View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13666_high_6 (Length: 336)
Name: NF13666_high_6
Description: NF13666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13666_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 264; Significance: 1e-147; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 375580 - 375270
Alignment:
| Q |
1 |
atttccattcagttattgaaataataatccccaagtacatcaagaaacaatactcccttaagatttacacattaaaattttgcaactcatgcatccacaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
375580 |
atttccattcagttattgaaataataatccccaagtacatcaagaaacaatactcccttaagatttacacattaaaattttgcaactcatgcatccacaa |
375481 |
T |
|
| Q |
101 |
gctcttgaagaaataatcactgtatattcaatgcaatgaattatcttctacttcaactcta-gagccaaactttctccttaccctccttgtgttcctagg |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||| | |||||||||||||||||||||||||||||||||| | |
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| T |
375480 |
gctcttgaagaaataatcactgtatattcaatgcaatgaattatcttttgcttcaattctaggggccaaactttctccttaccctccttgtgttccta-g |
375382 |
T |
|
| Q |
200 |
ggaatgtgacatgtgtgttgaacatggtttagtagaatgaacatcaggtacaccatttttaatcaccatgtcagtctgaaacttgagctggagaaatggc |
299 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
375381 |
ggaatgtgacatggatgttgaacatggtttagtagaatgaacattaggtacaccatttttaattaccatgtcagtctgaaacttgagctggagaaatggc |
375282 |
T |
|
| Q |
300 |
tttatgctcttc |
311 |
Q |
| |
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|||||||||||| |
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|
| T |
375281 |
tttatgctcttc |
375270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 165 - 320
Target Start/End: Complemental strand, 1571991 - 1571834
Alignment:
| Q |
165 |
ccaaactttctccttaccctccttgtgttcctaggggaatgtgacatgtgtgttgaacatggtttagtagaatgaacatcaggtacaccatttttaatca |
264 |
Q |
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|||||||| ||||||||||||||||||||||||||| |||||| | || |||||||||||||||| |||||||| ||| ||| ||| |||| | | | | |
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|
| T |
1571991 |
ccaaacttcctccttaccctccttgtgttcctagggaaatgtgtcttggatgttgaacatggtttaatagaatgagcattaggaacagcattctcagtga |
1571892 |
T |
|
| Q |
265 |
ccatgtc--agtctgaaacttgagctggagaaatggctttatgctcttcaactgattc |
320 |
Q |
| |
|
||||||| |||||||||||||| || ||||||| | ||| | ||||||||||||||| |
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|
| T |
1571891 |
ccatgtcagagtctgaaacttgatctcgagaaatcgatttcttctcttcaactgattc |
1571834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 165 - 320
Target Start/End: Original strand, 1560253 - 1560410
Alignment:
| Q |
165 |
ccaaactttctccttaccctccttgtgttcctaggggaatgtgacatgtgtgttgaacatggtttagtagaatgaacatcaggtacaccatttttaatca |
264 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| |||||| | || |||||||||||||||| |||||||| ||| ||| ||| |||| | | | |
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| T |
1560253 |
ccaaacttcctccttaccctccttgtgttcctagggaaatgtgtcttggatgttgaacatggtttaatagaatgagcattaggaacagcattcgcagtga |
1560352 |
T |
|
| Q |
265 |
ccatgt--cagtctgaaacttgagctggagaaatggctttatgctcttcaactgattc |
320 |
Q |
| |
|
|||||| |||||||||||||| || ||||||||| ||| | ||||||||||||||| |
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|
| T |
1560353 |
ccatgttagagtctgaaacttgatctcgagaaatggatttctactcttcaactgattc |
1560410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 165 - 256
Target Start/End: Complemental strand, 1097050 - 1096959
Alignment:
| Q |
165 |
ccaaactttctccttaccctccttgtgttcctaggggaatgtgacatgtgtgttgaacatggtttagtagaatgaacatcaggtacaccatt |
256 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| |||||| | || |||||||||||||||| |||||||| ||| ||| ||| |||| |
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| T |
1097050 |
ccaaacttcctccttaccctccttgtgttcctagggaaatgtgtcttggatgttgaacatggtttaatagaatgagcattaggaacagcatt |
1096959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 1560012 - 1560066
Alignment:
| Q |
8 |
ttcagttattgaaataataatc-cccaagtacatcaagaaacaatactcccttaa |
61 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||||||||| |||| |||||| |
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|
| T |
1560012 |
ttcagttattgaagtaataatctcccaagtacatcaagaaacagtacttccttaa |
1560066 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 62; Significance: 9e-27; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 174 - 320
Target Start/End: Original strand, 24496578 - 24496726
Alignment:
| Q |
174 |
ctccttaccctccttgtgttcctaggggaatgtgacatgtgtgttgaacatggtttagtagaatgaacatcaggtacaccatttttaatcaccatgtcag |
273 |
Q |
| |
|
||||||||||||||||||||||||||| |||| | | || ||||||||| |||||| ||||||| ||| ||||||| |||| | | | |||||||||| |
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| T |
24496578 |
ctccttaccctccttgtgttcctagggaaatgagtcttggttgttgaacaaggtttaatagaatgggcattaggtacagcattctcagttaccatgtcag |
24496677 |
T |
|
| Q |
274 |
--tctgaaacttgagctggagaaatggctttatgctcttcaactgattc |
320 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||||||| ||||||| |
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|
| T |
24496678 |
agtctgaaacttgagctggagaaatggatttctgctcttcagctgattc |
24496726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 119
Target Start/End: Original strand, 24496503 - 24496560
Alignment:
| Q |
63 |
atttacacattaaaattttgcaactca-tgcatccacaagctcttgaagaaataatca |
119 |
Q |
| |
|
|||||||||||| || ||| |||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
24496503 |
atttacacattatgatgttgtaactcactgcatccacaaactcttgaagaaataatca |
24496560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 8e-18; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 165 - 320
Target Start/End: Original strand, 18734778 - 18734934
Alignment:
| Q |
165 |
ccaaactttctccttaccctccttgtgttcctaggggaatgtgacatgtgtgttgaacatggtttagtagaatgaacatcaggtacaccatttttaatca |
264 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||||||| |||| | | || ||||||||| |||||| |||||||| ||| ||| ||| ||| | | | |
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|
| T |
18734778 |
ccaaacttcctccttaccttccttgtgttcctagggaaatgagtcttggttgttgaacaaggtttaatagaatgagcattaggaacagaattcat-gtga |
18734876 |
T |
|
| Q |
265 |
ccatgtc--agtctgaaacttgagctggagaaatggctttatgctcttcaactgattc |
320 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||| ||| ||||||||||||||||| |
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|
| T |
18734877 |
ccatgtcagagtctgaaacttgagctggggaaatgcatttctgctcttcaactgattc |
18734934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 320
Target Start/End: Original strand, 18727646 - 18727694
Alignment:
| Q |
272 |
agtctgaaacttgagctggagaaatggctttatgctcttcaactgattc |
320 |
Q |
| |
|
||||||||||||||||||| |||||| ||| ||||||||||||||||| |
|
|
| T |
18727646 |
agtctgaaacttgagctggggaaatgcatttctgctcttcaactgattc |
18727694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 18753497 - 18753552
Alignment:
| Q |
8 |
ttcagttattgaaataataatc-cccaagtacatc-aagaaacaatactcccttaa |
61 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||| ||||||||||||| |||||| |
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|
| T |
18753497 |
ttcagttattgaagtaataatctcccaagtacatcaaagaaacaatacttccttaa |
18753552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 214
Target Start/End: Original strand, 18727586 - 18727635
Alignment:
| Q |
165 |
ccaaactttctccttaccctccttgtgttcctaggggaatgtgacatgtg |
214 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||||||| |||| | |||||| |
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|
| T |
18727586 |
ccaaacttcctccttaccttccttgtgttcctagggaaatgagtcatgtg |
18727635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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