View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13665_low_6 (Length: 317)

Name: NF13665_low_6
Description: NF13665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13665_low_6
NF13665_low_6
[»] chr3 (21 HSPs)
chr3 (27-123)||(3171492-3171588)
chr3 (27-123)||(27865036-27865131)
chr3 (26-123)||(24107387-24107484)
chr3 (37-123)||(38758611-38758697)
chr3 (42-123)||(24107154-24107235)
chr3 (47-123)||(19860494-19860570)
chr3 (47-123)||(27864802-27864878)
chr3 (27-123)||(54446023-54446119)
chr3 (62-123)||(31596759-31596820)
chr3 (47-115)||(21792228-21792296)
chr3 (47-123)||(38758864-38758940)
chr3 (62-123)||(16907933-16907994)
chr3 (65-123)||(18025883-18025941)
chr3 (62-123)||(46684101-46684162)
chr3 (62-123)||(46685537-46685598)
chr3 (79-123)||(11422382-11422426)
chr3 (69-123)||(3171765-3171819)
chr3 (47-124)||(54446272-54446350)
chr3 (62-102)||(18026123-18026163)
chr3 (47-106)||(21792374-21792433)
chr3 (50-103)||(14812450-14812503)
[»] chr8 (9 HSPs)
chr8 (27-123)||(30905963-30906059)
chr8 (62-123)||(32539457-32539518)
chr8 (55-123)||(10536792-10536860)
chr8 (62-123)||(10536003-10536064)
chr8 (50-123)||(18203316-18203389)
chr8 (49-123)||(18202776-18202850)
chr8 (261-298)||(4442553-4442590)
chr8 (47-123)||(30905399-30905475)
chr8 (160-225)||(29584975-29585041)
[»] chr2 (12 HSPs)
chr2 (27-123)||(42963005-42963101)
chr2 (47-123)||(18171337-18171413)
chr2 (38-122)||(38694892-38694976)
chr2 (47-123)||(38695145-38695221)
chr2 (62-123)||(14159209-14159270)
chr2 (47-123)||(18166636-18166712)
chr2 (62-123)||(4410647-4410708)
chr2 (62-123)||(4733307-4733368)
chr2 (62-123)||(14160428-14160489)
chr2 (62-123)||(4734224-4734285)
chr2 (79-123)||(42962771-42962815)
chr2 (62-122)||(4409164-4409224)
[»] chr4 (31 HSPs)
chr4 (29-123)||(10286413-10286507)
chr4 (37-122)||(52677799-52677884)
chr4 (47-123)||(9268026-9268102)
chr4 (27-123)||(10468483-10468579)
chr4 (38-122)||(49028267-49028351)
chr4 (47-123)||(49028520-49028596)
chr4 (49-123)||(45667234-45667308)
chr4 (34-123)||(12585161-12585250)
chr4 (47-123)||(3990932-3991008)
chr4 (47-123)||(10468737-10468813)
chr4 (47-123)||(52677555-52677631)
chr4 (49-123)||(622316-622390)
chr4 (62-123)||(9450930-9450991)
chr4 (50-123)||(25225793-25225866)
chr4 (38-123)||(36098748-36098833)
chr4 (47-123)||(12585415-12585491)
chr4 (55-123)||(28450753-28450821)
chr4 (74-124)||(21038396-21038446)
chr4 (62-123)||(21325702-21325763)
chr4 (28-108)||(16067562-16067642)
chr4 (53-123)||(17931291-17931361)
chr4 (53-123)||(17932138-17932208)
chr4 (62-123)||(4439045-4439106)
chr4 (62-123)||(9449718-9449779)
chr4 (62-123)||(28451548-28451609)
chr4 (49-124)||(10202680-10202755)
chr4 (75-113)||(3990698-3990736)
chr4 (62-123)||(4437683-4437744)
chr4 (66-123)||(12315858-12315915)
chr4 (47-104)||(16067346-16067403)
chr4 (90-123)||(45667369-45667402)
[»] chr5 (17 HSPs)
chr5 (27-123)||(23322101-23322197)
chr5 (27-124)||(5840879-5840976)
chr5 (47-123)||(23322355-23322431)
chr5 (47-123)||(34634071-34634147)
chr5 (47-123)||(42792951-42793027)
chr5 (47-123)||(5841134-5841210)
chr5 (47-123)||(43183233-43183309)
chr5 (73-123)||(15933610-15933660)
chr5 (50-123)||(15933359-15933432)
chr5 (34-123)||(25089034-25089123)
chr5 (34-123)||(25147003-25147092)
chr5 (55-123)||(9380718-9380786)
chr5 (62-123)||(9379933-9379994)
chr5 (47-110)||(25088420-25088483)
chr5 (47-110)||(25146389-25146452)
chr5 (26-124)||(1501068-1501165)
chr5 (62-123)||(20244523-20244584)
[»] chr6 (8 HSPs)
chr6 (27-123)||(3658955-3659051)
chr6 (62-123)||(3659223-3659284)
chr6 (74-123)||(8287449-8287498)
chr6 (47-123)||(5367672-5367747)
chr6 (47-123)||(28944248-28944324)
chr6 (73-123)||(8286791-8286841)
chr6 (82-123)||(5367410-5367451)
chr6 (34-90)||(5367451-5367507)
[»] scaffold0069 (2 HSPs)
scaffold0069 (47-123)||(19898-19974)
scaffold0069 (47-123)||(20156-20231)
[»] scaffold0008 (2 HSPs)
scaffold0008 (47-115)||(266632-266700)
scaffold0008 (62-124)||(266892-266954)
[»] chr7 (8 HSPs)
chr7 (49-123)||(8905643-8905717)
chr7 (47-123)||(4265233-4265309)
chr7 (27-123)||(8905876-8905972)
chr7 (38-123)||(4264979-4265064)
chr7 (62-123)||(25749402-25749463)
chr7 (62-119)||(18471778-18471835)
chr7 (47-123)||(25749315-25749390)
chr7 (56-123)||(18470142-18470209)
[»] chr1 (9 HSPs)
chr1 (62-123)||(9114822-9114883)
chr1 (62-123)||(14903809-14903870)
chr1 (62-123)||(14904603-14904664)
chr1 (49-123)||(30335231-30335304)
chr1 (62-123)||(17690943-17691004)
chr1 (78-123)||(37499179-37499224)
chr1 (50-123)||(37499432-37499505)
chr1 (84-123)||(17689739-17689778)
chr1 (62-103)||(9116069-9116110)
[»] scaffold0006 (2 HSPs)
scaffold0006 (49-113)||(93890-93954)
scaffold0006 (50-123)||(93635-93707)


Alignment Details
Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 27 - 123
Target Start/End: Complemental strand, 3171588 - 3171492
Alignment:
Q  27 acggaatatgacttaaagtcaccaaattgtaacagtaataactaatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaa 123  Q
    |||||| || ||||||||  |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3171588 acggaagataacttaaagggaccaaattgtaacattaataacttatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaa 3171492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 27 - 123
Target Start/End: Original strand, 27865036 - 27865131
Alignment:
Q  27 acggaatatgacttaaagtcaccaaattgtaacagtaataactaatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaa 123  Q
    |||||| |||||||||||  |||||||||||||  |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27865036 acggaagatgacttaaagg-accaaattgtaacgttaataacttatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaa 27865131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 26 - 123
Target Start/End: Original strand, 24107387 - 24107484
Alignment:
Q  26 aacggaatatgacttaaagtcaccaaattgtaacagtaataactaatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaa 123  Q
    ||||||| ||||||||| |  |||||||||||||  |||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  24107387 aacggaagatgacttaacgggaccaaattgtaacgttaataacttatgggactaaaatgtaaccaacaattaacttaatggaccacatcattaattaa 24107484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 37 - 123
Target Start/End: Complemental strand, 38758697 - 38758611
Alignment:
Q  37 acttaaagtcaccaaattgtaacagtaataactaatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaa 123  Q
    ||||||||  || ||||||||||  |||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||    
T  38758697 acttaaagggactaaattgtaacgttaataacttatgggactaaaatgtaaccaacaaataacttaagggacaacatcactaattaa 38758611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 42 - 123
Target Start/End: Complemental strand, 24107235 - 24107154
Alignment:
Q  42 aagtcaccaaattgtaacagtaataactaatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaa 123  Q
    |||| |||||||||||||  |||||||| ||||||| |||||||||||||||||||||| ||||||||| ||||||||||||    
T  24107235 aagtgaccaaattgtaacgttaataacttatgggaccaaaatgtaaccaacaaataactcaagggaccaaatcattaattaa 24107154  T

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Target: chr3; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 47 - 123
Target Start/End: Complemental strand, 19860570 - 19860494
Alignment:
Q  47 accaaattgtaacagtaataactaatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaa 123  Q
    |||||||||||||  |||||||| ||||||||||||||||||||| |||||||||||  ||||||||||||||||||    
T  19860570 accaaattgtaacgttaataacttatgggactaaaatgtaaccaataaataacttaatagaccacatcattaattaa 19860494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 47 - 123
Target Start/End: Complemental strand, 27864878 - 27864802
Alignment:
Q  47 accaaattgtaacagtaataactaatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaa 123  Q
    |||||||||||||  |||||||| ||||||| |||||||||||||||||||||||| ||||||| ||||||||||||    
T  27864878 accaaattgtaacgttaataacttatgggaccaaaatgtaaccaacaaataacttacgggaccaaatcattaattaa 27864802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 27 - 123
Target Start/End: Complemental strand, 54446119 - 54446023
Alignment:
Q  27 acggaatatgacttaaagtcaccaaattgtaacagtaataactaatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaa 123  Q
    |||||| |||||||||||  |||||||||||||  |||||||| || ||| |||||||||| ||||||||||||| || ||||||||||||||||||    
T  54446119 acggaagatgacttaaagggaccaaattgtaacgttaataacttataggattaaaatgtaatcaacaaataactttagagaccacatcattaattaa 54446023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 62 - 123
Target Start/End: Original strand, 31596759 - 31596820
Alignment:
Q  62 taataactaatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaa 123  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||    
T  31596759 taataacttatgggaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaa 31596820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 47 - 115
Target Start/End: Complemental strand, 21792296 - 21792228
Alignment:
Q  47 accaaattgtaacagtaataactaatgggactaaaatgtaaccaacaaataacttaagggaccacatca 115  Q
    |||||||||||||  |||||||| |||||||||||||||||||||| ||||| ||||||||||||||||    
T  21792296 accaaattgtaacgttaataacttatgggactaaaatgtaaccaaccaataaattaagggaccacatca 21792228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 47 - 123
Target Start/End: Original strand, 38758864 - 38758940
Alignment:
Q  47 accaaattgtaacagtaataactaatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaa 123  Q
    |||||||| ||||  | |||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||    
T  38758864 accaaattataacgttgataacttatgggaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaa 38758940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 62 - 123
Target Start/End: Complemental strand, 16907994 - 16907933
Alignment:
Q  62 taataactaatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaa 123  Q
    |||||||| ||||||| |||| ||||||||||||||||||||||||||| ||||||||||||    
T  16907994 taataacttatgggaccaaaacgtaaccaacaaataacttaagggaccaaatcattaattaa 16907933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 65 - 123
Target Start/End: Complemental strand, 18025941 - 18025883
Alignment:
Q  65 taactaatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaa 123  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||| | ||||||||||    
T  18025941 taacttatgggaccaaaatgtaaccaacaaataacttaagggaccaaagcattaattaa 18025883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 62 - 123
Target Start/End: Complemental strand, 46684162 - 46684101
Alignment:
Q  62 taataactaatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaa 123  Q
    |||||||| ||||||  |||||||||||||||||||||||||| ||||| ||||||||||||    
T  46684162 taataacttatgggatcaaaatgtaaccaacaaataacttaagcgaccaaatcattaattaa 46684101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 62 - 123
Target Start/End: Original strand, 46685537 - 46685598
Alignment:
Q  62 taataactaatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaa 123  Q
    |||||||| ||||||| ||||||||||||| |||||| ||||||||||| ||||||||||||    
T  46685537 taataacttatgggaccaaaatgtaaccaataaataatttaagggaccaaatcattaattaa 46685598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 79 - 123
Target Start/End: Complemental strand, 11422426 - 11422382
Alignment:
Q  79 aaaatgtaaccaacaaataacttaagggaccacatcattaattaa 123  Q
    |||||||||||||||||||||||||||||||| ||||||||||||    
T  11422426 aaaatgtaaccaacaaataacttaagggaccaaatcattaattaa 11422382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 69 - 123
Target Start/End: Original strand, 3171765 - 3171819
Alignment:
Q  69 taatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaa 123  Q
    ||||||||  ||||||||||| |||||||||||||||||||| ||||||||||||    
T  3171765 taatgggatgaaaatgtaaccgacaaataacttaagggaccaaatcattaattaa 3171819  T

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Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 47 - 124
Target Start/End: Original strand, 54446272 - 54446350
Alignment:
Q  47 accaaattgtaacagtaataactaatgggactaaaa-tgtaaccaacaaataacttaagggaccacatcattaattaaa 124  Q
    ||||||||||||   |||||||| || |||| |||| |||||| ||||||||||||||||||||| |||||||||||||    
T  54446272 accaaattgtaatgttaataacttataggaccaaaaatgtaactaacaaataacttaagggaccaaatcattaattaaa 54446350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 62 - 102
Target Start/End: Original strand, 18026123 - 18026163
Alignment:
Q  62 taataactaatgggactaaaatgtaaccaacaaataactta 102  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  18026123 taataacttatgggactaaaatgtaaccaacaaataactta 18026163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 47 - 106
Target Start/End: Original strand, 21792374 - 21792433
Alignment:
Q  47 accaaattgtaacagtaataactaatgggactaaaatgtaaccaacaaataacttaaggg 106  Q
    |||||||||||||  |||||||| |  |||| ||||||||| ||||||||||||||||||    
T  21792374 accaaattgtaacgttaataacttagaggaccaaaatgtaaacaacaaataacttaaggg 21792433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 103
Target Start/End: Complemental strand, 14812503 - 14812450
Alignment:
Q  50 aaattgtaacagtaataactaatgggactaaaatgtaaccaacaaataacttaa 103  Q
    ||||||||||  |||||||| ||||||| |||||||||| || |||||||||||    
T  14812503 aaattgtaacgttaataacttatgggaccaaaatgtaactaaaaaataacttaa 14812450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 6e-31; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 27 - 123
Target Start/End: Original strand, 30905963 - 30906059
Alignment:
Q  27 acggaatatgacttaaagtcaccaaattgtaacagtaataactaatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaa 123  Q
    |||||| |||||||||||  |||||||||||||  |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  30905963 acggaagatgacttaaagggaccaaattgtaacgttaataacttatgggactaaaatgtaaccaacaaataacttaagagaccacatcattaattaa 30906059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 62 - 123
Target Start/End: Original strand, 32539457 - 32539518
Alignment:
Q  62 taataactaatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaa 123  Q
    |||||||| ||| || ||||||||||||||||||||||||||||||||| ||||||||||||    
T  32539457 taataacttatgagattaaaatgtaaccaacaaataacttaagggaccaaatcattaattaa 32539518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 55 - 123
Target Start/End: Original strand, 10536792 - 10536860
Alignment:
Q  55 gtaacagtaataactaatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaa 123  Q
    |||||| |||||||| ||||||  |||||||||||||||||||| ||||||||||| ||||||||||||    
T  10536792 gtaacattaataacttatgggatcaaaatgtaaccaacaaataatttaagggaccaaatcattaattaa 10536860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 62 - 123
Target Start/End: Complemental strand, 10536064 - 10536003
Alignment:
Q  62 taataactaatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaa 123  Q
    ||||| || ||||||| |||||||||||||||||||||||||||||| | ||||||||||||    
T  10536064 taatatcttatgggaccaaaatgtaaccaacaaataacttaagggactaaatcattaattaa 10536003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 50 - 123
Target Start/End: Original strand, 18203316 - 18203389
Alignment:
Q  50 aaattgtaacagtaataactaatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaa 123  Q
    ||||||||||  |||||||| |||| || ||||| ||||||| |||||||||||||||||| ||||||||||||    
T  18203316 aaattgtaacgttaataacttatggaaccaaaatataaccaataaataacttaagggaccaaatcattaattaa 18203389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 49 - 123
Target Start/End: Complemental strand, 18202850 - 18202776
Alignment:
Q  49 caaattgtaacagtaataactaatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaa 123  Q
    |||||||||||| |||||||| ||| ||| ||||||||| |||||||||||||||  ||| |||| |||||||||    
T  18202850 caaattgtaacattaataacttatgagacgaaaatgtaatcaacaaataacttaatagactacattattaattaa 18202776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 261 - 298
Target Start/End: Complemental strand, 4442590 - 4442553
Alignment:
Q  261 cagtcaaatgtaagctgacacattcttgaggcccttgg 298  Q
    ||||||||||||||||||||||||||||||||||||||    
T  4442590 cagtcaaatgtaagctgacacattcttgaggcccttgg 4442553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 47 - 123
Target Start/End: Complemental strand, 30905475 - 30905399
Alignment:
Q  47 accaaattgtaacagtaataactaatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaa 123  Q
    |||||||||||||  |||||| | || | | |||||| |||||||||||||| ||||||||||| ||||||||||||    
T  30905475 accaaattgtaacgttaataagttatagaattaaaatataaccaacaaataatttaagggaccaaatcattaattaa 30905399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 225
Target Start/End: Original strand, 29584975 - 29585041
Alignment:
Q  160 aacccaatgttcgcaatctttgatttgatgc-gtactaagacagagagaatggatcaagggtgagag 225  Q
    ||||||||||| |  || ||| ||||||||| |||||||||||||||||||||||  ||||||||||    
T  29584975 aacccaatgttagtcatttttaatttgatgcagtactaagacagagagaatggatttagggtgagag 29585041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 6e-31; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 27 - 123
Target Start/End: Original strand, 42963005 - 42963101
Alignment:
Q  27 acggaatatgacttaaagtcaccaaattgtaacagtaataactaatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaa 123  Q
    |||||| ||||||| ||| ||||||||||||||  |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  42963005 acggaagatgacttgaaggcaccaaattgtaacgttaataacttatgagactaaaatgtaaccaacaaataacttaagggaccacatcattaattaa 42963101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 47 - 123
Target Start/End: Original strand, 18171337 - 18171413
Alignment:
Q  47 accaaattgtaacagtaataactaatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaa 123  Q
    ||||||||||||   |||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  18171337 accaaattgtaattttaataacttatgggactaaaatgtaaccaacaaataatttaagggaccatatcattaattaa 18171413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 38 - 122
Target Start/End: Complemental strand, 38694976 - 38694892
Alignment:
Q  38 cttaaagtcaccaaattgtaacagtaataactaatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaatta 122  Q
    |||||||  ||||||| |||||  |||||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  38694976 cttaaagggaccaaatggtaacgttaataatttatgggactaaaatgtaaccaacaaataacttaagggaccacatcatcaatta 38694892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 47 - 123
Target Start/End: Original strand, 38695145 - 38695221
Alignment:
Q  47 accaaattgtaacagtaataactaatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaa 123  Q
    |||||||||||||  |||||| | ||||||| ||||||||||||| |||||||||||||||||| ||||||||||||    
T  38695145 accaaattgtaacgttaataatttatgggaccaaaatgtaaccaataaataacttaagggaccaaatcattaattaa 38695221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 62 - 123
Target Start/End: Complemental strand, 14159270 - 14159209
Alignment:
Q  62 taataactaatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaa 123  Q
    |||||||| ||||||| |||| ||||||||||||||||||||||||||| ||||||||||||    
T  14159270 taataacttatgggaccaaaacgtaaccaacaaataacttaagggaccaaatcattaattaa 14159209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 47 - 123
Target Start/End: Complemental strand, 18166712 - 18166636
Alignment:
Q  47 accaaattgtaacagtaataactaatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaa 123  Q
    |||||||||||||  |||||||| ||| ||  |||||||||||||||||||| ||||||||||| ||||||||||||    
T  18166712 accaaattgtaacgttaataacttatgagatcaaaatgtaaccaacaaataatttaagggaccaaatcattaattaa 18166636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 62 - 123
Target Start/End: Original strand, 4410647 - 4410708
Alignment:
Q  62 taataactaatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaa 123  Q
    |||||||| | ||||| ||| |||||||||||||||||||||||||||| ||||||||||||    
T  4410647 taataacttacgggaccaaattgtaaccaacaaataacttaagggaccaaatcattaattaa 4410708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 62 - 123
Target Start/End: Complemental strand, 4733368 - 4733307
Alignment:
Q  62 taataactaatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaa 123  Q
    |||||||| ||||||| |||||||||||||||||||| |||||||| || ||||||||||||    
T  4733368 taataacttatgggaccaaaatgtaaccaacaaataatttaagggatcaaatcattaattaa 4733307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 62 - 123
Target Start/End: Original strand, 14160428 - 14160489
Alignment:
Q  62 taataactaatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaa 123  Q
    |||||||| ||||||| |||| |||||||||||||||||||| |||||| ||||||||||||    
T  14160428 taataacttatgggaccaaaacgtaaccaacaaataacttaatggaccaaatcattaattaa 14160489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 62 - 123
Target Start/End: Original strand, 4734224 - 4734285
Alignment:
Q  62 taataactaatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaa 123  Q
    |||||||| || |||  ||||||||||||||||||||||||||||||||  |||||||||||    
T  4734224 taataacttataggatcaaaatgtaaccaacaaataacttaagggaccaattcattaattaa 4734285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 123
Target Start/End: Complemental strand, 42962815 - 42962771
Alignment:
Q  79 aaaatgtaaccaacaaataacttaagggaccacatcattaattaa 123  Q
    |||||| |||||||||||||| |||||||||| ||||||||||||    
T  42962815 aaaatgcaaccaacaaataacctaagggaccaaatcattaattaa 42962771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 122
Target Start/End: Complemental strand, 4409224 - 4409164
Alignment:
Q  62 taataactaatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaatta 122  Q
    |||||||| ||| ||| ||| |||||| ||||||||| ||||| ||||| |||||||||||    
T  4409224 taataacttatgagaccaaattgtaactaacaaataatttaagagaccaaatcattaatta 4409164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 9e-30; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 29 - 123
Target Start/End: Complemental strand, 10286507 - 10286413
Alignment:
Q  29 ggaatatgacttaaagtcaccaaattgtaacagtaataactaatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaa 123  Q
    |||| |||||||||||  | |||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  10286507 ggaagatgacttaaagggatcaaattgtaacgttaataactaatgggactaaaatgtaaccaacaaataacttaagggaccaaatcattaattaa 10286413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 37 - 122
Target Start/End: Original strand, 52677799 - 52677884
Alignment:
Q  37 acttaaagtcaccaaattgtaacagtaataactaatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaatta 122  Q
    ||||||||  |||||||| ||||| |||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  52677799 acttaaagggaccaaattataacattaataacttatgagactaaaatgtaaccaacaaataacctaagggaccacatcattaatta 52677884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 47 - 123
Target Start/End: Complemental strand, 9268102 - 9268026
Alignment:
Q  47 accaaattgtaacagtaataactaatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaa 123  Q
    |||||||||||||  |||||||| ||||||| ||||||||||||| |||||||||||||||||| ||||||||||||    
T  9268102 accaaattgtaactttaataacttatgggaccaaaatgtaaccaataaataacttaagggaccaaatcattaattaa 9268026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 27 - 123
Target Start/End: Complemental strand, 10468579 - 10468483
Alignment:
Q  27 acggaatatgacttaaagtcaccaaattgtaacagtaataactaatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaa 123  Q
    |||||| |||||||||||  |||||||||||||  ||| |||| |   ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  10468579 acggaagatgacttaaagggaccaaattgtaacgttaaaaacttagatgactaaaatgtaaccaacaaataacttaagggaccacatcagtaattaa 10468483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 38 - 122
Target Start/End: Complemental strand, 49028351 - 49028267
Alignment:
Q  38 cttaaagtcaccaaattgtaacagtaataactaatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaatta 122  Q
    |||||||  ||||||| |||||  |||||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  49028351 cttaaagggaccaaatggtaacgttaataatttatgggactaaaatgtaaccaacaaataacttaagggaccacatcatcaatta 49028267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 47 - 123
Target Start/End: Original strand, 49028520 - 49028596
Alignment:
Q  47 accaaattgtaacagtaataactaatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaa 123  Q
    |||||||||||||| |||||| | ||||||| ||||||||||||| |||||||||||||||||| ||||||||||||    
T  49028520 accaaattgtaacattaataatttatgggaccaaaatgtaaccaataaataacttaagggaccaaatcattaattaa 49028596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 49 - 123
Target Start/End: Complemental strand, 45667308 - 45667234
Alignment:
Q  49 caaattgtaacagtaataactaatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaa 123  Q
    |||||||||||  |||||||| ||| ||| |||||||||||||||||||||||||||||||| ||||||||||||    
T  45667308 caaattgtaacgttaataacttatgagaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaa 45667234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 34 - 123
Target Start/End: Complemental strand, 12585250 - 12585161
Alignment:
Q  34 atgacttaaagtcaccaaattgtaacagtaataactaatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaa 123  Q
    |||||||||||  | ||||||||||   |||||||| ||| ||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  12585250 atgacttaaagggatcaaattgtaatgttaataacttatgagactaaaatgtaatcaacaaataacttaagggaccacgtcattaattaa 12585161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 47 - 123
Target Start/End: Original strand, 3990932 - 3991008
Alignment:
Q  47 accaaattgtaacagtaataactaatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaa 123  Q
    |||||||||||||  |||||||| ||||||| |||||||||||||||| ||||||||||||||| |||| |||||||    
T  3990932 accaaattgtaacgttaataacttatgggaccaaaatgtaaccaacaattaacttaagggaccaaatcaataattaa 3991008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 47 - 123
Target Start/End: Original strand, 10468737 - 10468813
Alignment:
Q  47 accaaattgtaacagtaataactaatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaa 123  Q
    |||||||||||||  |||||||| ||| ||| |||||||||||||||||||||||||||||||| || |||||||||    
T  10468737 accaaattgtaacgttaataacttatgagaccaaaatgtaaccaacaaataacttaagggaccaaatgattaattaa 10468813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 47 - 123
Target Start/End: Complemental strand, 52677631 - 52677555
Alignment:
Q  47 accaaattgtaacagtaataactaatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaa 123  Q
    |||||||||||||  |||||||| ||||||| ||| |||||||||||||||||||||||||||| || |||||||||    
T  52677631 accaaattgtaacgttaataacttatgggaccaaattgtaaccaacaaataacttaagggaccaaataattaattaa 52677555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 49 - 123
Target Start/End: Original strand, 622316 - 622390
Alignment:
Q  49 caaattgtaacagtaataactaatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaa 123  Q
    ||||| |||||| |||||||  || || ||||||||||||||||||||||||||||||| |||||||||||||||    
T  622316 caaatcgtaacattaataacatataggtctaaaatgtaaccaacaaataacttaagggatcacatcattaattaa 622390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 62 - 123
Target Start/End: Original strand, 9450930 - 9450991
Alignment:
Q  62 taataactaatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaa 123  Q
    |||||||| ||||||| |||| ||||||||||||||||||||||||||| ||||||||||||    
T  9450930 taataacttatgggaccaaaacgtaaccaacaaataacttaagggaccaaatcattaattaa 9450991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 50 - 123
Target Start/End: Complemental strand, 25225866 - 25225793
Alignment:
Q  50 aaattgtaacagtaataactaatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaa 123  Q
    ||||||||||  |||||||| ||| ||| ||||| |||||||||||||||||||||||||| ||||||||||||    
T  25225866 aaattgtaacgttaataacttatgagaccaaaatataaccaacaaataacttaagggaccaaatcattaattaa 25225793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 38 - 123
Target Start/End: Complemental strand, 36098833 - 36098748
Alignment:
Q  38 cttaaagtcaccaaattgtaacagtaataactaatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaa 123  Q
    |||||||  |||||||| ||||  |||||| | |||| |||||||| |||||||||||||||||||| ||||||||||||||||||    
T  36098833 cttaaagggaccaaattataacgttaataatttatggaactaaaatataaccaacaaataacttaagagaccacatcattaattaa 36098748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 47 - 123
Target Start/End: Original strand, 12585415 - 12585491
Alignment:
Q  47 accaaattgtaacagtaataactaatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaa 123  Q
    ||||||||||||   |||||||| ||| ||  |||||||||||||||||||||||||||||||| ||||||||||||    
T  12585415 accaaattgtaatgttaataacttatgagatcaaaatgtaaccaacaaataacttaagggaccaaatcattaattaa 12585491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 55 - 123
Target Start/End: Complemental strand, 28450821 - 28450753
Alignment:
Q  55 gtaacagtaataactaatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaa 123  Q
    |||||| |||||||| ||||||  |||||||||||||||||||| ||||||||||| ||||||||||||    
T  28450821 gtaacattaataacttatgggatcaaaatgtaaccaacaaataatttaagggaccaaatcattaattaa 28450753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 74 - 124
Target Start/End: Original strand, 21038396 - 21038446
Alignment:
Q  74 ggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaaa 124  Q
    ||||||||||||||||| |||||||||||||||| ||||||||||||||||    
T  21038396 ggactaaaatgtaaccagcaaataacttaagggatcacatcattaattaaa 21038446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 62 - 123
Target Start/End: Original strand, 21325702 - 21325763
Alignment:
Q  62 taataactaatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaa 123  Q
    |||||||||||| |||||||||||||||||||||||| ||||| || || ||||||||||||    
T  21325702 taataactaatgtgactaaaatgtaaccaacaaataatttaagagatcaaatcattaattaa 21325763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 28 - 108
Target Start/End: Original strand, 16067562 - 16067642
Alignment:
Q  28 cggaatatgacttaaagtcaccaaattgtaacagtaataactaatgggactaaaatgtaaccaacaaataacttaagggac 108  Q
    ||||| ||||||||| |  |||||||||||||  |||||||| ||| |||||||||||||||||||||||| |||| ||||    
T  16067562 cggaagatgacttaaggggaccaaattgtaacgttaataacttatgagactaaaatgtaaccaacaaataatttaaaggac 16067642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 53 - 123
Target Start/End: Complemental strand, 17931361 - 17931291
Alignment:
Q  53 ttgtaacagtaataactaatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaa 123  Q
    |||||||  |||||||| ||||||| ||| ||||||||| ||||||||||||||||||  |||||||||||    
T  17931361 ttgtaacgttaataacttatgggaccaaattgtaaccaataaataacttaagggaccaattcattaattaa 17931291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 53 - 123
Target Start/End: Original strand, 17932138 - 17932208
Alignment:
Q  53 ttgtaacagtaataactaatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaa 123  Q
    |||||||  |||||||| ||||||| ||| ||||||||| ||||||||||||||||||  |||||||||||    
T  17932138 ttgtaaccttaataacttatgggaccaaattgtaaccaataaataacttaagggaccaattcattaattaa 17932208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 62 - 123
Target Start/End: Original strand, 4439045 - 4439106
Alignment:
Q  62 taataactaatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaa 123  Q
    |||||||| ||| ||| ||| ||||||||||||||||||| ||||||||| |||||||||||    
T  4439045 taataacttatgagaccaaattgtaaccaacaaataactttagggaccacgtcattaattaa 4439106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 62 - 123
Target Start/End: Complemental strand, 9449779 - 9449718
Alignment:
Q  62 taataactaatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaa 123  Q
    |||||||| ||| ||| |||| |||||||||||||||||||| |||||| ||||||||||||    
T  9449779 taataacttatgagaccaaaacgtaaccaacaaataacttaatggaccaaatcattaattaa 9449718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 62 - 123
Target Start/End: Original strand, 28451548 - 28451609
Alignment:
Q  62 taataactaatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaa 123  Q
    ||||| || ||| ||| |||||||||||||||||||||||||||||| | ||||||||||||    
T  28451548 taatatcttatgagaccaaaatgtaaccaacaaataacttaagggactaaatcattaattaa 28451609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 124
Target Start/End: Complemental strand, 10202755 - 10202680
Alignment:
Q  49 caaattgtaacagtaataactaatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaaa 124  Q
    |||||||||||  |||||| | ||||||| |||||||||||| ||||||| |||| ||| || |||||||||||||    
T  10202755 caaattgtaacgttaataatttatgggaccaaaatgtaaccagcaaataatttaaaggatcaaatcattaattaaa 10202680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 113
Target Start/End: Complemental strand, 3990736 - 3990698
Alignment:
Q  75 gactaaaatgtaaccaacaaataacttaagggaccacat 113  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  3990736 gactaaaatgtaaccaacaaataatttaagggaccacat 3990698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 62 - 123
Target Start/End: Complemental strand, 4437744 - 4437683
Alignment:
Q  62 taataactaatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaa 123  Q
    |||||||| ||||||| ||| |||||||||||||||| |||| |||||| | ||||||||||    
T  4437744 taataacttatgggaccaaattgtaaccaacaaataatttaatggaccaaaccattaattaa 4437683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 123
Target Start/End: Complemental strand, 12315915 - 12315858
Alignment:
Q  66 aactaatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaa 123  Q
    |||| ||||||| ||| ||||||| ||||||||||||| |||||| ||||||||||||    
T  12315915 aacttatgggaccaaattgtaacctacaaataacttaaaggaccaaatcattaattaa 12315858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 47 - 104
Target Start/End: Complemental strand, 16067403 - 16067346
Alignment:
Q  47 accaaattgtaacagtaataactaatgggactaaaatgtaaccaacaaataacttaag 104  Q
    |||||||||||||  |||||| | || | |||||||||||||||||||||||||||||    
T  16067403 accaaattgtaacgttaataatttatagaactaaaatgtaaccaacaaataacttaag 16067346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 123
Target Start/End: Original strand, 45667369 - 45667402
Alignment:
Q  90 aacaaataacttaagggaccacatcattaattaa 123  Q
    |||||||||||||| |||||||||||||||||||    
T  45667369 aacaaataacttaaaggaccacatcattaattaa 45667402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 27 - 123
Target Start/End: Complemental strand, 23322197 - 23322101
Alignment:
Q  27 acggaatatgacttaaagtcaccaaattgtaacagtaataactaatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaa 123  Q
    |||||| |||||||||||  |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||  ||| ||||||||||||||    
T  23322197 acggaagatgacttaaagggaccaaattgtaacattaataacttatgggactaaaatgtaaccaacaaataacttaatagactacatcattaattaa 23322101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 27 - 124
Target Start/End: Complemental strand, 5840976 - 5840879
Alignment:
Q  27 acggaatatgacttaaagtcaccaaattgtaacagtaataactaatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaaa 124  Q
    |||||| |||||||||||  | |||||||||||  |||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  5840976 acggaagatgacttaaagggatcaaattgtaacgttaataacttatggcactaaaatataaccaacaaataacttaagggaccacatcattaattaaa 5840879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 47 - 123
Target Start/End: Original strand, 23322355 - 23322431
Alignment:
Q  47 accaaattgtaacagtaataactaatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaa 123  Q
    |||||||||||||  |||||||| |||| || |||||||||||||||||||||||||||||||| ||||||||||||    
T  23322355 accaaattgtaacgttaataacttatggaaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaa 23322431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 47 - 123
Target Start/End: Complemental strand, 34634147 - 34634071
Alignment:
Q  47 accaaattgtaacagtaataactaatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaa 123  Q
    |||||| ||||||  |||||||| ||||||| ||| ||||||||||||||||||||| |||||||||||||||||||    
T  34634147 accaaaatgtaacgttaataacttatgggaccaaattgtaaccaacaaataacttaaaggaccacatcattaattaa 34634071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 47 - 123
Target Start/End: Complemental strand, 42793027 - 42792951
Alignment:
Q  47 accaaattgtaacagtaataactaatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaa 123  Q
    |||||||||||||| |||||| | ||||||| |||||| ||||||||||||||||||| ||||| ||||||||||||    
T  42793027 accaaattgtaacattaataatttatgggaccaaaatgaaaccaacaaataacttaagcgaccaaatcattaattaa 42792951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 47 - 123
Target Start/End: Original strand, 5841134 - 5841210
Alignment:
Q  47 accaaattgtaacagtaataactaatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaa 123  Q
    |||||||||||||  |||||| | ||||||| |||||||||||||||||||| ||||| ||||| ||||||||||||    
T  5841134 accaaattgtaacgttaataatttatgggaccaaaatgtaaccaacaaataagttaagagaccaaatcattaattaa 5841210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 47 - 123
Target Start/End: Complemental strand, 43183309 - 43183233
Alignment:
Q  47 accaaattgtaacagtaataactaatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaa 123  Q
    ||||||||||||   |||||| | ||||||| |||||||||||||||||||||||||||||||| || |||||||||    
T  43183309 accaaattgtaatgttaataatttatgggaccaaaatgtaaccaacaaataacttaagggaccaaattattaattaa 43183233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 73 - 123
Target Start/End: Original strand, 15933610 - 15933660
Alignment:
Q  73 gggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaa 123  Q
    |||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  15933610 gggactaaaatgtaaccaacaaataacttaagggaccaaatcatgaattaa 15933660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 50 - 123
Target Start/End: Complemental strand, 15933432 - 15933359
Alignment:
Q  50 aaattgtaacagtaataactaatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaa 123  Q
    ||||||||||  |||||||| ||| ||||||||| ||||||||||||||  ||||||||||||||||| |||||    
T  15933432 aaattgtaacgttaataacttatgagactaaaatataaccaacaaataatataagggaccacatcattgattaa 15933359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 34 - 123
Target Start/End: Original strand, 25089034 - 25089123
Alignment:
Q  34 atgacttaaagtcaccaaattgtaacagtaataactaatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaa 123  Q
    |||||||||||  | ||||||||| || |||||||| |||  |||||||| ||||||| ||||||||||||| ||||| |||||||||||    
T  25089034 atgacttaaagggatcaaattgtagcattaataacttatgacactaaaatataaccaataaataacttaaggaaccacgtcattaattaa 25089123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 34 - 123
Target Start/End: Original strand, 25147003 - 25147092
Alignment:
Q  34 atgacttaaagtcaccaaattgtaacagtaataactaatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaa 123  Q
    |||||||||||  | ||||||||| || |||||||| |||  |||||||| ||||||| ||||||||||||| ||||| |||||||||||    
T  25147003 atgacttaaagggatcaaattgtagcattaataacttatgacactaaaatataaccaataaataacttaaggaaccacgtcattaattaa 25147092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 55 - 123
Target Start/End: Original strand, 9380718 - 9380786
Alignment:
Q  55 gtaacagtaataactaatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaa 123  Q
    |||||| |||||||| ||||||  ||||||||||||||||||||||||||||| ||  |||||||||||    
T  9380718 gtaacattaataacttatgggatcaaaatgtaaccaacaaataacttaagggatcaattcattaattaa 9380786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 62 - 123
Target Start/End: Complemental strand, 9379994 - 9379933
Alignment:
Q  62 taataactaatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaa 123  Q
    ||||||||  ||| || ||||||||||||||||||||||||||||||||  |||||||||||    
T  9379994 taataacttgtggaaccaaaatgtaaccaacaaataacttaagggaccaattcattaattaa 9379933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 47 - 110
Target Start/End: Complemental strand, 25088483 - 25088420
Alignment:
Q  47 accaaattgtaacagtaataactaatgggactaaaatgtaaccaacaaataacttaagggacca 110  Q
    |||||||||||||  |||||| | ||| ||| |||||||||||||||||||||||| |||||||    
T  25088483 accaaattgtaacgttaataatttatgcgaccaaaatgtaaccaacaaataacttacgggacca 25088420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 47 - 110
Target Start/End: Complemental strand, 25146452 - 25146389
Alignment:
Q  47 accaaattgtaacagtaataactaatgggactaaaatgtaaccaacaaataacttaagggacca 110  Q
    |||||||||||||  |||||| | ||| ||| |||||||||||||||||||||||| |||||||    
T  25146452 accaaattgtaacgttaataatttatgcgaccaaaatgtaaccaacaaataacttacgggacca 25146389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 124
Target Start/End: Original strand, 1501068 - 1501165
Alignment:
Q  26 aacggaatatgacttaaagtcaccaaattgtaacagtaataactaatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaaa 124  Q
    |||||||||| |||||| |  |||||| ||||||  |||||| | ||||||| |||||| |||||| ||||||||||||||| || || ||||||||||    
T  1501068 aacggaatataacttaaggg-accaaaatgtaacgttaataatttatgggaccaaaatgaaaccaataaataacttaagggatcaaatgattaattaaa 1501165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 123
Target Start/End: Original strand, 20244523 - 20244584
Alignment:
Q  62 taataactaatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaa 123  Q
    |||||| | ||||||| |||||||||||||||||||| |||||  || | ||||||||||||    
T  20244523 taataatttatgggaccaaaatgtaaccaacaaataatttaagtaacaaaatcattaattaa 20244584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 8e-24; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 27 - 123
Target Start/End: Complemental strand, 3659051 - 3658955
Alignment:
Q  27 acggaatatgacttaaagtcaccaaattgtaacagtaataactaatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaa 123  Q
    |||||| |||||||||||  | |||||||||||  |||||||| ||||||||||| ||||||||| ||||||||||||||||||||||| |||||||    
T  3659051 acggaagatgacttaaagggatcaaattgtaactttaataacttatgggactaaactgtaaccaataaataacttaagggaccacatcagtaattaa 3658955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 62 - 123
Target Start/End: Original strand, 3659223 - 3659284
Alignment:
Q  62 taataactaatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaa 123  Q
    |||||||| ||||||| |||||||||| ||||||||||||||||||||| ||||||||||||    
T  3659223 taataacttatgggaccaaaatgtaactaacaaataacttaagggaccaaatcattaattaa 3659284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 74 - 123
Target Start/End: Original strand, 8287449 - 8287498
Alignment:
Q  74 ggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaa 123  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  8287449 ggactaaaatgtaaccaacaaataacttaagggaccaaatcattaattaa 8287498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 47 - 123
Target Start/End: Original strand, 5367672 - 5367747
Alignment:
Q  47 accaaattgtaacagtaataactaatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaa 123  Q
    |||||||||||||  |||||||| |||| || ||||||||||||||||||||||||| |||||| ||||||||||||    
T  5367672 accaaattgtaacgttaataacttatggaaccaaaatgtaaccaacaaataacttaa-ggaccaaatcattaattaa 5367747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 47 - 123
Target Start/End: Complemental strand, 28944324 - 28944248
Alignment:
Q  47 accaaattgtaacagtaataactaatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaa 123  Q
    |||||||||||||| |||||||| | | || ||||||||||||||||||| |||||||||| || || |||||||||    
T  28944324 accaaattgtaacattaataacttacgagattaaaatgtaaccaacaaatgacttaagggagcagatgattaattaa 28944248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 73 - 123
Target Start/End: Complemental strand, 8286841 - 8286791
Alignment:
Q  73 gggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaa 123  Q
    ||||| |||||||||||||||||||||||||||||| | ||||||||||||    
T  8286841 gggaccaaaatgtaaccaacaaataacttaagggactaaatcattaattaa 8286791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 82 - 123
Target Start/End: Complemental strand, 5367451 - 5367410
Alignment:
Q  82 atgtaaccaacaaataacttaagggaccacatcattaattaa 123  Q
    ||||||||||||||||||||||||||||| |||| |||||||    
T  5367451 atgtaaccaacaaataacttaagggaccatatcagtaattaa 5367410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 90
Target Start/End: Complemental strand, 5367507 - 5367451
Alignment:
Q  34 atgacttaaagtcaccaaattgtaacagtaataactaatgggactaaaatgtaacca 90  Q
    |||||||||||  ||||||||||||   |||||||| ||| ||||||||||||||||    
T  5367507 atgacttaaagagaccaaattgtaatgttaataacttatgagactaaaatgtaacca 5367451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 47 - 123
Target Start/End: Complemental strand, 19974 - 19898
Alignment:
Q  47 accaaattgtaacagtaataactaatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaa 123  Q
    |||||||||||||  |||||||| ||| ||| |||||||||||||||||||||||||||||||| ||||||||||||    
T  19974 accaaattgtaacgttaataacttatgcgaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaa 19898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 47 - 123
Target Start/End: Original strand, 20156 - 20231
Alignment:
Q  47 accaaattgtaacagtaataactaatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaa 123  Q
    |||||||||||||  |||||| | |||| | |||||| ||||||||||||||||||| |||||||||||||||||||    
T  20156 accaaattgtaacgttaataaattatggaattaaaatataaccaacaaataacttaa-ggaccacatcattaattaa 20231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 47 - 115
Target Start/End: Complemental strand, 266700 - 266632
Alignment:
Q  47 accaaattgtaacagtaataactaatgggactaaaatgtaaccaacaaataacttaagggaccacatca 115  Q
    |||||||| ||||| |||||||| || |||||||||||||||||||||||||||||||| |||||||||    
T  266700 accaaattataacattaataacttatcggactaaaatgtaaccaacaaataacttaaggaaccacatca 266632  T

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Target: scaffold0008; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 62 - 124
Target Start/End: Original strand, 266892 - 266954
Alignment:
Q  62 taataactaatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaaa 124  Q
    |||||||| ||| ||| ||||||||||||||||||||||||| |||||| |||||||||||||    
T  266892 taataacttatgtgaccaaaatgtaaccaacaaataacttaaaggaccaaatcattaattaaa 266954  T

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Target: chr7 (Bit Score: 47; Significance: 8e-18; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 49 - 123
Target Start/End: Complemental strand, 8905717 - 8905643
Alignment:
Q  49 caaattgtaacagtaataactaatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaa 123  Q
    |||||||||||| |||||||| ||| ||| |||||||||||||||||||||||||| ||||| |||||| |||||    
T  8905717 caaattgtaacattaataacttatgagaccaaaatgtaaccaacaaataacttaagagaccaaatcattgattaa 8905643  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 47 - 123
Target Start/End: Original strand, 4265233 - 4265309
Alignment:
Q  47 accaaattgtaacagtaataactaatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaa 123  Q
    |||||||||||||  |||||||| ||||||  ||||||||||| |||| ||||||||||||||| ||||||||||||    
T  4265233 accaaattgtaacgttaataacttatgggatcaaaatgtaaccgacaactaacttaagggaccaaatcattaattaa 4265309  T

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Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 27 - 123
Target Start/End: Original strand, 8905876 - 8905972
Alignment:
Q  27 acggaatatgacttaaagtcaccaaattgtaacagtaataactaatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaa 123  Q
    |||||| ||||||||||||   |||||||||||  |||||| | |||  | |||||| ||||||||||||||||||||||| |||||||||||||||    
T  8905876 acggaagatgacttaaagtggtcaaattgtaaccttaataatttatgaaagtaaaatataaccaacaaataacttaagggatcacatcattaattaa 8905972  T

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Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 38 - 123
Target Start/End: Complemental strand, 4265064 - 4264979
Alignment:
Q  38 cttaaagtcaccaaattgtaacagtaataactaatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaa 123  Q
    |||||||  ||||||||||||   |||||||| ||| ||||||||||| ||||| |||||||||||  ||||||||||||||||||    
T  4265064 cttaaagagaccaaattgtaatgttaataacttatgagactaaaatgtcaccaaaaaataacttaaaagaccacatcattaattaa 4264979  T

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Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 62 - 123
Target Start/End: Original strand, 25749402 - 25749463
Alignment:
Q  62 taataactaatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaa 123  Q
    |||||||| ||| ||||||| ||||||||||||||||||||||||| ||||| |||||||||    
T  25749402 taataacttatgagactaaattgtaaccaacaaataacttaagggaacacataattaattaa 25749463  T

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Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 62 - 119
Target Start/End: Original strand, 18471778 - 18471835
Alignment:
Q  62 taataactaatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaa 119  Q
    |||||||| ||| ||| ||||||||||||||| |||||||||||||||| ||||||||    
T  18471778 taataacttatgagaccaaaatgtaaccaacagataacttaagggaccaaatcattaa 18471835  T

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Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 123
Target Start/End: Complemental strand, 25749390 - 25749315
Alignment:
Q  47 accaaattgtaacagtaataactaatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaa 123  Q
    |||||||||||||  |||||||| |||| |||||||| || ||||| ||||||| ||||||||  ||||||||||||    
T  25749390 accaaattgtaacgttaataacttatggaactaaaatatagccaac-aataactaaagggaccgaatcattaattaa 25749315  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 56 - 123
Target Start/End: Complemental strand, 18470209 - 18470142
Alignment:
Q  56 taacagtaataactaatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaa 123  Q
    ||||| |||||||| ||| | | |||||||||||||||||||| |||||| || | ||||||||||||    
T  18470209 taacattaataacttatgtggccaaaatgtaaccaacaaataatttaaggcacaaaatcattaattaa 18470142  T

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Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 62 - 123
Target Start/End: Complemental strand, 9114883 - 9114822
Alignment:
Q  62 taataactaatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaa 123  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||| | ||||||||||||    
T  9114883 taataacttatgggaccaaaatgtaaccaacaaataacttaagggacaaaatcattaattaa 9114822  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 62 - 123
Target Start/End: Complemental strand, 14903870 - 14903809
Alignment:
Q  62 taataactaatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaa 123  Q
    |||||||| ||||||  |||||||||||||||||||||||||||||||| ||||||||||||    
T  14903870 taataacttatgggatcaaaatgtaaccaacaaataacttaagggaccaaatcattaattaa 14903809  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 62 - 123
Target Start/End: Original strand, 14904603 - 14904664
Alignment:
Q  62 taataactaatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaa 123  Q
    ||||| || ||||||| |||||||||||||||||||||||||||||| | ||||||||||||    
T  14904603 taatatcttatgggaccaaaatgtaaccaacaaataacttaagggactaaatcattaattaa 14904664  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 49 - 123
Target Start/End: Original strand, 30335231 - 30335304
Alignment:
Q  49 caaattgtaacagtaataactaatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaa 123  Q
    |||||||||||  |||||||| ||| ||||||| |||||  |||||||||||||| |||||||||||||||||||    
T  30335231 caaattgtaacgttaataacttatgagactaaagtgtaagtaacaaataacttaa-ggaccacatcattaattaa 30335304  T

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Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 62 - 123
Target Start/End: Original strand, 17690943 - 17691004
Alignment:
Q  62 taataactaatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaa 123  Q
    |||||||| ||||||| | ||  |||||||||||||||||||||||||| ||||||||||||    
T  17690943 taataacttatgggaccagaacataaccaacaaataacttaagggaccaaatcattaattaa 17691004  T

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Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 123
Target Start/End: Complemental strand, 37499224 - 37499179
Alignment:
Q  78 taaaatgtaaccaacaaataacttaagggaccacatcattaattaa 123  Q
    |||||||||| |||||||||||||||||||||| ||||||||||||    
T  37499224 taaaatgtaagcaacaaataacttaagggaccaaatcattaattaa 37499179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 123
Target Start/End: Original strand, 37499432 - 37499505
Alignment:
Q  50 aaattgtaacagtaataactaatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaa 123  Q
    ||||| ||||| |||||||| ||| ||| |||||||||||||||||||||||||| |  || ||||||||||||    
T  37499432 aaattataacattaataacttatgagaccaaaatgtaaccaacaaataacttaagaggtcaaatcattaattaa 37499505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 84 - 123
Target Start/End: Complemental strand, 17689778 - 17689739
Alignment:
Q  84 gtaaccaacaaataacttaagggaccacatcattaattaa 123  Q
    |||| |||||||||||||||||||||| ||||||||||||    
T  17689778 gtaatcaacaaataacttaagggaccaaatcattaattaa 17689739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 103
Target Start/End: Original strand, 9116069 - 9116110
Alignment:
Q  62 taataactaatgggactaaaatgtaaccaacaaataacttaa 103  Q
    |||||||| ||| ||| |||||||||||||||||||||||||    
T  9116069 taataacttatgagaccaaaatgtaaccaacaaataacttaa 9116110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 49 - 113
Target Start/End: Original strand, 93890 - 93954
Alignment:
Q  49 caaattgtaacagtaataactaatgggactaaaatgtaaccaacaaataacttaagggaccacat 113  Q
    |||||||||||  |||||| | |||||||||||||||||||||||||||| |||| ||| |||||    
T  93890 caaattgtaacgttaataatttatgggactaaaatgtaaccaacaaataaattaatggagcacat 93954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 123
Target Start/End: Complemental strand, 93707 - 93635
Alignment:
Q  50 aaattgtaacagtaataactaatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaa 123  Q
    ||||||||||  |||||| | ||||||| |||||||||| |||||||||||||| ||| || ||||||||||||    
T  93707 aaattgtaacgttaataatttatgggaccaaaatgtaactaacaaataacttaa-ggatcaaatcattaattaa 93635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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