View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13666_high_10 (Length: 306)
Name: NF13666_high_10
Description: NF13666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13666_high_10 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 84; Significance: 6e-40; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 167 - 306
Target Start/End: Complemental strand, 9478061 - 9477923
Alignment:
| Q |
167 |
gatatgccaatacataaatacatcacagggttgaggcatcccaattataataatcgaatgcgatgttttcaaattttgctgttaaccatcaaaaacgata |
266 |
Q |
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| T |
9478061 |
gataagccaatgcataaacacatcacagggttgaggcaccccaattataataatcgaatgcgatgtttttaaattttgccgttaacca-ccaaaacgaca |
9477963 |
T |
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| Q |
267 |
acaactaaatattatttaaaggttgaattaaagtggttgt |
306 |
Q |
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| T |
9477962 |
acaactaaatactatctaaaggctgaattaaagtgcttgt |
9477923 |
T |
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Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 11 - 104
Target Start/End: Complemental strand, 9478217 - 9478124
Alignment:
| Q |
11 |
cataggatgatagttatcttgaaataaactcctnnnnnnngttatcttaaaatagatagagtatttttgtatattccatcttttcgtattaggg |
104 |
Q |
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| T |
9478217 |
cataggatgatagttatcttgaaataaactcctaaaaaatgttatcttaaaatagatagagtatttttgtatattccatcttttcgtattaggg |
9478124 |
T |
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