View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13667_high_2 (Length: 594)

Name: NF13667_high_2
Description: NF13667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13667_high_2
NF13667_high_2
[»] chr6 (4 HSPs)
chr6 (182-309)||(6567344-6567468)
chr6 (57-167)||(35195264-35195373)
chr6 (301-372)||(6567230-6567302)
chr6 (1-48)||(35195396-35195443)
[»] chr8 (12 HSPs)
chr8 (266-372)||(7799358-7799469)
chr8 (266-372)||(7819348-7819459)
chr8 (266-310)||(7799058-7799102)
chr8 (266-310)||(7799208-7799252)
chr8 (252-307)||(7818313-7818369)
chr8 (266-307)||(7819197-7819238)
chr8 (167-211)||(7799150-7799194)
chr8 (167-211)||(7799300-7799344)
chr8 (167-210)||(7799000-7799043)
chr8 (167-210)||(7818271-7818314)
chr8 (167-210)||(7818420-7818463)
chr8 (167-210)||(7819290-7819333)
[»] chr3 (1 HSPs)
chr3 (361-414)||(22190796-22190850)


Alignment Details
Target: chr6 (Bit Score: 86; Significance: 8e-41; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 182 - 309
Target Start/End: Complemental strand, 6567468 - 6567344
Alignment:
Q  182 cacaatgcatcgaaagagagtgaaacataaacttacttggagtacaagtatcatctagtgatagtacagttagcttaagtgtagtacaattagcttaagt 281  Q
    ||||||||||| |||||||||||||||||| |||| |||||||||||||| |   ||||||||||||| |||||||| |||| |||||||||||||||||    
T  6567468 cacaatgcatcaaaagagagtgaaacataagcttaattggagtacaagtaac---tagtgatagtacaattagcttatgtgtcgtacaattagcttaagt 6567372  T
Q  282 gtagtacagttacatcttgtatatatat 309  Q
    ||||||||||||||||||||||||||||    
T  6567371 gtagtacagttacatcttgtatatatat 6567344  T

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Target: chr6; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 57 - 167
Target Start/End: Complemental strand, 35195373 - 35195264
Alignment:
Q  57 accaaatagttcaaattaaaccataataaaaagtaattttaggaatacttggaggggggnnnnnnntcatataaactagttcatgttttatcggaggcat 156  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||| ||||||| |    
T  35195373 accaaatagttcaaattaaaccataataaaaagtaattttaggaatacttggagggggg-gaaaaatcatataaactagttcatgttttaccggaggcgt 35195275  T
Q  157 tttgaactatt 167  Q
    |||||||||||    
T  35195274 tttgaactatt 35195264  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 301 - 372
Target Start/End: Complemental strand, 6567302 - 6567230
Alignment:
Q  301 tatatatatgattgtattcacttcattcaaggttaataagaatcattttcac-ttttctctagtttcataata 372  Q
    |||||||||||||||| | ||||||||||     |||||||||||||||||| ||||||||||||||||||||    
T  6567302 tatatatatgattgtacttacttcattcacaagcaataagaatcattttcacattttctctagtttcataata 6567230  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 35195443 - 35195396
Alignment:
Q  1 cccttcaatctggttcgcagccgctgctttctaatcagaacaaattaa 48  Q
    ||||||||||| |||||||||||||||||| ||||||||||||| |||    
T  35195443 cccttcaatctagttcgcagccgctgctttttaatcagaacaaaataa 35195396  T

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Target: chr8 (Bit Score: 63; Significance: 4e-27; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 266 - 372
Target Start/End: Original strand, 7799358 - 7799469
Alignment:
Q  266 tacaattagcttaagtgtagtacagttacatcttgtatata----tatgattgtattcacttcattcaaggttaataagaatcattttcac-ttttctct 360  Q
    |||||||||||||||||||||||||||||||||||||||||    |||||||||| ||||||||||||     |||||||||||||||||| ||||||||    
T  7799358 tacaattagcttaagtgtagtacagttacatcttgtatatatatgtatgattgtactcacttcattcacaagcaataagaatcattttcacattttctct 7799457  T
Q  361 agtttcataata 372  Q
    ||||||||||||    
T  7799458 agtttcataata 7799469  T

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Target: chr8; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 266 - 372
Target Start/End: Original strand, 7819348 - 7819459
Alignment:
Q  266 tacaattagcttaagtgtagtacagttacatcttgtatata----tatgattgtattcacttcattcaaggttaataagaatcattttcac-ttttctct 360  Q
    |||||||||||||||||||||||||||||||||||||||||    ||| |||||| ||||||||||||     |||||||||||||||||| ||||||||    
T  7819348 tacaattagcttaagtgtagtacagttacatcttgtatatatctgtattattgtactcacttcattcacaagcaataagaatcattttcacattttctct 7819447  T
Q  361 agtttcataata 372  Q
    ||||||||||||    
T  7819448 agtttcataata 7819459  T

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Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 266 - 310
Target Start/End: Original strand, 7799058 - 7799102
Alignment:
Q  266 tacaattagcttaagtgtagtacagttacatcttgtatatatatg 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  7799058 tacaattagcttaagtgtagtacagttacatcttgtatatatatg 7799102  T

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Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 266 - 310
Target Start/End: Original strand, 7799208 - 7799252
Alignment:
Q  266 tacaattagcttaagtgtagtacagttacatcttgtatatatatg 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  7799208 tacaattagcttaagtgtagtacagttacatcttgtatatatatg 7799252  T

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Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 252 - 307
Target Start/End: Original strand, 7818313 - 7818369
Alignment:
Q  252 tagcttaagtg-tagtacaattagcttaagtgtagtacagttacatcttgtatatat 307  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||    
T  7818313 tagcttaagtgatactacaattagcttaagtgtagtacagttacatcttgtatatat 7818369  T

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Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 266 - 307
Target Start/End: Original strand, 7819197 - 7819238
Alignment:
Q  266 tacaattagcttaagtgtagtacagttacatcttgtatatat 307  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  7819197 tacaattagcttaagtgtagtacagttacatcttgtatatat 7819238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 167 - 211
Target Start/End: Original strand, 7799150 - 7799194
Alignment:
Q  167 ttattacaccatgagcacaatgcatcgaaagagagtgaaacataa 211  Q
    ||||||||||||| |||||||||||| ||||||||||||||||||    
T  7799150 ttattacaccatgtgcacaatgcatcaaaagagagtgaaacataa 7799194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 167 - 211
Target Start/End: Original strand, 7799300 - 7799344
Alignment:
Q  167 ttattacaccatgagcacaatgcatcgaaagagagtgaaacataa 211  Q
    ||||||||||||| |||||||||||| ||||||||||||||||||    
T  7799300 ttattacaccatgtgcacaatgcatcaaaagagagtgaaacataa 7799344  T

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Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 167 - 210
Target Start/End: Original strand, 7799000 - 7799043
Alignment:
Q  167 ttattacaccatgagcacaatgcatcgaaagagagtgaaacata 210  Q
    ||||||||||||| |||||||||||| |||||||||||||||||    
T  7799000 ttattacaccatgtgcacaatgcatcaaaagagagtgaaacata 7799043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 167 - 210
Target Start/End: Original strand, 7818271 - 7818314
Alignment:
Q  167 ttattacaccatgagcacaatgcatcgaaagagagtgaaacata 210  Q
    ||||||||||||| |||||||||||| |||||||||||||||||    
T  7818271 ttattacaccatgtgcacaatgcatcaaaagagagtgaaacata 7818314  T

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Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 167 - 210
Target Start/End: Original strand, 7818420 - 7818463
Alignment:
Q  167 ttattacaccatgagcacaatgcatcgaaagagagtgaaacata 210  Q
    ||||||||| ||| |||||||||||| |||||||||||||||||    
T  7818420 ttattacacaatgtgcacaatgcatcaaaagagagtgaaacata 7818463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 167 - 210
Target Start/End: Original strand, 7819290 - 7819333
Alignment:
Q  167 ttattacaccatgagcacaatgcatcgaaagagagtgaaacata 210  Q
    ||||||||||||| |||||||||||| ||||||| |||||||||    
T  7819290 ttattacaccatgtgcacaatgcatcaaaagagaatgaaacata 7819333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 361 - 414
Target Start/End: Original strand, 22190796 - 22190850
Alignment:
Q  361 agtttcataatatggtattag-agctctctttgaagagagagtttgttacgatcc 414  Q
    |||||||||||||||||| || |||||||||||||||||||||||||||||||||    
T  22190796 agtttcataatatggtatcagtagctctctttgaagagagagtttgttacgatcc 22190850  T

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