159319)
chr2 (244-345)||(18166632-18166724)
chr2 (244-367)||(4733303-4733417)
chr2 (245-298)||(14160439-14160492)
chr2 (245-333)||(42963025-42963104)
chr2 (245-298)||(18171363-18171416)
chr2 (245-300)||(39110072-39110127)
chr2 (249-298)||(38694892-38694941)
chr2 (343-391)||(18171165-18171213)
[»] scaffold0069 (1 HSPs)
scaffold0069 (247-383)||(19897-20024)
[»] chr6 (10 HSPs)
chr6 (245-391)||(3659151-3659287)
chr6 (245-391)||(5367614-5367750)
chr6 (245-377)||(8286788-8286911)
chr6 (245-297)||(8287449-8287501)
chr6 (247-298)||(3720052-3720104)
chr6 (245-298)||(3658952-3659005)
chr6 (244-277)||(13119207-13119240)
chr6 (244-338)||(5367406-5367499)
chr6 (245-300)||(9899560-9899615)
chr6 (259-300)||(1292718-1292759)
[»] chr5 (16 HSPs)
chr5 (245-383)||(23322305-23322434)
chr5 (307-383)||(25088457-25088533)
chr5 (307-383)||(25146426-25146502)
chr5 (245-367)||(5841100-5841213)
chr5 (245-374)||(34634068-34634188)
chr5 (245-367)||(9379930-9380043)
chr5 (244-298)||(43183229-43183283)
chr5 (245-300)||(15933608-15933663)
chr5 (321-391)||(15933555-15933625)
chr5 (245-347)||(42792948-42793041)
chr5 (130-244)||(8342062-8342175)
chr5 (248-367)||(1501054-1501164)
chr5 (246-367)||(9380676-9380788)
chr5 (243-298)||(20244534-20244589)
chr5 (259-300)||(7278089-7278130)
chr5 (248-292)||(5840880-5840924)
[»] chr7 (9 HSPs)
chr7 (245-391)||(4265175-4265312)
chr7 (243-391)||(8905638-8905776)
chr7 (245-366)||(18471730-18471842)
chr7 (247-296)||(8328197-8328246)
chr7 (259-300)||(11687171-11687212)
chr7 (245-294)||(18470139-18470188)
chr7 (259-300)||(24417265-24417306)
chr7 (248-296)||(8342683-8342731)
chr7 (306-338)||(25749363-25749395)
[»] scaffold0008 (1 HSPs)
scaffold0008 (248-391)||(266819-266953)
[»] chr1 (9 HSPs)
chr1 (245-391)||(37499371-37499508)
chr1 (244-367)||(9114818-9114932)
chr1 (244-298)||(14903805-14903859)
chr1 (245-298)||(14904614-14904667)
chr1 (245-367)||(17690894-17691007)
chr1 (247-292)||(37499178-37499223)
chr1 (247-278)||(17689738-17689769)
chr1 (259-300)||(52051494-52051535)
chr1 (244-300)||(17738253-17738309)
[»] scaffold0006 (1 HSPs)
scaffold0006 (246-391)||(93633-93768)


Alignment Details
Target: chr8 (Bit Score: 105; Significance: 2e-52; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 15 - 197
Target Start/End: Complemental strand, 4442786 - 4442595
Alignment:
Q  15 atcacacattagaaaacatca--ggttaattagcaacaagtggcttgaatatagnnnnnnnnnnnngcaatgatatatcttatctatatata----gtta 108  Q
    |||||||||||||||||| ||  |||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||    ||||    
T  4442786 atcacacattagaaaacaccaaaggttaattagcaacaagtggcttgaatatagtttttcttttctgcaatgatatatcttatctatatatatatagtta 4442687  T
Q  109 caaatcttgcaccttttgcttagcatgaaaataacttgttcgaagaaaatttagaaac-tttgagtgtat--ggtatcatgtaattccatca 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||||||||||||    
T  4442686 caaatcttgcaccttttgcttagcatgaaaataacttgttcgaagaaaatttagaaacttttgagtgtatggggtatcatgtaattccatca 4442595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 102 - 244
Target Start/End: Complemental strand, 4444584 - 4444444
Alignment:
Q  102 atagttacaaatcttgcaccttttgcttagcatgaaaataacttgttcgaagaaaatttagaaactttgagtgtatggtatcatgtaattccatcacaat 201  Q
    ||||||||||||| ||||||  |||| |||||||||| |||| |||||||||||||||||||||||||||  ||||||||| ||||||||||| | ||||    
T  4444584 atagttacaaatcatgcaccccttgcgtagcatgaaa-taacatgttcgaagaaaatttagaaactttgaaggtatggtattatgtaattccaccgcaat 4444486  T
Q  202 ataatttaaaatgtggtgacatgcatgcagctaaaaacaagat 244  Q
    |||| || |||| | |||||||||  | |||| ||||||||||    
T  4444485 ataa-ttgaaatatagtgacatgcgagaagcttaaaacaagat 4444444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 246 - 347
Target Start/End: Complemental strand, 18203391 - 18203299
Alignment:
Q  246 gcttaattaatgatttggtcccttaagttatttatttgttacattttggtccctttgatcccataagttattaacgttacaatttggtctcttaaattag 345  Q
    |||||||||||||||||||||||||||||||||||| |||| |||||||         | ||||||||||||||||||||||||| ||||||||| ||||    
T  18203391 gcttaattaatgatttggtcccttaagttatttattggttatattttgg---------ttccataagttattaacgttacaatttagtctcttaagttag 18203301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 245 - 298
Target Start/End: Original strand, 10536000 - 10536053
Alignment:
Q  245 ggcttaattaatgatttggtcccttaagttatttatttgttacattttggtccc 298  Q
    ||||||||||||||||| |||||||||||||||| || ||||||||||||||||    
T  10536000 ggcttaattaatgatttagtcccttaagttatttgttggttacattttggtccc 10536053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 246 - 366
Target Start/End: Complemental strand, 32539520 - 32539409
Alignment:
Q  246 gcttaattaatgatttggtcccttaagttatttatttgttacattttggtccctttgatcccataagttattaacgttacaatttggtctcttaaattag 345  Q
    ||||||||||||||||||||||||||||||||| || |||||||         ||| ||| |||||||||||||| ||||| ||| ||| ||||| |||     
T  32539520 gcttaattaatgatttggtcccttaagttatttgttggttacat---------tttaatctcataagttattaacattacatttttgtcccttaacttat 32539430  T
Q  346 tatctgttagccaaataaatc 366  Q
     ||| ||||||||||||||||    
T  32539429 aatccgttagccaaataaatc 32539409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 101 - 203
Target Start/End: Original strand, 29584814 - 29584915
Alignment:
Q  101 tatagttacaaatcttgcaccttttgcttagcatgaaaataacttgttcgaagaaaatttagaaactttgagtgtatggtatcatgtaattccatcacaa 200  Q
    ||||||||||||||| | | || || || |||||||||||| |  | || |||||||||||||||||||  ||||||||||||||||||||| | |||||    
T  29584814 tatagttacaaatctaggaactcttcctaagcatgaaaata-caagatcaaagaaaatttagaaactttaggtgtatggtatcatgtaattcaaccacaa 29584912  T
Q  201 tat 203  Q
    |||    
T  29584913 tat 29584915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 245 - 298
Target Start/End: Complemental strand, 10536863 - 10536810
Alignment:
Q  245 ggcttaattaatgatttggtcccttaagttatttatttgttacattttggtccc 298  Q
    ||||||||||||||||||||||||||| |||||| || ||||||||||| ||||    
T  10536863 ggcttaattaatgatttggtcccttaaattatttgttggttacattttgatccc 10536810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 247 - 334
Target Start/End: Complemental strand, 30906060 - 30905982
Alignment:
Q  247 cttaattaatgatttggtcccttaagttatttatttgttacattttggtccctttgatcccataagttattaacgttacaatttggtc 334  Q
    ||||||||||||| ||||| |||||||||||| || |||||||||| |         |||||||||||||||||||||||||||||||    
T  30906060 cttaattaatgatgtggtctcttaagttatttgttggttacattttag---------tcccataagttattaacgttacaatttggtc 30905982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 204
Target Start/End: Original strand, 4426594 - 4426699
Alignment:
Q  101 tatagttacaaatcttgcaccttttgctta--gcatgaaaataacttgttcgaagaaaatttagaaactttgagtgtatggtatcatgtaattccatcac 198  Q
    |||||||| |||||| |||||| ||||| |  |||||||||||||| |  | ||||||||||||||||||| || ||||||||| || |||| ||  |||    
T  4426594 tatagttaaaaatctagcacctcttgctaattgcatgaaaataactagaacaaagaaaatttagaaactttcagggtatggtattatctaatccctccac 4426693  T
Q  199 aatata 204  Q
    ||||||    
T  4426694 aatata 4426699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 300
Target Start/End: Complemental strand, 5881882 - 5881822
Alignment:
Q  240 aagatggcttaattaatgatttggtcccttaagttatttatttgttacattttggtccctt 300  Q
    |||| |||||||||| | |||||||||| ||| |||||| |||||||| ||||||||||||    
T  5881882 aagaaggcttaattattcatttggtcccctaacttatttttttgttacgttttggtccctt 5881822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 300
Target Start/End: Complemental strand, 9237815 - 9237759
Alignment:
Q  244 tggcttaattaatgatttggtcccttaagttatttatttgttacattttggtccctt 300  Q
    ||||||||||| | |||||||||||||| |||||| || ||||| ||||||||||||    
T  9237815 tggcttaattattcatttggtcccttaacttattttttggttacgttttggtccctt 9237759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 292
Target Start/End: Original strand, 30905397 - 30905443
Alignment:
Q  246 gcttaattaatgatttggtcccttaagttatttatttgttacatttt 292  Q
    |||||||||||||||||||||||||| |||||| || |||| |||||    
T  30905397 gcttaattaatgatttggtcccttaaattatttgttggttatatttt 30905443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 300
Target Start/End: Complemental strand, 12823675 - 12823618
Alignment:
Q  243 atggcttaattaatgatttggtcccttaagttatttatttgttacattttggtccctt 300  Q
    |||||||||||| |  ||||||||||||| |||||| |||||| | ||||||||||||    
T  12823675 atggcttaattactcttttggtcccttaacttatttttttgtttcgttttggtccctt 12823618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 300
Target Start/End: Original strand, 14054953 - 14054994
Alignment:
Q  259 tttggtcccttaagttatttatttgttacattttggtccctt 300  Q
    ||||||||||||| |||||| |||||| ||||||||||||||    
T  14054953 tttggtcccttaacttatttttttgtttcattttggtccctt 14054994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 244 - 383
Target Start/End: Original strand, 9268022 - 9268152
Alignment:
Q  244 tggcttaattaatgatttggtcccttaagttatttatttgttacattttggtccctttgatcccataagttattaacgttacaatttggtctcttaaatt 343  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||         |||||||||||| |||||||||||||| ||||| ||    
T  9268022 tggcttaattaatgatttggtcccttaagttatttattggttacattttggtccc---------ataagttattaaagttacaatttggtcccttaagtt 9268112  T
Q  344 agtatctgttagccaaataaatccccaccgttagtctttt 383  Q
    ||||| |||||||||||||||||| |||||| ||||||||    
T  9268113 agtatttgttagccaaataaatcctcaccgtcagtctttt 9268152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 243 - 391
Target Start/End: Complemental strand, 49028601 - 49028462
Alignment:
Q  243 atggcttaattaatgatttggtcccttaagttatttatttgttacattttggtccctttgatcccataagttattaacgttacaatttggtctcttaaat 342  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||         |||||||| ||||||| |||||||||||||| ||||| |    
T  49028601 atggcttaattaatgatttggtcccttaagttatttattggttacattttgg---------tcccataaattattaatgttacaatttggtcccttaagt 49028511  T
Q  343 tagtatctgttagccaaataaatccccaccgttagtctttttccaaaac 391  Q
    |||||| |||||||||||||||||  || ||| |||||||| |||||||    
T  49028510 tagtatttgttagccaaataaatcttcagcgtcagtcttttgccaaaac 49028462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 244 - 391
Target Start/End: Complemental strand, 3991012 - 3990874
Alignment:
Q  244 tggcttaattaatgatttggtcccttaagttatttatttgttacattttggtccctttgatcccataagttattaacgttacaatttggtctcttaaatt 343  Q
    ||||||||||| |||||||||||||||||||| || || ||||||||||||||||         ||||||||||||||||||||||||||| ||||| ||    
T  3991012 tggcttaattattgatttggtcccttaagttaattgttggttacattttggtccc---------ataagttattaacgttacaatttggtcccttaagtt 3990922  T
Q  344 agtatctgttagccaaataaatccccaccgttagtctttttccaaaac 391  Q
    | ||||| |||||||||||||||| |||||| |||||||| |||||||    
T  3990921 aatatctattagccaaataaatcctcaccgtcagtcttttgccaaaac 3990874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 242 - 391
Target Start/End: Complemental strand, 10468819 - 10468679
Alignment:
Q  242 gatggcttaattaatgatttggtcccttaagttatttatttgttacattttggtccctttgatcccataagttattaacgttacaatttggtctcttaaa 341  Q
    ||||||||||||||| ||||||||||||||||||||| || |||||||||||||| |         |||||||||||||||||||||||||||  ||||     
T  10468819 gatggcttaattaatcatttggtcccttaagttatttgttggttacattttggtctc---------ataagttattaacgttacaatttggtccgttaag 10468729  T
Q  342 ttagtatctgttagccaaataaatccccaccgttagtctttttccaaaac 391  Q
    |||||||||| ||||||||||||||| |||||| |||| ||| |||||||    
T  10468728 ttagtatctgctagccaaataaatcctcaccgtcagtcgtttgccaaaac 10468679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 247 - 391
Target Start/End: Complemental strand, 12585492 - 12585357
Alignment:
Q  247 cttaattaatgatttggtcccttaagttatttatttgttacattttggtccctttgatcccataagttattaacgttacaatttggtctcttaaattagt 346  Q
    |||||||||||||||||||||||||||||||| || |||||||||||         ||| |||||||||||||| ||||||||||||| ||||| |||||    
T  12585492 cttaattaatgatttggtcccttaagttatttgttggttacattttg---------atctcataagttattaacattacaatttggtcccttaagttagt 12585402  T
Q  347 atctgttagccaaataaatccccaccgttagtctttttccaaaac 391  Q
    || |||||||||||||||||  |||  | |||||||| |||||||    
T  12585401 atatgttagccaaataaatcttcactatcagtcttttgccaaaac 12585357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 246 - 374
Target Start/End: Original strand, 45667232 - 45667351
Alignment:
Q  246 gcttaattaatgatttggtcccttaagttatttatttgttacattttggtccctttgatcccataagttattaacgttacaatttggtctcttaaattag 345  Q
    ||||||||||||||||||||||||||||||||| || |||||||||||||| |         |||||||||||||||||||||||| | | |||| |||     
T  45667232 gcttaattaatgatttggtcccttaagttatttgttggttacattttggtctc---------ataagttattaacgttacaatttgattttttaatttaa 45667322  T
Q  346 tatctgttagccaaataaatccccaccgt 374  Q
    |||||||||||||||||||||| ||||||    
T  45667323 tatctgttagccaaataaatcctcaccgt 45667351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 246 - 367
Target Start/End: Original strand, 52677553 - 52677665
Alignment:
Q  246 gcttaattaatgatttggtcccttaagttatttatttgttacattttggtccctttgatcccataagttattaacgttacaatttggtctcttaaattag 345  Q
    ||||||||||| ||||||||||||||||||||| || |||||| |||||||||         |||||||||||||||||||||||||||  |||| ||||    
T  52677553 gcttaattaattatttggtcccttaagttatttgttggttacaatttggtccc---------ataagttattaacgttacaatttggtccattaagttag 52677643  T
Q  346 tatctgttagccaaataaatcc 367  Q
    ||| ||||||||||||||||||    
T  52677644 tatatgttagccaaataaatcc 52677665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 308 - 391
Target Start/End: Original strand, 16067378 - 16067461
Alignment:
Q  308 ataagttattaacgttacaatttggtctcttaaattagtatctgttagccaaataaatccccaccgttagtctttttccaaaac 391  Q
    |||| ||||||||||||||||||||||| |||| ||||||| || ||||||||||||||| |||||| | |||||| |||||||    
T  16067378 ataaattattaacgttacaatttggtcttttaagttagtatttgctagccaaataaatcctcaccgtcaatcttttgccaaaac 16067461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 245 - 367
Target Start/End: Complemental strand, 9450994 - 9450881
Alignment:
Q  245 ggcttaattaatgatttggtcccttaagttatttatttgttacattttggtccctttgatcccataagttattaacgttacaatttggtctcttaaatta 344  Q
    |||||||||||||||||||||||||||||||||| || ||||| ||||||         ||||||||||||||||||||||  ||||||| ||||| | |    
T  9450994 ggcttaattaatgatttggtcccttaagttatttgttggttacgttttgg---------tcccataagttattaacgttacgttttggtcccttaactca 9450904  T
Q  345 gtatctgttagccaaataaatcc 367  Q
       ||||||||||||||||||||    
T  9450903 tactctgttagccaaataaatcc 9450881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 306 - 367
Target Start/End: Original strand, 622109 - 622170
Alignment:
Q  306 ccataagttattaacgttacaatttggtctcttaaattagtatctgttagccaaataaatcc 367  Q
    ||||| ||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||    
T  622109 ccatacgttattaacgttataatttggtcccttaaattagtatttgttagccaaataaatcc 622170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 245 - 376
Target Start/End: Original strand, 17931288 - 17931410
Alignment:
Q  245 ggcttaattaatgatttggtcccttaagttatttatttgttacattttggtccctttgatcccataagttattaacgttacaatttggtctcttaaatta 344  Q
    |||||||||||||| |||||||||||||||||||||| |||||| |||||         ||||||||||||||||||||||||  ||||| ||||| |||    
T  17931288 ggcttaattaatgaattggtcccttaagttatttattggttacaatttgg---------tcccataagttattaacgttacaaaatggtcccttaagtta 17931378  T
Q  345 gtatctgttagccaaataaatccccaccgtta 376  Q
       || || |||||| |||||||| |||||||    
T  17931379 cactccgtcagccaattaaatcccaaccgtta 17931410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 240 - 374
Target Start/End: Original strand, 4437675 - 4437800
Alignment:
Q  240 aagatggcttaattaatgatttggtcccttaagttatttatttgttacattttggtccctttgatcccataagttattaacgttacaatttggtctctta 339  Q
    |||| ||||||||||||| |||||||| |||| |||||| || |||||| |||||||||         ||||||||||||||||||  |||||||  |||    
T  4437675 aagaaggcttaattaatggtttggtccattaaattatttgttggttacaatttggtccc---------ataagttattaacgttacgttttggtccttta 4437765  T
Q  340 aattagtatctgttagccaaataaatccccaccgt 374  Q
    | ||||  ||||||||||||||||||||| |||||    
T  4437766 agttagactctgttagccaaataaatcccgaccgt 4437800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 244 - 298
Target Start/End: Complemental strand, 17932212 - 17932158
Alignment:
Q  244 tggcttaattaatgatttggtcccttaagttatttatttgttacattttggtccc 298  Q
    ||||||||||||||| |||||||||||||||||||||| |||||| |||||||||    
T  17932212 tggcttaattaatgaattggtcccttaagttatttattggttacaatttggtccc 17932158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 308 - 366
Target Start/End: Original strand, 21038168 - 21038226
Alignment:
Q  308 ataagttattaacgttacaatttggtctcttaaattagtatctgttagccaaataaatc 366  Q
    |||||||||||||||||||||||||||  |||| ||||||| |||||||||||||||||    
T  21038168 ataagttattaacgttacaatttggtcctttaagttagtatatgttagccaaataaatc 21038226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 245 - 298
Target Start/End: Original strand, 10286410 - 10286463
Alignment:
Q  245 ggcttaattaatgatttggtcccttaagttatttatttgttacattttggtccc 298  Q
    |||||||||||||||||||||||||||||||||| || |||||||||| |||||    
T  10286410 ggcttaattaatgatttggtcccttaagttatttgttggttacattttagtccc 10286463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 245 - 296
Target Start/End: Complemental strand, 28451612 - 28451561
Alignment:
Q  245 ggcttaattaatgatttggtcccttaagttatttatttgttacattttggtc 296  Q
    ||||||||||||||||| |||||||||||||||| || ||||||||||||||    
T  28451612 ggcttaattaatgatttagtcccttaagttatttgttggttacattttggtc 28451561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 248 - 346
Target Start/End: Original strand, 25225793 - 25225882
Alignment:
Q  248 ttaattaatgatttggtcccttaagttatttatttgttacattttggtccctttgatcccataagttattaacgttacaatttggtctcttaaattagt 346  Q
    ||||||||||||||||||||||||||||||| || |||| |||||||         || |||||||||||||||||||||||| ||| ||||| |||||    
T  25225793 ttaattaatgatttggtcccttaagttatttgttggttatattttgg---------tctcataagttattaacgttacaattttgtcgcttaagttagt 25225882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 245 - 298
Target Start/End: Original strand, 28450750 - 28450803
Alignment:
Q  245 ggcttaattaatgatttggtcccttaagttatttatttgttacattttggtccc 298  Q
    ||||||||||||||||||||||||||| |||||| || ||||||||||| ||||    
T  28450750 ggcttaattaatgatttggtcccttaaattatttgttggttacattttgatccc 28450803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 307 - 374
Target Start/End: Complemental strand, 4439056 - 4438989
Alignment:
Q  307 cataagttattaacgttacaatttggtctcttaaattagtatctgttagccaaataaatccccaccgt 374  Q
    |||||||||||||||||||  ||||||||||||| ||||  ||||||||  ||||||||||| |||||    
T  4439056 cataagttattaacgttacgttttggtctcttaagttagactctgttagttaaataaatccctaccgt 4438989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 245 - 296
Target Start/End: Original strand, 9449715 - 9449766
Alignment:
Q  245 ggcttaattaatgatttggtcccttaagttatttatttgttacattttggtc 296  Q
    |||||||||||||||||||||| ||||||||||| || ||||| ||||||||    
T  9449715 ggcttaattaatgatttggtccattaagttatttgttggttacgttttggtc 9449766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 298
Target Start/End: Original strand, 12315854 - 12315908
Alignment:
Q  244 tggcttaattaatgatttggtcccttaagttatttatttgttacattttggtccc 298  Q
    ||||||||||||||||||||||| ||||||||||| |  |||||| |||||||||    
T  12315854 tggcttaattaatgatttggtcctttaagttatttgtaggttacaatttggtccc 12315908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 292
Target Start/End: Original strand, 10468479 - 10468527
Alignment:
Q  244 tggcttaattaatgatttggtcccttaagttatttatttgttacatttt 292  Q
    ||||||||||| |||| |||||||||||||||||| || ||||||||||    
T  10468479 tggcttaattactgatgtggtcccttaagttatttgttggttacatttt 10468527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 292
Target Start/End: Complemental strand, 622391 - 622346
Alignment:
Q  247 cttaattaatgatttggtcccttaagttatttatttgttacatttt 292  Q
    ||||||||||||| || ||||||||||||||| || ||||||||||    
T  622391 cttaattaatgatgtgatcccttaagttatttgttggttacatttt 622346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 285
Target Start/End: Complemental strand, 45667406 - 45667365
Alignment:
Q  244 tggcttaattaatgatttggtcccttaagttatttatttgtt 285  Q
    |||||||||||||||| |||||| ||||||||||| ||||||    
T  45667406 tggcttaattaatgatgtggtcctttaagttatttgtttgtt 45667365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 298
Target Start/End: Original strand, 49028267 - 49028316
Alignment:
Q  249 taattaatgatttggtcccttaagttatttatttgttacattttggtccc 298  Q
    ||||| ||||| |||||||||||||||||| || |||||||||| |||||    
T  49028267 taattgatgatgtggtcccttaagttatttgttggttacattttagtccc 49028316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 8e-37; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 245 - 391
Target Start/End: Original strand, 24107151 - 24107288
Alignment:
Q  245 ggcttaattaatgatttggtcccttaagttatttatttgttacattttggtccctttgatcccataagttattaacgttacaatttggtctcttaaatta 344  Q
    ||||||||||||||||||||||||| |||||||| || ||||||||||||||||         ||||||||||||||||||||||||||| ||||| |||    
T  24107151 ggcttaattaatgatttggtcccttgagttatttgttggttacattttggtccc---------ataagttattaacgttacaatttggtcacttaagtta 24107241  T
Q  345 gtatctgttagccaaataaatccccaccgttagtctttttccaaaac 391  Q
    || |||||||||||||||||||| |||||| |||||||| |||||||    
T  24107242 gtttctgttagccaaataaatcctcaccgtcagtcttttgccaaaac 24107288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 245 - 391
Target Start/End: Original strand, 27864799 - 27864936
Alignment:
Q  245 ggcttaattaatgatttggtcccttaagttatttatttgttacattttggtccctttgatcccataagttattaacgttacaatttggtctcttaaatta 344  Q
    ||||||||||||||||||||||| |||||||||| || ||||||||||||||||         ||||||||||||||||||||||||||| ||||| |||    
T  27864799 ggcttaattaatgatttggtcccgtaagttatttgttggttacattttggtccc---------ataagttattaacgttacaatttggtcccttaagtta 27864889  T
Q  345 gtatctgttagccaaataaatccccaccgttagtctttttccaaaac 391  Q
    |||| |||||||||||||||||| ||| || |||||||| |||||||    
T  27864890 gtatttgttagccaaataaatcctcactgtcagtcttttgccaaaac 27864936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 248 - 367
Target Start/End: Complemental strand, 54446349 - 54446238
Alignment:
Q  248 ttaattaatgatttggtcccttaagttatttatttgttacattttggtccctttgatcccataagttattaacgttacaatttggtctcttaaattagta 347  Q
    ||||||||||||||||||||||||||||||| || ||||||||||        || ||| ||||||||||||| |||||||||||||| |||| ||||||    
T  54446349 ttaattaatgatttggtcccttaagttatttgttagttacatttt--------tggtcctataagttattaacattacaatttggtcttttaagttagta 54446258  T
Q  348 tctgttagccaaataaatcc 367  Q
    | ||||||||||||||||||    
T  54446257 tatgttagccaaataaatcc 54446238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 244 - 391
Target Start/End: Complemental strand, 38758944 - 38758807
Alignment:
Q  244 tggcttaattaatgatttggtcccttaagttatttatttgttacattttggtccctttgatcccataagttattaacgttacaatttggtctcttaaatt 343  Q
    ||||||||||||||||||||||||||||||||||| || ||||||||||||         ||||||||||||| ||||||| ||||||||| | ||| ||    
T  38758944 tggcttaattaatgatttggtcccttaagttatttgttggttacattttgg---------tcccataagttatcaacgttataatttggtc-cctaagtt 38758855  T
Q  344 agtatctgttagccaaataaatccccaccgttagtctttttccaaaac 391  Q
    ||||| |||||||||||||||||  |||  |||| ||||| |||||||    
T  38758854 agtatatgttagccaaataaatcttcacttttagccttttgccaaaac 38758807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 245 - 390
Target Start/End: Original strand, 14812427 - 14812563
Alignment:
Q  245 ggcttaattaatgatttggtcccttaagttatttatttgttacattttggtccctttgatcccataagttattaacgttacaatttggtctcttaaatta 344  Q
    |||||||| ||||||||| ||  ||||||||||| || ||||||||||||||||         |||||||||||||||||||||||  || ||||  |||    
T  14812427 ggcttaatcaatgatttgatcatttaagttattttttagttacattttggtccc---------ataagttattaacgttacaattttctcccttaggtta 14812517  T
Q  345 gtatctgttagccaaataaatccccaccgttagtctttttccaaaa 390  Q
    |||| ||| ||||| |||||||| ||| ||||||||||| ||||||    
T  14812518 gtatttgtgagccatataaatcctcacggttagtcttttgccaaaa 14812563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 245 - 298
Target Start/End: Complemental strand, 31596823 - 31596770
Alignment:
Q  245 ggcttaattaatgatttggtcccttaagttatttatttgttacattttggtccc 298  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  31596823 ggcttaattaatgatttggtcccttaagttatttgttggttacattttggtccc 31596770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 245 - 298
Target Start/End: Complemental strand, 46685601 - 46685548
Alignment:
Q  245 ggcttaattaatgatttggtcccttaagttatttatttgttacattttggtccc 298  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  46685601 ggcttaattaatgatttggtcccttaaattatttattggttacattttggtccc 46685548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 245 - 391
Target Start/End: Complemental strand, 3171822 - 3171688
Alignment:
Q  245 ggcttaattaatgatttggtcccttaagttatttatttgttacattttggtccctttgatcccataagttattaacgttacaa-tttggtctcttaaatt 343  Q
    |||||||||||||||||||||||||||||||||| |  ||||||||||          |||||||    |||||| ||||||| ||||||| ||||| ||    
T  3171822 ggcttaattaatgatttggtcccttaagttatttgtcggttacattttc---------atcccat----tattaatgttacaaatttggtcccttaagtt 3171736  T
Q  344 agtatctgttagccaaataaatccccaccgttagtctttttccaaaac 391  Q
    |||||||||| ||||||||||||| |||||| | |||||| |||||||    
T  3171735 agtatctgttggccaaataaatcctcaccgtcattcttttgccaaaac 3171688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 244 - 294
Target Start/End: Original strand, 11422378 - 11422428
Alignment:
Q  244 tggcttaattaatgatttggtcccttaagttatttatttgttacattttgg 294  Q
    ||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  11422378 tggcttaattaatgatttggtcccttaagttatttgttggttacattttgg 11422428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 244 - 298
Target Start/End: Original strand, 18025879 - 18025933
Alignment:
Q  244 tggcttaattaatgatttggtcccttaagttatttatttgttacattttggtccc 298  Q
    |||||||||||||| |||||||||||||||||||| || ||||||||||||||||    
T  18025879 tggcttaattaatgctttggtcccttaagttatttgttggttacattttggtccc 18025933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 245 - 298
Target Start/End: Original strand, 16907930 - 16907983
Alignment:
Q  245 ggcttaattaatgatttggtcccttaagttatttatttgttacattttggtccc 298  Q
    |||||||||||||||||||||||||||||||||| || ||||| ||||||||||    
T  16907930 ggcttaattaatgatttggtcccttaagttatttgttggttacgttttggtccc 16907983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 310 - 391
Target Start/End: Complemental strand, 19860770 - 19860689
Alignment:
Q  310 aagttattaacgttacaatttggtctcttaaattagtatctgttagccaaataaatccccaccgttagtctttttccaaaac 391  Q
    ||||||||||| |||||||||||||  |||| |||  |||| |||||||||||||||| |||||| |||||||| |||||||    
T  19860770 aagttattaacattacaatttggtcctttaagttaaaatctattagccaaataaatcctcaccgtcagtcttttgccaaaac 19860689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 245 - 334
Target Start/End: Complemental strand, 27865134 - 27865054
Alignment:
Q  245 ggcttaattaatgatttggtcccttaagttatttatttgttacattttggtccctttgatcccataagttattaacgttacaatttggtc 334  Q
    ||||||||||||||| |||||||||||||||||| || |||||||||| |         |||||||||||||||||||||||||||||||    
T  27865134 ggcttaattaatgatgtggtcccttaagttatttgttggttacattttag---------tcccataagttattaacgttacaatttggtc 27865054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 245 - 374
Target Start/End: Original strand, 46684098 - 46684218
Alignment:
Q  245 ggcttaattaatgatttggtcccttaagttatttatttgttacattttggtccctttgatcccataagttattaacgttacaatttggtctcttaaatta 344  Q
    ||||||||||||||||||||| |||||||||||| || |||||||         |||||||||||||||||||||| ||||  ||||||| ||||| |||    
T  46684098 ggcttaattaatgatttggtcgcttaagttatttgttggttacat---------tttgatcccataagttattaacattacgttttggtcccttaagtta 46684188  T
Q  345 gtatctgttagccaaataaatccccaccgt 374  Q
       || || ||||||||||||| |||||||    
T  46684189 tcttccgtcagccaaataaatcgccaccgt 46684218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 245 - 298
Target Start/End: Original strand, 3171489 - 3171542
Alignment:
Q  245 ggcttaattaatgatttggtcccttaagttatttatttgttacattttggtccc 298  Q
    ||||||||||||||| |||||||||||||||||| || |||||||||| |||||    
T  3171489 ggcttaattaatgatgtggtcccttaagttatttgttggttacattttagtccc 3171542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 245 - 334
Target Start/End: Original strand, 19860491 - 19860571
Alignment:
Q  245 ggcttaattaatgatttggtcccttaagttatttatttgttacattttggtccctttgatcccataagttattaacgttacaatttggtc 334  Q
    ||||||||||||||| |||||  |||||||||||||| |||||||||| |         |||||||||||||||||||||||||||||||    
T  19860491 ggcttaattaatgatgtggtctattaagttatttattggttacattttag---------tcccataagttattaacgttacaatttggtc 19860571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 309 - 363
Target Start/End: Complemental strand, 21792398 - 21792343
Alignment:
Q  309 taagttattaacgttacaatttggtct-cttaaattagtatctgttagccaaataa 363  Q
    ||||||||||||||||||||||||||| ||||| ||||||| ||| ||||||||||    
T  21792398 taagttattaacgttacaatttggtctccttaagttagtatttgtaagccaaataa 21792343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 300
Target Start/End: Original strand, 7583955 - 7584009
Alignment:
Q  246 gcttaattaatgatttggtcccttaagttatttatttgttacattttggtccctt 300  Q
    ||||||| |||| ||||||||||||| |||||| |||||| ||||||||||||||    
T  7583955 gcttaataaatgctttggtcccttaacttatttttttgtttcattttggtccctt 7584009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 245 - 334
Target Start/End: Complemental strand, 24107487 - 24107407
Alignment:
Q  245 ggcttaattaatgatttggtcccttaagttatttatttgttacattttggtccctttgatcccataagttattaacgttacaatttggtc 334  Q
    ||||||||||||||| |||||| |||||||| || || |||||||||| |||||         |||||||||||||||||||||||||||    
T  24107487 ggcttaattaatgatgtggtccattaagttaattgttggttacattttagtccc---------ataagttattaacgttacaatttggtc 24107407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 245 - 300
Target Start/End: Original strand, 42592400 - 42592455
Alignment:
Q  245 ggcttaattaatgatttggtcccttaagttatttatttgttacattttggtccctt 300  Q
    |||||||||| | |||||||||||||| |||||| || ||| ||||||||||||||    
T  42592400 ggcttaattactcatttggtcccttaacttattttttggtttcattttggtccctt 42592455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 334
Target Start/End: Original strand, 21792267 - 21792297
Alignment:
Q  304 tcccataagttattaacgttacaatttggtc 334  Q
    |||||||||||||||||||||||||||||||    
T  21792267 tcccataagttattaacgttacaatttggtc 21792297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 300
Target Start/End: Original strand, 18024567 - 18024620
Alignment:
Q  247 cttaattaatgatttggtcccttaagttatttatttgttacattttggtccctt 300  Q
    |||||||| | |||||||||||||| |||||| || ||| ||||||||||||||    
T  18024567 cttaattactcatttggtcccttaacttattttttggtttcattttggtccctt 18024620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 300
Target Start/End: Original strand, 18270761 - 18270802
Alignment:
Q  259 tttggtcccttaagttatttatttgttacattttggtccctt 300  Q
    ||||||||||||| |||||| |||||| ||||||||||||||    
T  18270761 tttggtcccttaacttatttttttgtttcattttggtccctt 18270802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 300
Target Start/End: Complemental strand, 30267695 - 30267654
Alignment:
Q  259 tttggtcccttaagttatttatttgttacattttggtccctt 300  Q
    ||||||||||||| |||||| |||||| ||||||||||||||    
T  30267695 tttggtcccttaacttatttttttgtttcattttggtccctt 30267654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 298
Target Start/End: Original strand, 30385181 - 30385234
Alignment:
Q  245 ggcttaattaatgatttggtcccttaagttatttatttgttacattttggtccc 298  Q
    |||||||||| | |||||||||||||| |||||| || ||| ||||||||||||    
T  30385181 ggcttaattactcatttggtcccttaacttattttttggtttcattttggtccc 30385234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 298
Target Start/End: Original strand, 38758608 - 38758661
Alignment:
Q  245 ggcttaattaatgatttggtcccttaagttatttatttgttacattttggtccc 298  Q
    |||||||||| |||| | |||||||||||||||| || |||||||||| |||||    
T  38758608 ggcttaattagtgatgttgtcccttaagttatttgttggttacattttagtccc 38758661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 300
Target Start/End: Original strand, 38771402 - 38771443
Alignment:
Q  259 tttggtcccttaagttatttatttgttacattttggtccctt 300  Q
    ||||||||||||| |||||| |||||| ||||||||||||||    
T  38771402 tttggtcccttaatttatttttttgtttcattttggtccctt 38771443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 300
Target Start/End: Complemental strand, 51891224 - 51891183
Alignment:
Q  259 tttggtcccttaagttatttatttgttacattttggtccctt 300  Q
    ||||||||||||| |||||| |||||| ||||||||||||||    
T  51891224 tttggtcccttaacttatttttttgtttcattttggtccctt 51891183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 8e-37; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 245 - 391
Target Start/End: Complemental strand, 38695224 - 38695087
Alignment:
Q  245 ggcttaattaatgatttggtcccttaagttatttatttgttacattttggtccctttgatcccataagttattaacgttacaatttggtctcttaaatta 344  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||         |||| |||||||||||||||||||||| ||||| |||    
T  38695224 ggcttaattaatgatttggtcccttaagttatttattggttacattttggtccc---------ataaattattaacgttacaatttggtcccttaagtta 38695134  T
Q  345 gtatctgttagccaaataaatccccaccgttagtctttttccaaaac 391  Q
    |||| |||||||||||||||||| || ||| |||||||| |||||||    
T  38695133 gtatttgttagccaaataaatcctcaacgtcagtcttttgccaaaac 38695087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 245 - 391
Target Start/End: Original strand, 42962768 - 42962905
Alignment:
Q  245 ggcttaattaatgatttggtcccttaagttatttatttgttacattttggtccctttgatcccataagttattaacgttacaatttggtctcttaaatta 344  Q
    |||||||||||||||||||||||||| ||||||| || ||| |||||||         ||| ||||||| | |||||||||||||||||| ||||| |||    
T  42962768 ggcttaattaatgatttggtcccttaggttatttgttggttgcattttg---------atctcataagtgactaacgttacaatttggtcccttaagtta 42962858  T
Q  345 gtatctgttagccaaataaatccccaccgttagtctttttccaaaac 391  Q
    |||| |||||||||||||||||| |||||| ||||||||||||||||    
T  42962859 gtatatgttagccaaataaatcctcaccgtcagtctttttccaaaac 42962905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 245 - 367
Target Start/End: Complemental strand, 4734288 - 4734175
Alignment:
Q  245 ggcttaattaatgatttggtcccttaagttatttatttgttacattttggtccctttgatcccataagttattaacgttacaatttggtctcttaaatta 344  Q
    |||||||||||||| ||||||||||||||||||| || |||||||||||         |||| ||||||||||||||||||  ||||||| ||||| |||    
T  4734288 ggcttaattaatgaattggtcccttaagttatttgttggttacattttg---------atcctataagttattaacgttacgttttggtcccttaactta 4734198  T
Q  345 gtatctgttagccaaataaatcc 367  Q
      |||||||||||||||||||||    
T  4734197 taatctgttagccaaataaatcc 4734175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 245 - 366
Target Start/End: Complemental strand, 4410711 - 4410599
Alignment:
Q  245 ggcttaattaatgatttggtcccttaagttatttatttgttacattttggtccctttgatcccataagttattaacgttacaatttggtctcttaaatta 344  Q
    |||||||||||||||||||||||||||||||||| || |||||| |||||         |||| ||||||||||||| |||| ||||||| ||||| |||    
T  4410711 ggcttaattaatgatttggtcccttaagttatttgttggttacaatttgg---------tcccgtaagttattaacgctacattttggtcccttaagtta 4410621  T
Q  345 gtatctgttagccaaataaatc 366  Q
    |  |||||||||||||||||||    
T  4410620 gactctgttagccaaataaatc 4410599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 245 - 367
Target Start/End: Original strand, 14159206 - 14159319
Alignment:
Q  245 ggcttaattaatgatttggtcccttaagttatttatttgttacattttggtccctttgatcccataagttattaacgttacaatttggtctcttaaatta 344  Q
    |||||||||||||||||||||||||||||||||| || ||||| ||||||         ||||||||||||||||||||||  ||||||| ||||| | |    
T  14159206 ggcttaattaatgatttggtcccttaagttatttgttggttacgttttgg---------tcccataagttattaacgttacgttttggtcccttaactca 14159296  T
Q  345 gtatctgttagccaaataaatcc 367  Q
       ||||||||||||||||||||    
T  14159297 tactctgttagccaaataaatcc 14159319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 244 - 345
Target Start/End: Original strand, 18166632 - 18166724
Alignment:
Q  244 tggcttaattaatgatttggtcccttaagttatttatttgttacattttggtccctttgatcccataagttattaacgttacaatttggtctcttaaatt 343  Q
    |||||||||||||||||||||||||||| |||||| || |||||||         ||||||| |||||||||||||||||||||||||||| ||||| ||    
T  18166632 tggcttaattaatgatttggtcccttaaattatttgttggttacat---------tttgatctcataagttattaacgttacaatttggtcccttaagtt 18166722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 244 - 367
Target Start/End: Original strand, 4733303 - 4733417
Alignment:
Q  244 tggcttaattaatgatttggtcccttaagttatttatttgttacattttggtccctttgatcccataagttattaacgttacaatttggtctcttaaatt 343  Q
    ||||||||||||||||||| |||||||| |||||| || ||||||||||||         ||||||||||||||||| ||||  ||||||| ||||| ||    
T  4733303 tggcttaattaatgatttgatcccttaaattatttgttggttacattttgg---------tcccataagttattaacattacgttttggtcccttaattt 4733393  T
Q  344 agtatctgttagccaaataaatcc 367  Q
    |  ||| |||||||||||||||||    
T  4733394 ataatccgttagccaaataaatcc 4733417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 245 - 298
Target Start/End: Complemental strand, 14160492 - 14160439
Alignment:
Q  245 ggcttaattaatgatttggtcccttaagttatttatttgttacattttggtccc 298  Q
    |||||||||||||||||||||| ||||||||||| || ||||| ||||||||||    
T  14160492 ggcttaattaatgatttggtccattaagttatttgttggttacgttttggtccc 14160439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 245 - 333
Target Start/End: Complemental strand, 42963104 - 42963025
Alignment:
Q  245 ggcttaattaatgatttggtcccttaagttatttatttgttacattttggtccctttgatcccataagttattaacgttacaatttggt 333  Q
    ||||||||||||||| |||||||||||||||||| || |||||||||| |         || |||||||||||||||||||||||||||    
T  42963104 ggcttaattaatgatgtggtcccttaagttatttgttggttacattttag---------tctcataagttattaacgttacaatttggt 42963025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 245 - 298
Target Start/End: Complemental strand, 18171416 - 18171363
Alignment:
Q  245 ggcttaattaatgatttggtcccttaagttatttatttgttacattttggtccc 298  Q
    ||||||||||||||| ||||||||||| |||||| || |||||||||| |||||    
T  18171416 ggcttaattaatgatatggtcccttaaattatttgttggttacattttagtccc 18171363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 245 - 300
Target Start/End: Original strand, 39110072 - 39110127
Alignment:
Q  245 ggcttaattaatgatttggtcccttaagttatttatttgttacattttggtccctt 300  Q
    |||||||||| | |||||||||||||| |||||| || ||| ||||||||||||||    
T  39110072 ggcttaattactcatttggtcccttaacttattttttggtttcattttggtccctt 39110127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 298
Target Start/End: Original strand, 38694892 - 38694941
Alignment:
Q  249 taattaatgatttggtcccttaagttatttatttgttacattttggtccc 298  Q
    ||||| ||||| |||||||||||||||||| || |||||||||| |||||    
T  38694892 taattgatgatgtggtcccttaagttatttgttggttacattttagtccc 38694941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 343 - 391
Target Start/End: Original strand, 18171165 - 18171213
Alignment:
Q  343 tagtatctgttagccaaataaatccccaccgttagtctttttccaaaac 391  Q
    |||||| ||||||||||||||||||  ||||| | ||||||||||||||    
T  18171165 tagtatatgttagccaaataaatccttaccgtcaatctttttccaaaac 18171213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 247 - 383
Target Start/End: Original strand, 19897 - 20024
Alignment:
Q  247 cttaattaatgatttggtcccttaagttatttatttgttacattttggtccctttgatcccataagttattaacgttacaatttggtctcttaaattagt 346  Q
    |||||||||||||||||||||||||||||||| || |||||||||||||| |         ||||||||||||||||||||||||||| ||||| |||||    
T  19897 cttaattaatgatttggtcccttaagttatttgttggttacattttggtcgc---------ataagttattaacgttacaatttggtcccttaagttagt 19987  T
Q  347 atctgttagccaaataaatccccaccgttagtctttt 383  Q
    ||||||||||||||||||||| |||||| ||||||||    
T  19988 atctgttagccaaataaatcctcaccgtcagtctttt 20024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 2e-34; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 245 - 391
Target Start/End: Complemental strand, 3659287 - 3659151
Alignment:
Q  245 ggcttaattaatgatttggtcccttaagttatttatttgttacattttggtccctttgatcccataagttattaacgttacaatttggtctcttaaatta 344  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||||||         ||||||||||||| ||||||||||||| ||||| |||    
T  3659287 ggcttaattaatgatttggtcccttaagttatttgttagttacattttggtccc---------ataagttattaac-ttacaatttggtcccttaagtta 3659198  T
Q  345 gtatctgttagccaaataaatccccaccgttagtctttttccaaaac 391  Q
    |||| |||||||||||||||||| |||||| |||||||| |||||||    
T  3659197 gtatttgttagccaaataaatcctcaccgtgagtcttttgccaaaac 3659151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 245 - 391
Target Start/End: Complemental strand, 5367750 - 5367614
Alignment:
Q  245 ggcttaattaatgatttggtcccttaagttatttatttgttacattttggtccctttgatcccataagttattaacgttacaatttggtctcttaaatta 344  Q
    |||||||||||||||||||||| ||||||||||| || ||||||||||||| ||         ||||||||||||||||||||||||||| ||||| |||    
T  5367750 ggcttaattaatgatttggtcc-ttaagttatttgttggttacattttggttcc---------ataagttattaacgttacaatttggtcccttaagtta 5367661  T
Q  345 gtatctgttagccaaataaatccccaccgttagtctttttccaaaac 391  Q
    |||| |||||||||||||||||| ||||||||||||||| |||||||    
T  5367660 gtatttgttagccaaataaatcctcaccgttagtcttttgccaaaac 5367614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 245 - 377
Target Start/End: Original strand, 8286788 - 8286911
Alignment:
Q  245 ggcttaattaatgatttggtcccttaagttatttatttgttacattttggtccctttgatcccataagttattaacgttacaatttggtctcttaaatta 344  Q
    ||||||||||||||||| |||||||||||||||| || |||||||||||||||||         ||||| |||||||||||| ||| ||  ||||| |||    
T  8286788 ggcttaattaatgatttagtcccttaagttatttgttggttacattttggtccct---------taagtaattaacgttacattttagttccttaagtta 8286878  T
Q  345 gtatctgttagccaaataaatccccaccgttag 377  Q
       ||||| | ||||||||||||||||||||||    
T  8286879 tcttctgtcaaccaaataaatccccaccgttag 8286911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 245 - 297
Target Start/End: Complemental strand, 8287501 - 8287449
Alignment:
Q  245 ggcttaattaatgatttggtcccttaagttatttatttgttacattttggtcc 297  Q
    |||||||||||||||||||||||||||||||||| || |||||||||| ||||    
T  8287501 ggcttaattaatgatttggtcccttaagttatttgttggttacattttagtcc 8287449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 247 - 298
Target Start/End: Original strand, 3720052 - 3720104
Alignment:
Q  247 cttaattaatgatttggtcccttaagtta-tttatttgttacattttggtccc 298  Q
    ||||||||||||||||||||||||||||| ||| ||| |||||||||||||||    
T  3720052 cttaattaatgatttggtcccttaagttattttttttattacattttggtccc 3720104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 245 - 298
Target Start/End: Original strand, 3658952 - 3659005
Alignment:
Q  245 ggcttaattaatgatttggtcccttaagttatttatttgttacattttggtccc 298  Q
    |||||||||| |||| ||||||||||||||||||||| |||||| ||| |||||    
T  3658952 ggcttaattactgatgtggtcccttaagttatttattggttacagtttagtccc 3659005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 244 - 277
Target Start/End: Complemental strand, 13119240 - 13119207
Alignment:
Q  244 tggcttaattaatgatttggtcccttaagttatt 277  Q
    ||||||||||||||||||||||||||||||||||    
T  13119240 tggcttaattaatgatttggtcccttaagttatt 13119207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 338
Target Start/End: Original strand, 5367406 - 5367499
Alignment:
Q  244 tggcttaattaatgatttggtcccttaagttatttatttgttacattttggtccctttga-tcccataagttattaacgttacaatttggtctctt 338  Q
    ||||||||||| |||| |||||||||||||||||| || ||||||  | | | | ||| | || |||||||||||||| |||||||||||||||||    
T  5367406 tggcttaattactgatatggtcccttaagttatttgttggttaca--tggttacattttagtctcataagttattaacattacaatttggtctctt 5367499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 245 - 300
Target Start/End: Original strand, 9899560 - 9899615
Alignment:
Q  245 ggcttaattaatgatttggtcccttaagttatttatttgttacattttggtccctt 300  Q
    |||||||||| | |||||||||||||| |||||| || ||| ||||||||||||||    
T  9899560 ggcttaattactcatttggtcccttaacttattttttggtttcattttggtccctt 9899615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 300
Target Start/End: Original strand, 1292718 - 1292759
Alignment:
Q  259 tttggtcccttaagttatttatttgttacattttggtccctt 300  Q
    ||||||||||||| |||||| |||||| ||||||||||||||    
T  1292718 tttggtcccttaacttatttttttgtttcattttggtccctt 1292759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 5e-32; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 245 - 383
Target Start/End: Complemental strand, 23322434 - 23322305
Alignment:
Q  245 ggcttaattaatgatttggtcccttaagttatttatttgttacattttggtccctttgatcccataagttattaacgttacaatttggtctcttaaatta 344  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||| ||         ||||||||||||||||||||||||||| ||||| |||    
T  23322434 ggcttaattaatgatttggtcccttaagttatttgttggttacattttggttcc---------ataagttattaacgttacaatttggtcccttaagtta 23322344  T
Q  345 gtatctgttagccaaataaatccccaccgttagtctttt 383  Q
    |||| |||||||||||||||||| |||||| | ||||||    
T  23322343 gtatatgttagccaaataaatcctcaccgtcaatctttt 23322305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 307 - 383
Target Start/End: Original strand, 25088457 - 25088533
Alignment:
Q  307 cataagttattaacgttacaatttggtctcttaaattagtatctgttagccaaataaatccccaccgttagtctttt 383  Q
    ||||| |||||||||||||||||||||| ||||  |||||||||||||||||||||||||| ||||||| |||||||    
T  25088457 cataaattattaacgttacaatttggtcccttatgttagtatctgttagccaaataaatcctcaccgttggtctttt 25088533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 307 - 383
Target Start/End: Original strand, 25146426 - 25146502
Alignment:
Q  307 cataagttattaacgttacaatttggtctcttaaattagtatctgttagccaaataaatccccaccgttagtctttt 383  Q
    ||||| |||||||||||||||||||||| ||||  |||||||||||||||||||||||||| ||||||| |||||||    
T  25146426 cataaattattaacgttacaatttggtcccttatgttagtatctgttagccaaataaatcctcaccgttggtctttt 25146502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 245 - 367
Target Start/End: Complemental strand, 5841213 - 5841100
Alignment:
Q  245 ggcttaattaatgatttggtcccttaagttatttatttgttacattttggtccctttgatcccataagttattaacgttacaatttggtctcttaaatta 344  Q
    ||||||||||||||||||||| ||||| |||||| || ||||||||||||||||         |||| |||||||||||||||||||||   |||| |||    
T  5841213 ggcttaattaatgatttggtctcttaacttatttgttggttacattttggtccc---------ataaattattaacgttacaatttggttctttaagtta 5841123  T
Q  345 gtatctgttagccaaataaatcc 367  Q
    |||| ||||||||||||||||||    
T  5841122 gtatttgttagccaaataaatcc 5841100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 245 - 374
Target Start/End: Original strand, 34634068 - 34634188
Alignment:
Q  245 ggcttaattaatgatttggtcccttaagttatttatttgttacattttggtccctttgatcccataagttattaacgttacaatttggtctcttaaatta 344  Q
    ||||||||||||||| |||||| ||||||||||| || |||||| |||||||||         ||||||||||||||||||| |||||||  |||| |||    
T  34634068 ggcttaattaatgatgtggtcctttaagttatttgttggttacaatttggtccc---------ataagttattaacgttacattttggtccattaagtta 34634158  T
Q  345 gtatctgttagccaaataaatccccaccgt 374  Q
    |  |||||||| |||||||||||| |||||    
T  34634159 gactctgttagtcaaataaatccctaccgt 34634188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 245 - 367
Target Start/End: Original strand, 9379930 - 9380043
Alignment:
Q  245 ggcttaattaatgatttggtcccttaagttatttatttgttacattttggtccctttgatcccataagttattaacgttacaatttggtctcttaaatta 344  Q
    |||||||||||||| ||||||||||||||||||| || ||||||||||||         | ||| ||||||||||||||||  ||||||| ||||| |||    
T  9379930 ggcttaattaatgaattggtcccttaagttatttgttggttacattttgg---------ttccacaagttattaacgttacgttttggtcccttaactta 9380020  T
Q  345 gtatctgttagccaaataaatcc 367  Q
      || ||||||||||||||||||    
T  9380021 taatatgttagccaaataaatcc 9380043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 244 - 298
Target Start/End: Original strand, 43183229 - 43183283
Alignment:
Q  244 tggcttaattaatgatttggtcccttaagttatttatttgttacattttggtccc 298  Q
    ||||||||||||| ||||||||||||||||||||| || ||||||||||||||||    
T  43183229 tggcttaattaataatttggtcccttaagttatttgttggttacattttggtccc 43183283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 245 - 300
Target Start/End: Complemental strand, 15933663 - 15933608
Alignment:
Q  245 ggcttaattaatgatttggtcccttaagttatttatttgttacattttggtccctt 300  Q
    ||||||||| |||||||||||||||||||||||| || |||||||||| |||||||    
T  15933663 ggcttaattcatgatttggtcccttaagttatttgttggttacattttagtccctt 15933608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 321 - 391
Target Start/End: Complemental strand, 15933625 - 15933555
Alignment:
Q  321 gttacaatttggtctcttaaattagtatctgttagccaaataaatccccaccgttagtctttttccaaaac 391  Q
    |||||| ||| ||| ||||| |||||||||||||||||||||||||| | | ||||||||||| |||||||    
T  15933625 gttacattttagtcccttaagttagtatctgttagccaaataaatcctctctgttagtcttttgccaaaac 15933555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 245 - 347
Target Start/End: Original strand, 42792948 - 42793041
Alignment:
Q  245 ggcttaattaatgatttggtcccttaagttatttatttgttacattttggtccctttgatcccataagttattaacgttacaatttggtctcttaaatta 344  Q
    ||||||||||||||||||||| |||||||||||| || ||| ||||||||         |||||||| ||||||| |||||||||||||| ||||| |||    
T  42792948 ggcttaattaatgatttggtcgcttaagttatttgttggtttcattttgg---------tcccataaattattaatgttacaatttggtcccttaagtta 42793038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 130 - 244
Target Start/End: Complemental strand, 8342175 - 8342062
Alignment:
Q  130 agcatgaaaataacttgttcgaagaaaatttagaaactttgagtgtatggtatc----atgtaattccatcacaatataatttaaaatgtggtgacatgc 225  Q
    |||||||||||||||   || |||||||||||||||||||||| | |||||||     |||||||||||  ||||||||||| ||| |||||||    ||    
T  8342175 agcatgaaaataactacatcaaagaaaatttagaaactttgagggcatggtatatattatgtaattccactacaatataattgaaa-tgtggtg----gc 8342081  T
Q  226 atgcagctaaaaacaagat 244  Q
    |||||||||||||||||||    
T  8342080 atgcagctaaaaacaagat 8342062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 248 - 367
Target Start/End: Complemental strand, 1501164 - 1501054
Alignment:
Q  248 ttaattaatgatttggtcccttaagttatttatttgttacattttggtccctttgatcccataagttattaacgttacaatttggtctcttaaattagta 347  Q
    ||||||||| ||||| |||||||||||||||||| ||| ||||||||         |||||||| |||||||||||||| ||||||| ||||| |||       
T  1501164 ttaattaatcatttgatcccttaagttatttattggtttcattttgg---------tcccataaattattaacgttacattttggtcccttaagttatat 1501074  T
Q  348 tctgttagccaaataaatcc 367  Q
    || ||||| |||||||||||    
T  1501073 tccgttagtcaaataaatcc 1501054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 246 - 367
Target Start/End: Complemental strand, 9380788 - 9380676
Alignment:
Q  246 gcttaattaatgatttggtcccttaagttatttatttgttacattttggtccctttgatcccataagttattaacgttacaatttggtctcttaaattag 345  Q
    ||||||||||||| ||| ||||||||||||||| || |||||||         ||||||||||||||||||||| |||||  ||||||| ||| | |||     
T  9380788 gcttaattaatgaattgatcccttaagttatttgttggttacat---------tttgatcccataagttattaatgttacgttttggtcccttcacttat 9380698  T
Q  346 tatctgttagccaaataaatcc 367  Q
     || |||||| |||||||||||    
T  9380697 aatatgttagtcaaataaatcc 9380676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 243 - 298
Target Start/End: Complemental strand, 20244589 - 20244534
Alignment:
Q  243 atggcttaattaatgatttggtcccttaagttatttatttgttacattttggtccc 298  Q
    ||||||||||||||||||| ||  ||||| |||||| || ||||||||||||||||    
T  20244589 atggcttaattaatgattttgttacttaaattatttgttggttacattttggtccc 20244534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 300
Target Start/End: Complemental strand, 7278130 - 7278089
Alignment:
Q  259 tttggtcccttaagttatttatttgttacattttggtccctt 300  Q
    ||||||||||||| |||||| |||||| ||||||||||||||    
T  7278130 tttggtcccttaacttatttttttgtttcattttggtccctt 7278089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 292
Target Start/End: Original strand, 5840880 - 5840924
Alignment:
Q  248 ttaattaatgatttggtcccttaagttatttatttgttacatttt 292  Q
    |||||||||||| |||||||||||||||||| || |||| |||||    
T  5840880 ttaattaatgatgtggtcccttaagttatttgttggttatatttt 5840924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 245 - 391
Target Start/End: Complemental strand, 4265312 - 4265175
Alignment:
Q  245 ggcttaattaatgatttggtcccttaagttatttatttgttacattttggtccctttgatcccataagttattaacgttacaatttggtctcttaaatta 344  Q
    ||||||||||||||||||||||||||||||| || |  |||||||||||         ||||||||||||||||||||||||||||||||  |||| |||    
T  4265312 ggcttaattaatgatttggtcccttaagttagttgtcggttacattttg---------atcccataagttattaacgttacaatttggtccattaagtta 4265222  T
Q  345 gtatctgttagccaaataaatccccaccgttagtctttttccaaaac 391  Q
    ||||||||| ||||||||||||| ||| || |||||||| |||||||    
T  4265221 gtatctgtttgccaaataaatcctcactgtcagtcttttgccaaaac 4265175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 243 - 391
Target Start/End: Original strand, 8905638 - 8905776
Alignment:
Q  243 atggcttaattaatgatttggtcccttaagttatttatttgttacattttggtccctttgatcccataagttattaacgttacaatttggtctcttaaat 342  Q
    |||||||||| |||||||||||| |||||||||||| || ||||||||||||         || ||||||||||||| ||||||||||| || |  || |    
T  8905638 atggcttaatcaatgatttggtctcttaagttatttgttggttacattttgg---------tctcataagttattaatgttacaatttgatc-ccaaagt 8905727  T
Q  343 tagtatctgttagccaaataaatccccaccgttagtctttttccaaaac 391  Q
    |||||| |||||||||||||||||| ||||||  ||||||| |||||||    
T  8905728 tagtatttgttagccaaataaatcctcaccgtcggtcttttgccaaaac 8905776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 245 - 366
Target Start/End: Complemental strand, 18471842 - 18471730
Alignment:
Q  245 ggcttaattaatgatttggtcccttaagttatttatttgttacattttggtccctttgatcccataagttattaacgttacaatttggtctcttaaatta 344  Q
    |||||| ||||||||||||||||||||||||| | || ||||||||||||         || |||||||||||||| ||| | ||||||| ||||| |||    
T  18471842 ggcttagttaatgatttggtcccttaagttatctgttggttacattttgg---------tctcataagttattaacattatattttggtcccttaactta 18471752  T
Q  345 gtatctgttagccaaataaatc 366  Q
      ||||||||||||||||||||    
T  18471751 taatctgttagccaaataaatc 18471730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 247 - 296
Target Start/End: Original strand, 8328197 - 8328246
Alignment:
Q  247 cttaattaatgatttggtcccttaagttatttatttgttacattttggtc 296  Q
    |||||||||||| | |||||||||||||||||||| |||| |||||||||    
T  8328197 cttaattaatgaatcggtcccttaagttatttattagttagattttggtc 8328246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 300
Target Start/End: Original strand, 11687171 - 11687212
Alignment:
Q  259 tttggtcccttaagttatttatttgttacattttggtccctt 300  Q
    ||||||||||||| |||||| |||||| ||||||||||||||    
T  11687171 tttggtcccttaacttatttttttgtttcattttggtccctt 11687212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 294
Target Start/End: Original strand, 18470139 - 18470188
Alignment:
Q  245 ggcttaattaatgatttggtcccttaagttatttatttgttacattttgg 294  Q
    ||||||||||||||||| || |||||| |||||| || ||||||||||||    
T  18470139 ggcttaattaatgattttgtgccttaaattatttgttggttacattttgg 18470188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 300
Target Start/End: Original strand, 24417265 - 24417306
Alignment:
Q  259 tttggtcccttaagttatttatttgttacattttggtccctt 300  Q
    ||||||||||||| |||||| |||||| ||||||||||||||    
T  24417265 tttggtcccttaacttatttttttgtttcattttggtccctt 24417306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 296
Target Start/End: Complemental strand, 8342731 - 8342683
Alignment:
Q  248 ttaattaatgatttggtcccttaagttatttatttgttacattttggtc 296  Q
    ||||||||||| ||||||| ||||||||||| || |||||| |||||||    
T  8342731 ttaattaatgaattggtccattaagttattttttggttacactttggtc 8342683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 338
Target Start/End: Original strand, 25749363 - 25749395
Alignment:
Q  306 ccataagttattaacgttacaatttggtctctt 338  Q
    |||||||||||||||||||||||||||| ||||    
T  25749363 ccataagttattaacgttacaatttggtttctt 25749395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 248 - 391
Target Start/End: Complemental strand, 266953 - 266819
Alignment:
Q  248 ttaattaatgatttggtcccttaagttatttatttgttacattttggtccctttgatcccataagttattaacgttacaatttggtctcttaaattagta 347  Q
    ||||||||||||||||||| ||||||||||| || |||||||||||||| |         ||||||||||||| ||| ||||||||| ||||| ||||||    
T  266953 ttaattaatgatttggtcctttaagttatttgttggttacattttggtcac---------ataagttattaaccttataatttggtcccttaagttagta 266863  T
Q  348 tctgttagccaaataaatccccaccgttagtctttttccaaaac 391  Q
    |||||||||||||||||||  ||||||||  ||||| |||||||    
T  266862 tctgttagccaaataaatcttcaccgttaaccttttcccaaaac 266819  T

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Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 245 - 391
Target Start/End: Complemental strand, 37499508 - 37499371
Alignment:
Q  245 ggcttaattaatgatttggtcccttaagttatttatttgttacattttggtccctttgatcccataagttattaacgttacaatttggtctcttaaatta 344  Q
    ||||||||||||||||||  | |||||||||||| || |||||||||||||| |         |||||||||||| |||| ||||| ||||||||| |||    
T  37499508 ggcttaattaatgatttgacctcttaagttatttgttggttacattttggtctc---------ataagttattaatgttataatttcgtctcttaagtta 37499418  T
Q  345 gtatctgttagccaaataaatccccaccgttagtctttttccaaaac 391  Q
    ||||||||||||||||||||||   ||||| |||||||| |||||||    
T  37499417 gtatctgttagccaaataaatcattaccgtcagtcttttgccaaaac 37499371  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 244 - 367
Target Start/End: Original strand, 9114818 - 9114932
Alignment:
Q  244 tggcttaattaatgatttggtcccttaagttatttatttgttacattttggtccctttgatcccataagttattaacgttacaatttggtctcttaaatt 343  Q
    |||||||||||||||||| |||||||||||||||| || ||||||||||||         ||||||||||||||||||||||  ||||||| ||||| ||    
T  9114818 tggcttaattaatgattttgtcccttaagttatttgttggttacattttgg---------tcccataagttattaacgttacgttttggtcccttaattt 9114908  T
Q  344 agtatctgttagccaaataaatcc 367  Q
    |  ||  |||||||||||||||||    
T  9114909 ataattcgttagccaaataaatcc 9114932  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 244 - 298
Target Start/End: Original strand, 14903805 - 14903859
Alignment:
Q  244 tggcttaattaatgatttggtcccttaagttatttatttgttacattttggtccc 298  Q
    ||||||||||||||||||||||||||||||||||| || ||||||||||| ||||    
T  14903805 tggcttaattaatgatttggtcccttaagttatttgttggttacattttgatccc 14903859  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 245 - 298
Target Start/End: Complemental strand, 14904667 - 14904614
Alignment:
Q  245 ggcttaattaatgatttggtcccttaagttatttatttgttacattttggtccc 298  Q
    ||||||||||||||||| |||||||||||||||| || ||||||||||||||||    
T  14904667 ggcttaattaatgatttagtcccttaagttatttgttggttacattttggtccc 14904614  T

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Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 245 - 367
Target Start/End: Complemental strand, 17691007 - 17690894
Alignment:
Q  245 ggcttaattaatgatttggtcccttaagttatttatttgttacattttggtccctttgatcccataagttattaacgttacaatttggtctcttaaatta 344  Q
    |||||||||||||||||||||||||||||||||| || ||||  || |||         ||||||||||||||||||||||  ||||||| ||||| |||    
T  17691007 ggcttaattaatgatttggtcccttaagttatttgttggttatgttctgg---------tcccataagttattaacgttacgttttggtcccttaactta 17690917  T
Q  345 gtatctgttagccaaataaatcc 367  Q
       ||| ||||||||||||||||    
T  17690916 tattctattagccaaataaatcc 17690894  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 247 - 292
Target Start/End: Original strand, 37499178 - 37499223
Alignment:
Q  247 cttaattaatgatttggtcccttaagttatttatttgttacatttt 292  Q
    |||||||||||||||||||||||||||||||| ||  |||||||||    
T  37499178 cttaattaatgatttggtcccttaagttatttgttgcttacatttt 37499223  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 247 - 278
Target Start/End: Original strand, 17689738 - 17689769
Alignment:
Q  247 cttaattaatgatttggtcccttaagttattt 278  Q
    ||||||||||||||||||||||||||||||||    
T  17689738 cttaattaatgatttggtcccttaagttattt 17689769  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 300
Target Start/End: Complemental strand, 52051535 - 52051494
Alignment:
Q  259 tttggtcccttaagttatttatttgttacattttggtccctt 300  Q
    ||||||||||||| |||||| |||||| ||||||||||||||    
T  52051535 tttggtcccttaacttatttttttgtttcattttggtccctt 52051494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 300
Target Start/End: Original strand, 17738253 - 17738309
Alignment:
Q  244 tggcttaattaatgatttggtcccttaagttatttatttgttacattttggtccctt 300  Q
    ||||||||||| |  ||||||||||||| |||||| |||||| | ||||||||||||    
T  17738253 tggcttaattattcttttggtcccttaacttatttttttgtttcgttttggtccctt 17738309  T

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Target: scaffold0006 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 246 - 391
Target Start/End: Original strand, 93633 - 93768
Alignment:
Q  246 gcttaattaatgatttggtcccttaagttatttatttgttacattttggtccctttgatcccataagttattaacgttacaatttggtctcttaaattag 345  Q
    ||||||||||||||||| ||| ||||||||||| || ||||||||||||||||         |||| |||||||||||||||||| ||| ||||| |||     
T  93633 gcttaattaatgatttgatcc-ttaagttatttgttagttacattttggtccc---------ataaattattaacgttacaatttagtcccttaagttac 93722  T
Q  346 tatctgttagccaaataaatccccaccgttagtctttttccaaaac 391  Q
    ||| |||||||||||||||||  |||||| |||||||| |||||||    
T  93723 tatttgttagccaaataaatcttcaccgtgagtcttttgccaaaac 93768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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