View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13666_high_1 (Length: 238)
Name: NF13666_high_1
Description: NF13666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13666_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 54013926 - 54014146
Alignment:
| Q |
1 |
tcaaaaatcaaaacatagccgtataccaaacttccggatccatatcccatcattgaagccccaaagataggtattccaatcactgccatcaaaattagat |
100 |
Q |
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| T |
54013926 |
tcaaaaatcaaaacatagccgtataccaaacttccggatccatatcccatcattgaagccccaaagataggtattccaatcactgccatcaaaattagat |
54014025 |
T |
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| Q |
101 |
gttccaaaaatgttgcatttccagctgcaccaatacaaagtcatgcttaatcaccaatacaatatttacatgtagtttggaaggagtatagaataggttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54014026 |
gttccaaaaatgttgcatttccagctgcaccaatacaaagtcatgcttaatcaccaatacaatatttacatgtagtttggaaggagtatagaataggttc |
54014125 |
T |
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| Q |
201 |
caatataggataggtcctatt |
221 |
Q |
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||||||||||| ||||||||| |
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| T |
54014126 |
caatataggatcggtcctatt |
54014146 |
T |
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