View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13665_low_5 (Length: 322)

Name: NF13665_low_5
Description: NF13665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13665_low_5
NF13665_low_5
[»] chr3 (10 HSPs)
chr3 (1-303)||(2807069-2807371)
chr3 (2-302)||(2748798-2749098)
chr3 (5-238)||(2759078-2759314)
chr3 (5-238)||(2838638-2838877)
chr3 (1-302)||(2790167-2790471)
chr3 (5-258)||(2768913-2769169)
chr3 (5-302)||(2855848-2856148)
chr3 (1-237)||(2797226-2797465)
chr3 (5-302)||(5412707-5412986)
chr3 (5-237)||(2818422-2818657)
[»] scaffold0691 (1 HSPs)
scaffold0691 (1-302)||(6186-6490)


Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 2807371 - 2807069
Alignment:
Q  1 acctcccattcctaccaccgaaatcaccgtgcgctcagctacaccctccaataaccaaacagacatttcttctcttgggccttcaaatcctacaatttct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  2807371 acctcccattcctaccaccgaaatcaccgtgcgctcagctacaccctccaataaccaaacagacatttcttctcttgggaattcaaatcctacaatttct 2807272  T
Q  101 ctttcttcaataaaaagggaagacagtcgaggatcacgccatcttccattttctgtttctctagtgctgttgctgcttgatgatccttgttcatttgaaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||    
T  2807271 ctttcttcaataaaaagggaagacagtcgaggatcacgccatcttccattttctgtctctctagtgctgttgcggcttgatgatccttgttcatgtgaaa 2807172  T
Q  201 tttgtaagttatacctctcacttctttccttgattccgcaaaccgacaccttaatgtctcggatcttagatgctatatgatgacgaggaatcaaagtttt 300  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  2807171 tttgtaagttatacctctcacttctttccttgattccgcgaaccgacaccttaatgtctcggatcttagatgctatatgatgacggggaatcaaagtttt 2807072  T
Q  301 gac 303  Q
    |||    
T  2807071 gac 2807069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 2 - 302
Target Start/End: Complemental strand, 2749098 - 2748798
Alignment:
Q  2 cctcccattcctaccaccgaaatcaccgtgcgctcagctacaccctccaataaccaaacagacatttcttctcttgggccttcaaatcctacaatttctc 101  Q
    ||||||||||||||||| || |||||||||||||||||| |||| |||||||||||| |||||| ||||||| ||||| ||||||  || |||| ||||     
T  2749098 cctcccattcctaccacggatatcaccgtgcgctcagcttcaccatccaataaccaaccagacagttcttcttttgggacttcaataccaacaacttctg 2748999  T
Q  102 tttcttcaataaaaagggaagacagtcgaggatcacgccatcttccattttctgtttctctagtgctgttgctgcttgatgatccttgttcatttgaaat 201  Q
    |||||||||||||||| |||||||||||||||||| ||||| ||||||||||| | ||||   ||||  |||||||||| | ||||||||| | ||||||    
T  2748998 tttcttcaataaaaagagaagacagtcgaggatcatgccattttccattttctctctctcctatgctaatgctgcttgaagttccttgttcgtgtgaaat 2748899  T
Q  202 ttgtaagttatacctctcacttctttccttgattccgcaaaccgacaccttaatgtctcggatcttagatgctatatgatgacgaggaatcaaagttttg 301  Q
    ||| |||||||||||||||||||||||||||||||| | ||  || |  ||||||||  | || | |||||||||||||||||| |||||||||||||||    
T  2748898 ttgaaagttatacctctcacttctttccttgattccacgaattgataatttaatgtcctgaatttcagatgctatatgatgacggggaatcaaagttttg 2748799  T
Q  302 a 302  Q
    |    
T  2748798 a 2748798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 5 - 238
Target Start/End: Complemental strand, 2759314 - 2759078
Alignment:
Q  5 cccattcctaccaccgaaatcaccgtgcgctcagctacaccctccaataaccaaacagacatttcttctcttgggccttcaaatcctacaatttctcttt 104  Q
    |||||||||||||| |||||||| ||||| ||||||  |||||||||||||||| || | | ||||||| |||||||||||||||||||||||||| |||    
T  2759314 cccattcctaccactgaaatcactgtgcgttcagctgaaccctccaataaccaaccatatagttcttcttttgggccttcaaatcctacaatttctgttt 2759215  T
Q  105 cttcaataaaaagggaagacagtcgaggatcacgccatcttccattttctgt---ttctctagtgctgttgctgcttgatgatccttgttcatttgaaat 201  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||| |   |||  ||||| || ||||| |||| ||||||||||||||||||||    
T  2759214 cttcaatgaaaagggaagacagtcgaggatcacgccatcttccattttctttctcttcggtagtgttgctgctgtttgaggatccttgttcatttgaaat 2759115  T
Q  202 ttgtaagttatacctctcacttctttccttgattccg 238  Q
    ||| |||||||||||| | ||||||||||||||||||    
T  2759114 ttgaaagttatacctcacgcttctttccttgattccg 2759078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 5 - 238
Target Start/End: Original strand, 2838638 - 2838877
Alignment:
Q  5 cccattcctaccaccgaaatcaccgtgcgctcagctacaccctccaataaccaaacagacatttcttctcttgggccttcaaatcctacaatttctcttt 104  Q
    |||||||||||||| || || || |||||||||||| ||||||||||||||||| || | |||||||||||||||||||||||||||||||||||| |||    
T  2838638 cccattcctaccactgatatgactgtgcgctcagctgcaccctccaataaccaaccatatatttcttctcttgggccttcaaatcctacaatttctgttt 2838737  T
Q  105 cttcaataaaaagggaagacagtcgaggatcacgccatcttccattttctgtttctctag---tgctgt---tgctgcttgatgatccttgttcatttga 198  Q
    ||||||| |||||||||||||||||||| ||  ||||||||||||||||||  |||| ||   ||||||   |||||||||| |||||||||||||||||    
T  2838738 cttcaatgaaaagggaagacagtcgagggtcgtgccatcttccattttctgcctctccaggactgctgttgctgctgcttgaggatccttgttcatttga 2838837  T
Q  199 aatttgtaagttatacctctcacttctttccttgattccg 238  Q
    |||||| |||||||||||||| ||||||| ||||||||||    
T  2838838 aatttgaaagttatacctctcgcttcttttcttgattccg 2838877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 2790471 - 2790167
Alignment:
Q  1 acctcccattcctaccaccgaaatcaccgtgcgctcagctacaccctccaataaccaaacagacatttcttctcttgggccttcaaatcctacaatttct 100  Q
    |||||||||||| ||||| |||||||| ||||||||||||   ||||||||||||||| |||||| |||||| || |||||||||||||| |||||| |     
T  2790471 acctcccattccaaccactgaaatcactgtgcgctcagctgtgccctccaataaccaaccagacaattcttccctcgggccttcaaatccgacaattgca 2790372  T
Q  101 ctttcttcaataaaaagggaagacagtcgaggatcacgccatcttccattttctgtttctctagtgctgttgc---tgcttgatgatccttgttcatttg 197  Q
     |||||||||| |||||||||||||  ||||||||| ||||||||| ||| || || |||||| |||||||||   |||||||||||||| ||   | ||    
T  2790371 gtttcttcaatgaaaagggaagacaaccgaggatcatgccatcttctattgtccgtctctctactgctgttgctgctgcttgatgatcctggtgtctgtg 2790272  T
Q  198 aaatttgtaagttatacctctcacttctttccttgattccgcaaaccgacaccttaatgtctcggatcttagatgctatatgatgacgaggaatcaaagt 297  Q
    ||||||| |||||||||||||||||||||||||||||||| | ||  || | |||||||| |   |||| ||||||||| |||||| | |||||||||||    
T  2790271 aaatttgaaagttatacctctcacttctttccttgattccacgaattgatatcttaatgtttttaatctcagatgctatctgatgatggggaatcaaagt 2790172  T
Q  298 tttga 302  Q
    |||||    
T  2790171 tttga 2790167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 5 - 258
Target Start/End: Complemental strand, 2769169 - 2768913
Alignment:
Q  5 cccattcctaccaccgaaatcaccgtgcgctcagctacaccctccaataaccaaacagacatttcttctcttgggccttcaaatcctacaatttctcttt 104  Q
    |||||||||||||| || ||||| ||||||| |||| ||||||||||||||||| || | | |||||||||||||||||| ||||||||||||||| |||    
T  2769169 cccattcctaccactgatatcactgtgcgcttagctgcaccctccaataaccaaccaaataattcttctcttgggccttccaatcctacaatttctgttt 2769070  T
Q  105 cttcaataaaaagggaagacagtcgaggatcacgccatcttccattttctgtttctctagtgctgt---tgctgcttgatgatccttgttcatttgaaat 201  Q
    |||||||||| ||||||||||  ||||||||||||||||||||| ||||||  |||| | | ||||   ||||| |||| ||||||||||||| |||| |    
T  2769069 cttcaataaagagggaagacatccgaggatcacgccatcttccactttctgactctccactactgttcctgctgtttgaggatccttgttcatgtgaagt 2768970  T
Q  202 ttgtaagttatacctctcacttctttccttgattccgcaaaccgacaccttaatgtc 258  Q
    ||| ||| |||||||||| ||||||||||||||||| | ||  |||| |||||||||    
T  2768969 ttgaaagctatacctctcgcttctttccttgattccacgaattgacaacttaatgtc 2768913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 5 - 302
Target Start/End: Original strand, 2855848 - 2856148
Alignment:
Q  5 cccattcctaccaccgaaatcaccgtgcgctcagctacaccctccaataaccaaacagacatttcttctcttgggccttcaaatcctacaatttctcttt 104  Q
    |||||||| ||||| ||||||||  ||||||||| || ||| |||||||||||| |||||| ||||||| ||||||||||||  ||||||| |||| |||    
T  2855848 cccattcccaccactgaaatcactttgcgctcagatataccttccaataaccaaccagacaattcttcttttgggccttcaatgcctacaacttctgttt 2855947  T
Q  105 cttcaataaaaagggaagacagtcgaggatcacgccatcttccattttctgtttctctagtgctgttgct---gcttgatgatccttgttcatttgaaat 201  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| | ||| ||| ||   |||||| |||||||| || | ||||||    
T  2855948 cttcaatgaaaagggaagacagtcgaggatcacgccatcttccattttctgtctctccactgcggtttctttggcttgaggatccttgctcgtgtgaaat 2856047  T
Q  202 ttgtaagttatacctctcacttctttccttgattccgcaaaccgacaccttaatgtctcggatcttagatgctatatgatgacgaggaatcaaagttttg 301  Q
    ||| |||||||||||||  ||||||||||||||||| | ||  |||| ||| |||||  | ||||  ||||| || | |||| | |||||||||||||||    
T  2856048 ttgaaagttatacctctggcttctttccttgattccacgaattgacaacttgatgtcctgaatctctgatgcaattttatgatggggaatcaaagttttg 2856147  T
Q  302 a 302  Q
    |    
T  2856148 a 2856148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 2797465 - 2797226
Alignment:
Q  1 acctcccattcctaccaccgaaatcaccgtgcgctcagctacaccctccaataaccaaacagacatttcttctcttgggccttcaaatcctacaatttct 100  Q
    |||||||||||| ||||| |||||||| ||||||||||||   ||||| | ||||||| |||||| |||||| || |||||||||||||| |||||| |     
T  2797465 acctcccattccaaccactgaaatcactgtgcgctcagctgtgccctctagtaaccaaccagacaattcttccctcgggccttcaaatccgacaattgca 2797366  T
Q  101 ctttcttcaataaaaagggaagacagtcgaggatcacgccatcttccattttctgtttctctagtgc---tgttgctgcttgatgatccttgttcatttg 197  Q
     |||||||||||||||||||||||||||||||||||| |||||||| ||| || || |||||| |||   |||||||||||||||||||| ||   | ||    
T  2797365 gtttcttcaataaaaagggaagacagtcgaggatcacaccatcttctattatccgtctctctactgctgttgttgctgcttgatgatcctggtgtctgtg 2797266  T
Q  198 aaatttgtaagttatacctctcacttctttccttgattcc 237  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  2797265 aaatttgaaagttatacctctcacttctttccttgattcc 2797226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 5 - 302
Target Start/End: Complemental strand, 5412986 - 5412707
Alignment:
Q  5 cccattcctaccaccgaaatcaccgtgcgctcagctacaccctccaataaccaaacagacatttcttctcttgggccttcaaatcctacaatttctcttt 104  Q
    |||||||||||||| || || || || || || ||| |||| |||||||||||| |||||| ||||||| |||| ||||||| |||||||| |||| |||    
T  5412986 cccattcctaccactgatatgactgtacgttccgctgcaccatccaataaccaaccagacaattcttcttttggaccttcaattcctacaacttctgttt 5412887  T
Q  105 cttcaataaaaagggaagacagtcgaggatcacgccatcttccattttctgtttctctagtgctgttgctgcttgatgatccttgttcatttgaaatttg 204  Q
    ||  ||| || |||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||                  ||||||||||    
T  5412886 ctgtaatgaatagggaagacagtcgaggatctcgccatcttccattttctgtctctctactgctgttgctgc------------------ttgaaatttg 5412805  T
Q  205 taagttatacctctcacttctttccttgattccgcaaaccgacaccttaatgtctcggatcttagatgctatatgatgacgaggaatcaaagttttga 302  Q
     |||||||||||||||||||||||||||||||| | ||  |||| |||||||||  | |||| ||||||||| |||||| | ||||||||||||||||    
T  5412804 aaagttatacctctcacttctttccttgattccacgaattgacaacttaatgtcctgaatctcagatgctatctgatgatggggaatcaaagttttga 5412707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 5 - 237
Target Start/End: Complemental strand, 2818657 - 2818422
Alignment:
Q  5 cccattcctaccaccgaaatcaccgtgcgctcagctacaccctccaataaccaaacagacatttcttctcttgggccttcaaatcctacaatttctcttt 104  Q
    |||||||||||||| || ||||| |||||||| ||| ||||||||||||||||| || | | ||||||||| ||||||||||||||||| |||||| |||    
T  2818657 cccattcctaccactgatatcactgtgcgctcggctgcaccctccaataaccaaccatatagttcttctctcgggccttcaaatcctacgatttctgttt 2818558  T
Q  105 cttcaataaaaagggaagacagtcgaggatcacgccatcttccattttctgtttctctagtgctgttgct---gcttgatgatccttgttcatttgaaat 201  Q
    ||||||| ||||| ||||||||||||||||||||||||| |||  | ||||  |||| |   | ||||||   ||  || |||||||||||||  |||||    
T  2818557 cttcaatgaaaagagaagacagtcgaggatcacgccatcctcctgtgtctgactctccacatccgttgctttggcacgaggatccttgttcatgcgaaat 2818458  T
Q  202 ttgtaagttatacctctcacttctttccttgattcc 237  Q
    ||| |||||||||||||| |||||||||||||||||    
T  2818457 ttggaagttatacctctcgcttctttccttgattcc 2818422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0691 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 6186 - 6490
Alignment:
Q  1 acctcccattcctaccaccgaaatcaccgtgcgctcagctacaccctccaataaccaaacagacatttcttctcttgggccttcaaatcctacaatttct 100  Q
    |||||||||||||||||| ||||| || ||||||||||||  || ||||||||||||| || | | ||| |||||||||||||| |||||||||| |||     
T  6186 acctcccattcctaccactgaaattacggtgcgctcagctggactctccaataaccaaccatataattcctctcttgggccttcgaatcctacaacttca 6285  T
Q  101 ctttcttcaataaaaagggaagacagtcgaggatcacgccatcttccattttctgtttctctagtgctgttgctg---cttgatgatccttgttcatttg 197  Q
     |||||||||||||||||| ||| | |||||||||||||||||||||||||||||  ||||  |||||| |||||   |||||||||||  |||||| |     
T  6286 gtttcttcaataaaaagggcagataatcgaggatcacgccatcttccattttctgcctctcctgtgctgctgctgacacttgatgatccaggttcatgta 6385  T
Q  198 aaatttgtaagttatacctctcacttctttccttgattccgcaaaccgacaccttaatgtctcggatcttagatgctatatgatgacgaggaatcaaagt 297  Q
    ||||||| ||||||||||| |||||||| ||||||||||| | ||  |||| ||| |||||  | |||| ||||||||| |||||  ||| |||||||||    
T  6386 aaatttgaaagttatacctttcacttctgtccttgattccacgaattgacagctttatgtcctgaatctcagatgctatctgatgctgagaaatcaaagt 6485  T
Q  298 tttga 302  Q
    |||||    
T  6486 tttga 6490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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