View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13666_high_5 (Length: 368)
Name: NF13666_high_5
Description: NF13666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13666_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 147 - 352
Target Start/End: Original strand, 32377103 - 32377307
Alignment:
| Q |
147 |
gataccaaacctccttgaagatgaatcttgcatgcatccattccaactttgagaaataacacaagcattgattaaaagttaagcaaaggactttagttga |
246 |
Q |
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| T |
32377103 |
gataccaaacctccttgaagatgattcttgcatgcatccattccaactttgagaaataacacaagcattgattaaaagttaagcaaaggactttagttga |
32377202 |
T |
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| Q |
247 |
acaccatcatccttagccaattcagcatgcataaatgaatcattagattccaccacccaggcttgtgtcaccaaacttgtaccattcataacatttcatc |
346 |
Q |
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| T |
32377203 |
acaccatcatccttagccaattcagcatgcataaatgaatcattagattccacca-tcaggcttgtgtcaccaaacttgtaccattcataacatttcatc |
32377301 |
T |
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| Q |
347 |
attgat |
352 |
Q |
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|||||| |
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| T |
32377302 |
attgat |
32377307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 32376881 - 32377014
Alignment:
| Q |
1 |
gttccgaggcaaatagtaattgcaaaaagaatttttgaacgtcattgttcttgaagcaatcccatagcaagaatccaacattgcaccgttgaccatttta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
32376881 |
gttccgaggcaaatagtaattgcaaaaagaatttttgaacgtcattgttcttgaagcaatcccatagcaagaatccaaca--------------atttta |
32376966 |
T |
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| Q |
101 |
aagatcttcaatggcaaataaaagttcaaaaaatcctttttctaaaga |
148 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
32376967 |
aagatcttcaatggcaaataaaagttcataaaatcctttttctaaaga |
32377014 |
T |
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