View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13667_high_6 (Length: 383)
Name: NF13667_high_6
Description: NF13667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13667_high_6 |
 | |
|
| [»] chr6 (24 HSPs) |
| |
|
| [»] scaffold0349 (1 HSPs) |
| | |
|
| [»] scaffold0003 (1 HSPs) |
| | |
|
| [»] scaffold0277 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 237; Significance: 1e-131; HSPs: 24)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 127 - 383
Target Start/End: Complemental strand, 26890275 - 26890019
Alignment:
| Q |
127 |
tactacgattgaaattctcataactcttcaactgagctgcaaagcataccgttactcactgccctttagaacaaccgacagattctgtggtgcgagcaac |
226 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
26890275 |
tactacgattgaaattctcataactcttcaactgagctgcaaagcataccgttactcactgccctttagaacaaccgacggattctgtggtgcgaacaac |
26890176 |
T |
|
| Q |
227 |
cactagacatctcccatgacagtaaaaatagccagatgactacagatagtttcctgacaatgtacagtcaaataaaaaataaatgtttagttttggttag |
326 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26890175 |
ctctagacatctcccatgacagtaaaaatagccagatgactacagatagtttcctgacaatgtacagtcaaataaaaaataaatgtttagttttggttag |
26890076 |
T |
|
| Q |
327 |
agaaaagttgcgcaaataaccaacaacaggttgaattcatcggcacttgattcttca |
383 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
26890075 |
agaaaagttgtgcaaataaccaacaacaggctgaattcatcggcacttgattcttca |
26890019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 26890765 - 26890566
Alignment:
| Q |
1 |
attcggtgttgttgctgtgacacaagttctgaccttcatctggtttactctttacatgagcattggtgattatcacatcctccttcgtgcttcctttttt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26890765 |
attcggtgttgttgctgtgacacaagttctgaccttcatctggtt--ctctttacatgagcattggtgattatcacatcctccttcgtgcttcctttttt |
26890668 |
T |
|
| Q |
101 |
cctgaacacattgattccaatttgtgtactacgattgaaattctcataactcttcaactgagctgcaaagcataccgttactcactgccctttagaacaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26890667 |
cctgaacacattgattccaatttgtgtactacgattgaaattctcataactcttcaaatgagctgcaaagcataccgttactcactgccctttagaacaa |
26890568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 23 - 335
Target Start/End: Complemental strand, 26853933 - 26853623
Alignment:
| Q |
23 |
caagttctgaccttcatctggtttactctttacatgagcattggtgattatcacatcctccttcgtgcttccttttttcctgaacacattgattccaatt |
122 |
Q |
| |
|
||||||||||| |||||||| |||||||||| ||| || ||||||| |||||||||||||||||||||||||| ||| |||||| ||| |||||||| |
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|
| T |
26853933 |
caagttctgactttcatctgatttactctttccataagggttggtgaatatcacatcctccttcgtgcttccttcattcttgaacatgttggttccaatt |
26853834 |
T |
|
| Q |
123 |
tgtgtactacgattgaaattctcataactcttcaactgagctgcaaagcataccgttactcactgccctttagaacaaccgacagattctgtggtgcgag |
222 |
Q |
| |
|
||||||||| |||||| |||||| |||||| |||||| ||||||||||||| | |||||||||||||||| ||||| || ||||||| ||||||| | | |
|
|
| T |
26853833 |
tgtgtactaaaattgaatttctcaaaactctacaactgggctgcaaagcatatcattactcactgccctttcgaacagccaacagattttgtggtgtgcg |
26853734 |
T |
|
| Q |
223 |
caaccactagacatctcccatgacagtaaaaatagccagatgactacagatagtttcctgacaatgtacagtcaaataaaaaataaatgtttagttttgg |
322 |
Q |
| |
|
||||| ||||| |||| |||||| | ||||||||||||||| |||||| | | ||||||||| || |||||| || || | ||| |||||||||| |
|
|
| T |
26853733 |
caacccctagatatcttgaatgacaatgcaaatagccagatgaccacagat-ggatactgacaatgcacggtcaaagaacaagt-aattcttagttttgg |
26853636 |
T |
|
| Q |
323 |
ttagagaaaagtt |
335 |
Q |
| |
|
||||||||||||| |
|
|
| T |
26853635 |
ttagagaaaagtt |
26853623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 62 - 343
Target Start/End: Original strand, 27713976 - 27714257
Alignment:
| Q |
62 |
attggtgattatcacatcctccttcgtgcttccttttttcctgaacacattgattccaatttgtgtactacgattgaaattctcataactcttcaactga |
161 |
Q |
| |
|
|||||||| || | ||||||| || |||||||||| || ||||||| | |||||||| |||||||||| |||||||||||||| | | || ||||||| |
|
|
| T |
27713976 |
attggtgaataccgcatcctctctcatgcttcctttcttgttgaacacgtagattccaaattgtgtactaagattgaaattctcaaagcactccaactga |
27714075 |
T |
|
| Q |
162 |
gctgcaaagcataccgttactcactgccctttagaacaaccgacagattctgtggtgcgagcaaccactagacatctcccatgacagtaaaaatagccag |
261 |
Q |
| |
|
||||||||||||| | |||||| ||||||||| |||||||| || ||||||| | || ||||||| |||||| | || ||||||| | |||||||||| |
|
|
| T |
27714076 |
gctgcaaagcatatcattactcgctgccctttcgaacaaccaacggattctgcgctgtaagcaacctctagacttgtcgcatgacaatgcaaatagccag |
27714175 |
T |
|
| Q |
262 |
atgactacagatagtttcctgacaatgtacagtcaaataaaaaataaatgtttagttttggttagagaaaagttgcgcaaat |
343 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||| || || |||| |||||||||||||||||||||||||| |||| |
|
|
| T |
27714176 |
atgactacatgtggtttcctgacaatgtacagtcaaagaacaagaaaatacttagttttggttagagaaaagttgcgtaaat |
27714257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 116 - 369
Target Start/End: Original strand, 27702263 - 27702516
Alignment:
| Q |
116 |
tccaatttgtgtactacgattgaaattctcataactcttcaactgagctgcaaagcataccgttactcactgccctttagaacaaccgacagattctgtg |
215 |
Q |
| |
|
||||| |||||||||| ||| |||||||||| | | || |||||||||||||||||||| | |||||||||| ||||| |||||||| || ||||||||| |
|
|
| T |
27702263 |
tccaaattgtgtactaagatggaaattctcaaagcactccaactgagctgcaaagcatatcattactcactgtcctttcgaacaaccaacggattctgtg |
27702362 |
T |
|
| Q |
216 |
gtgcgagcaaccactagacatctcccatgacagtaaaaatagccagatgactacagatagtttcctgacaatgtacagtcaaataaaaaataaatgttta |
315 |
Q |
| |
|
|| ||||||| |||||| | || ||||||| | ||||||||||||||||||| | |||||||||||||||||||||||| || || |||| ||| |
|
|
| T |
27702363 |
ctgtaagcaacctctagacttgtcgcatgacaatgcaaatagccagatgactacatgtcgtttcctgacaatgtacagtcaaaaaacaagaaaatactta |
27702462 |
T |
|
| Q |
316 |
gttttggttagagaaaagttgcgcaaataaccaacaacaggttgaattcatcgg |
369 |
Q |
| |
|
||||||||||||||||||||||| |||| || |||||||| |||| ||||||| |
|
|
| T |
27702463 |
gttttggttagagaaaagttgcgtaaattacagacaacaggctgaaatcatcgg |
27702516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 185 - 337
Target Start/End: Complemental strand, 26966256 - 26966104
Alignment:
| Q |
185 |
ctgccctttagaacaaccgacagattctgtggtgcgagcaaccactagacatctcccatgacagtaaaaatagccagatgactacagatagtttcctgac |
284 |
Q |
| |
|
||||||||| |||||||| || ||||||||||||| ||||| | |||||||| || ||||||||| |||||||||||||||||||||| || ||||||| |
|
|
| T |
26966256 |
ctgccctttcgaacaaccaacggattctgtggtgcaagcaatctctagacatgtcgcatgacagtgcaaatagccagatgactacagatggtgtcctgac |
26966157 |
T |
|
| Q |
285 |
aatgtacagtcaaataaaaaataaatgtttagttttggttagagaaaagttgc |
337 |
Q |
| |
|
|||||||||||||| || || |||| | |||||||||||| |||||||||||| |
|
|
| T |
26966156 |
aatgtacagtcaaagaacaagtaaaagcttagttttggtttgagaaaagttgc |
26966104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 133 - 383
Target Start/End: Complemental strand, 26628216 - 26627966
Alignment:
| Q |
133 |
gattgaaattctcataactcttcaactgagctgcaaagcataccgttactcactgccctttagaacaaccgacagattctgtggtgcgagcaaccactag |
232 |
Q |
| |
|
|||||||||||||| | | || |||||||| || || ||||| | ||||||||| ||| || ||||| || || |||| ||| |||| ||||||| |||| |
|
|
| T |
26628216 |
gattgaaattctcaaagcactccaactgagatgtaatgcatatcattactcacttcccattcgaacagccaacggattttgttgtgcaagcaacctctag |
26628117 |
T |
|
| Q |
233 |
acatctcccatgacagtaaaaatagccagatgactacagatagtttcctgacaatgtacagtcaaataaaaaataaatgtttagttttggttagagaaaa |
332 |
Q |
| |
|
|||||| ||||||| | | | ||||||||||||| | | |||||||||||||||||||||||| || ||| |||| |||||||||||||||||||| |
|
|
| T |
26628116 |
acatcttgcatgacaatgcagagagccagatgactaaatgtggtttcctgacaatgtacagtcaaagaacaaaaaaatacttagttttggttagagaaaa |
26628017 |
T |
|
| Q |
333 |
gttgcgcaaataaccaacaacaggttgaattcatcggcacttgattcttca |
383 |
Q |
| |
|
|||||| |||| ||| || ||||| |||| ||||||| | | ||||||||| |
|
|
| T |
26628016 |
gttgcgtaaattaccgacgacaggctgaaatcatcgggaatggattcttca |
26627966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 133 - 383
Target Start/End: Complemental strand, 26734193 - 26733943
Alignment:
| Q |
133 |
gattgaaattctcataactcttcaactgagctgcaaagcataccgttactcactgccctttagaacaaccgacagattctgtggtgcgagcaaccactag |
232 |
Q |
| |
|
|||||||||||||| | | || |||||||| || || ||||| | ||||||||| ||| || ||||| || || |||| ||| |||| ||||||| |||| |
|
|
| T |
26734193 |
gattgaaattctcaaagcactccaactgagatgtaatgcatatcattactcacttcccattcgaacagccaacggattttgttgtgcaagcaacctctag |
26734094 |
T |
|
| Q |
233 |
acatctcccatgacagtaaaaatagccagatgactacagatagtttcctgacaatgtacagtcaaataaaaaataaatgtttagttttggttagagaaaa |
332 |
Q |
| |
|
|||||| ||||||| | | | ||||||||||||| | | |||||||||||||||||||||||| || ||| |||| |||||||||||||||||||| |
|
|
| T |
26734093 |
acatcttgcatgacaatgcagagagccagatgactaaatgtggtttcctgacaatgtacagtcaaagaacaaaaaaatacttagttttggttagagaaaa |
26733994 |
T |
|
| Q |
333 |
gttgcgcaaataaccaacaacaggttgaattcatcggcacttgattcttca |
383 |
Q |
| |
|
|||||| |||| ||| || ||||| |||| ||||||| | | ||||||||| |
|
|
| T |
26733993 |
gttgcgtaaattaccgacgacaggctgaaatcatcgggaatggattcttca |
26733943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 166 - 337
Target Start/End: Complemental strand, 26651281 - 26651110
Alignment:
| Q |
166 |
caaagcataccgttactcactgccctttagaacaaccgacagattctgtggtgcgagcaaccactagacatctcccatgacagtaaaaatagccagatga |
265 |
Q |
| |
|
||||||||| | |||||||||||||||| |||||||| ||||||||||||||||||| || | |||||||| || ||||||| | | |||| ||| ||| |
|
|
| T |
26651281 |
caaagcatagcattactcactgccctttcgaacaaccaacagattctgtggtgcgagaaatctctagacatatcgcatgacaatgcacatagacaggtga |
26651182 |
T |
|
| Q |
266 |
ctacagatagtttcctgacaatgtacagtcaaataaaaaataaatgtttagttttggttagagaaaagttgc |
337 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||| || || | ||| |||||||||||| |||||| |||| |
|
|
| T |
26651181 |
ctacagatggtttcctgacaatgtacagacaaagaacaagttaattcgtagttttggttaaagaaaacttgc |
26651110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 166 - 337
Target Start/End: Complemental strand, 26757249 - 26757078
Alignment:
| Q |
166 |
caaagcataccgttactcactgccctttagaacaaccgacagattctgtggtgcgagcaaccactagacatctcccatgacagtaaaaatagccagatga |
265 |
Q |
| |
|
||||||||| | |||||||||||||||| |||||||| ||||||||||||||||||| || | |||||||| || ||||||| | | |||| ||| ||| |
|
|
| T |
26757249 |
caaagcatagcattactcactgccctttcgaacaaccaacagattctgtggtgcgagaaatctctagacatatcgcatgacaatgcacatagacaggtga |
26757150 |
T |
|
| Q |
266 |
ctacagatagtttcctgacaatgtacagtcaaataaaaaataaatgtttagttttggttagagaaaagttgc |
337 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||| || || | ||| |||||||||||| |||||| |||| |
|
|
| T |
26757149 |
ctacagatggtttcctgacaatgtacagacaaagaacaagttaattcgtagttttggttaaagaaaacttgc |
26757078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 207 - 337
Target Start/End: Original strand, 27422508 - 27422638
Alignment:
| Q |
207 |
gattctgtggtgcgagcaaccactagacatctcccatgacagtaaaaatagccagatgactacagatagtttcctgacaatgtacagtcaaataaaaaat |
306 |
Q |
| |
|
|||||| || ||||||||| | |||||||| || ||||||| | |||||||||||||||||||||| ||||||||||||||||||| |||| || || | |
|
|
| T |
27422508 |
gattctatgctgcgagcaatctctagacatgtcgcatgacaatgcaaatagccagatgactacagatggtttcctgacaatgtacagacaaagaacaagt |
27422607 |
T |
|
| Q |
307 |
aaatgtttagttttggttagagaaaagttgc |
337 |
Q |
| |
|
||||| |||||||| |||||||||||||||| |
|
|
| T |
27422608 |
aaatgcttagttttcgttagagaaaagttgc |
27422638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 179 - 335
Target Start/End: Complemental strand, 26828524 - 26828368
Alignment:
| Q |
179 |
tactcactgccctttagaacaaccgacagattctgtggtgcgagcaaccactagacatctcccatgacagtaaaaatagccagatgactacagatagttt |
278 |
Q |
| |
|
|||||| |||||||| || |||| || |||| |||||| ||||||||||||||||||| | ||||||| | ||||||||||| ||||||||| | | |
|
|
| T |
26828524 |
tactcattgccctttcgagcaacaaacggattttgtggtacgagcaaccactagacatcccgcatgacaatgcgaatagccagatcactacagatggact |
26828425 |
T |
|
| Q |
279 |
cctgacaatgtacagtcaaataaaaaataaatgtttagttttggttagagaaaagtt |
335 |
Q |
| |
|
|||||||||||||||||||| || || ||||| |||||||||| |||||||||||| |
|
|
| T |
26828424 |
cctgacaatgtacagtcaaaaaacaagaaaatgcttagttttggatagagaaaagtt |
26828368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 163 - 247
Target Start/End: Complemental strand, 31289490 - 31289406
Alignment:
| Q |
163 |
ctgcaaagcataccgttactcactgccctttagaacaaccgacagattctgtggtgcgagcaaccactagacatctcccatgaca |
247 |
Q |
| |
|
|||||||||||| | |||||||||||||||| |||||||| || ||||||||| |||||||||||||||||||| || ||||||| |
|
|
| T |
31289490 |
ctgcaaagcatagcattactcactgccctttcgaacaaccaacggattctgtgctgcgagcaaccactagacatgtcgcatgaca |
31289406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 113 - 337
Target Start/End: Complemental strand, 26631693 - 26631460
Alignment:
| Q |
113 |
gattccaatttgtgtactacgattgaaattctcataactcttcaac---------tgagctgcaaagcataccgttactcactgccctttagaacaaccg |
203 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |||||| |||| |||||||| ||||||| | |||||||||||||||| |||||| |
|
|
| T |
26631693 |
gattccaatttgtgtactaatattgaaattctcaaaactctgcaaccagtataactgagctgcgaagcatagcattactcactgccctttggaacaagta |
26631594 |
T |
|
| Q |
204 |
a-cagattctgtggtgcgagcaaccactagacatctcccatgacagtaaaaatagccagatgactacagatagtttcctgacaatgtacagtcaaataaa |
302 |
Q |
| |
|
| | ||||||||| ||||||||||| |||||||| | | |||| | || | ||||||||||||||||| | ||||||| |||||||| || || | |
|
|
| T |
26631593 |
aacggattctgtgctgcgagcaacctctagacatgttg-aggacaatgcaagtggccagatgactacagatggcttcctgaaaatgtacattccaagagc |
26631495 |
T |
|
| Q |
303 |
aaataaatgtttagttttggttagagaaaagttgc |
337 |
Q |
| |
|
|| |||||| || |||||||||||||||||||||| |
|
|
| T |
26631494 |
aagtaaatgctttgttttggttagagaaaagttgc |
26631460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 113 - 337
Target Start/End: Complemental strand, 26737668 - 26737435
Alignment:
| Q |
113 |
gattccaatttgtgtactacgattgaaattctcataactcttcaac---------tgagctgcaaagcataccgttactcactgccctttagaacaaccg |
203 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |||||| |||| |||||||| ||||||| | |||||||||||||||| |||||| |
|
|
| T |
26737668 |
gattccaatttgtgtactaatattgaaattctcaaaactctgcaaccagtataactgagctgcgaagcatagcattactcactgccctttggaacaagta |
26737569 |
T |
|
| Q |
204 |
a-cagattctgtggtgcgagcaaccactagacatctcccatgacagtaaaaatagccagatgactacagatagtttcctgacaatgtacagtcaaataaa |
302 |
Q |
| |
|
| | ||||||||| ||||||||||| |||||||| | | |||| | || | ||||||||||||||||| | ||||||| |||||||| || || | |
|
|
| T |
26737568 |
aacggattctgtgctgcgagcaacctctagacatgttg-aggacaatgcaagtggccagatgactacagatggcttcctgaaaatgtacattccaagagc |
26737470 |
T |
|
| Q |
303 |
aaataaatgtttagttttggttagagaaaagttgc |
337 |
Q |
| |
|
|| |||||| || |||||||||||||||||||||| |
|
|
| T |
26737469 |
aagtaaatgctttgttttggttagagaaaagttgc |
26737435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 23 - 289
Target Start/End: Original strand, 27652069 - 27652339
Alignment:
| Q |
23 |
caagttctgaccttcatctggtttactctttacatgagcattggtgattatcacatcctccttcgtgcttccttttttcctgaacacattgattccaatt |
122 |
Q |
| |
|
|||||||||| |||||||| ||| |||||| || || || ||||| |||||||||||| | ||||||| ||||| |||||| | |||||||||| |
|
|
| T |
27652069 |
caagttctgatcttcatcttcttttctctttctataaggataggtgaatatcacatcctcttctgtgcttc---ttttcttgaacatgtggattccaatt |
27652165 |
T |
|
| Q |
123 |
tgtgtactacgattgaaattctcataactcttcaactgagctgcaaagcataccgttactca-------ctgccctttagaacaaccgacagattctgtg |
215 |
Q |
| |
|
||||||||| ||||||||| | | | |||| ||||||||||||||| || | ||| ||| ||||||||| |||||||| | |||| |||| |
|
|
| T |
27652166 |
tgtgtactaagattgaaatcttaaaacctctcaaactgagctgcaaagaatgtcattattcattagtcactgccctttggaacaaccaatggattttgtg |
27652265 |
T |
|
| Q |
216 |
gtgcgagcaaccactagacatctcccatgacagtaaaaatagccagatgactacagatagtttcctgacaatgt |
289 |
Q |
| |
|
|||||||||| |||||||| || ||||||| | ||||||||||||||| | |||| ||||||||||||||| |
|
|
| T |
27652266 |
gtgcgagcaatgtctagacatatcacatgacaatgcaaatagccagatgaccatagatggtttcctgacaatgt |
27652339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 253 - 333
Target Start/End: Complemental strand, 26640758 - 26640678
Alignment:
| Q |
253 |
aatagccagatgactacagatagtttcctgacaatgtacagtcaaataaaaaataaatgtttagttttggttagagaaaag |
333 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||||||||||||||| || | |||||| |||||||||| |||||||||| |
|
|
| T |
26640758 |
aatagccagatcactacagatggtttcctgacaatgtacagtcaaagaactagtaaatgcttagttttggatagagaaaag |
26640678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 253 - 333
Target Start/End: Complemental strand, 26746724 - 26746644
Alignment:
| Q |
253 |
aatagccagatgactacagatagtttcctgacaatgtacagtcaaataaaaaataaatgtttagttttggttagagaaaag |
333 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||||||||||||||| || | |||||| |||||||||| |||||||||| |
|
|
| T |
26746724 |
aatagccagatcactacagatggtttcctgacaatgtacagtcaaagaactagtaaatgcttagttttggatagagaaaag |
26746644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 251 - 367
Target Start/End: Complemental strand, 31291462 - 31291346
Alignment:
| Q |
251 |
aaaatagccagatgactacagatagtttcctgacaatgtacagtcaaataaaaaataaatgtttagttttggttagagaaaagttgcgcaaataaccaac |
350 |
Q |
| |
|
||||||||||||||| ||||||| |||||||| |||| ||| || || || || |||| |||||||| ||||||||||||||||| |||| ||| || |
|
|
| T |
31291462 |
aaaatagccagatgattacagatggtttcctggcaattcacaatcgaagaacaagaaaatacttagtttttgttagagaaaagttgcgtaaattaccgac |
31291363 |
T |
|
| Q |
351 |
aacaggttgaattcatc |
367 |
Q |
| |
|
||||| |||||||||| |
|
|
| T |
31291362 |
tacaggctgaattcatc |
31291346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 275 - 338
Target Start/End: Original strand, 27652343 - 27652406
Alignment:
| Q |
275 |
gtttcctgacaatgtacagtcaaataaaaaataaatgtttagttttggttagagaaaagttgcg |
338 |
Q |
| |
|
|||||||||||||||| |||||| || || |||||| |||||||||||||||||||||||||| |
|
|
| T |
27652343 |
gtttcctgacaatgtaaagtcaatgaacaagtaaatgcttagttttggttagagaaaagttgcg |
27652406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 162
Target Start/End: Complemental strand, 26828573 - 26828527
Alignment:
| Q |
116 |
tccaatttgtgtactacgattgaaattctcataactcttcaactgag |
162 |
Q |
| |
|
|||||||||| ||||| |||||||||||| | ||||||||||||||| |
|
|
| T |
26828573 |
tccaatttgtatactaagattgaaattctgaaaactcttcaactgag |
26828527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 329
Target Start/End: Complemental strand, 26964411 - 26964361
Alignment:
| Q |
279 |
cctgacaatgtacagtcaaataaaaaataaatgtttagttttggttagaga |
329 |
Q |
| |
|
||||||||||||||| |||| ||||| ||||| | |||||||||||||||| |
|
|
| T |
26964411 |
cctgacaatgtacagacaaagaaaaagtaaatttgtagttttggttagaga |
26964361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 297
Target Start/End: Complemental strand, 26807333 - 26807293
Alignment:
| Q |
257 |
gccagatgactacagatagtttcctgacaatgtacagtcaa |
297 |
Q |
| |
|
|||||| |||||||||| |||||||||||| |||||||||| |
|
|
| T |
26807333 |
gccagacgactacagatggtttcctgacaaagtacagtcaa |
26807293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 239
Target Start/End: Original strand, 27586671 - 27586755
Alignment:
| Q |
155 |
caactgagctgcaaagcataccgttactcactgccctttagaacaaccgacagattctgtggtgcgagcaaccactagacatctc |
239 |
Q |
| |
|
||||||| ||||||||||| | |||||||||||| ||| ||||| | |||||||||||||| |||| ||| |||||||||| |
|
|
| T |
27586671 |
caactgaattgcaaagcatatcattactcactgccatttcaaacaagccacagattctgtggtttgagccacctatagacatctc |
27586755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0349 (Bit Score: 106; Significance: 6e-53; HSPs: 1)
Name: scaffold0349
Description:
Target: scaffold0349; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 62 - 343
Target Start/End: Complemental strand, 17968 - 17687
Alignment:
| Q |
62 |
attggtgattatcacatcctccttcgtgcttccttttttcctgaacacattgattccaatttgtgtactacgattgaaattctcataactcttcaactga |
161 |
Q |
| |
|
|||||||| || | ||||||| || |||||||||| || ||||||| | |||||||| |||||||||| |||||||||||||| | | || ||||||| |
|
|
| T |
17968 |
attggtgaataccgcatcctctctcatgcttcctttcttgttgaacacgtagattccaaattgtgtactaagattgaaattctcaaagcactccaactga |
17869 |
T |
|
| Q |
162 |
gctgcaaagcataccgttactcactgccctttagaacaaccgacagattctgtggtgcgagcaaccactagacatctcccatgacagtaaaaatagccag |
261 |
Q |
| |
|
||||||||||||| | |||||| ||||||||| |||||||| || ||||||| | || ||||||| |||||| | || ||||||| | |||||||||| |
|
|
| T |
17868 |
gctgcaaagcatatcattactcgctgccctttcgaacaaccaacggattctgcgctgtaagcaacctctagacttgtcgcatgacaatgcaaatagccag |
17769 |
T |
|
| Q |
262 |
atgactacagatagtttcctgacaatgtacagtcaaataaaaaataaatgtttagttttggttagagaaaagttgcgcaaat |
343 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||| || || |||| |||||||||||||||||||||||||| |||| |
|
|
| T |
17768 |
atgactacatgtggtttcctgacaatgtacagtcaaagaacaagaaaatacttagttttggttagagaaaagttgcgtaaat |
17687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 62 - 343
Target Start/End: Original strand, 29269869 - 29270150
Alignment:
| Q |
62 |
attggtgattatcacatcctccttcgtgcttccttttttcctgaacacattgattccaatttgtgtactacgattgaaattctcataactcttcaactga |
161 |
Q |
| |
|
|||||||| || | ||||||| || |||||||||| || ||||||| | |||||||| |||||||||| ||| ||||||| || | | || ||||||| |
|
|
| T |
29269869 |
attggtgaataccgcatcctctctcatgcttcctttcttattgaacacgtagattccaaattgtgtactaagatggaaattcacaaagcactccaactga |
29269968 |
T |
|
| Q |
162 |
gctgcaaagcataccgttactcactgccctttagaacaaccgacagattctgtggtgcgagcaaccactagacatctcccatgacagtaaaaatagccag |
261 |
Q |
| |
|
||||||||||||| | |||||||||||||||| ||||||| || |||| |||| || |||||||| |||||| | || ||||||| | |||||||||| |
|
|
| T |
29269969 |
gctgcaaagcatatcattactcactgccctttcgaacaacaaacggattatgtgctgtgagcaacctctagacttgtcgcatgacaatgcaaatagccag |
29270068 |
T |
|
| Q |
262 |
atgactacagatagtttcctgacaatgtacagtcaaataaaaaataaatgtttagttttggttagagaaaagttgcgcaaat |
343 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||| || || |||| |||||||||||||||||||||||||| |||| |
|
|
| T |
29270069 |
atgactacatgtggtttcctgacaatgtacagtcaaagaacaagaaaatacttagttttggttagagaaaagttgcgtaaat |
29270150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 207 - 337
Target Start/End: Complemental strand, 64855 - 64725
Alignment:
| Q |
207 |
gattctgtggtgcgagcaaccactagacatctcccatgacagtaaaaatagccagatgactacagatagtttcctgacaatgtacagtcaaataaaaaat |
306 |
Q |
| |
|
|||||| || ||||||||| | |||||||| || ||||||| | |||||||||||||||||||||| ||||||||||||||||||| |||| || || | |
|
|
| T |
64855 |
gattctatgctgcgagcaatctctagacatgtcgcatgacaatgcaaatagccagatgactacagatggtttcctgacaatgtacagacaaagaacaagt |
64756 |
T |
|
| Q |
307 |
aaatgtttagttttggttagagaaaagttgc |
337 |
Q |
| |
|
||||| |||||||| |||||||||||||||| |
|
|
| T |
64755 |
aaatgcttagttttcgttagagaaaagttgc |
64725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 7e-28; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 23 - 213
Target Start/End: Original strand, 18692271 - 18692462
Alignment:
| Q |
23 |
caagttctgaccttcatctggtttactctttacatgagcattggtgattatcacatcctccttcgtgcttccttttttcctgaacacattg-attccaat |
121 |
Q |
| |
|
||||||||| ||||||||| ||| |||||| || || |||| ||| ||||||||||| || | ||||| ||| ||| |||||||| || |||| ||| |
|
|
| T |
18692271 |
caagttctgttcttcatctgattttctctttctataaggattgatgaatatcacatcctgctccatgctttttttcttcttgaacacagtggattctaat |
18692370 |
T |
|
| Q |
122 |
ttgtgtactacgattgaaattctcataactcttcaactgagctgcaaagcataccgttactcactgccctttagaacaaccgacagattctg |
213 |
Q |
| |
|
|||| ||||| |||||||||||||| |||||| |||||||| ||||||||||| | ||||||||||||||| |||||||| || ||||||| |
|
|
| T |
18692371 |
ttgtctactaagattgaaattctcaaaactctccaactgaggtgcaaagcatatcaatactcactgccctttcgaacaaccaacggattctg |
18692462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 155 - 351
Target Start/End: Complemental strand, 5083269 - 5083071
Alignment:
| Q |
155 |
caactgagctgcaaagcataccgttactcactgccctttagaacaaccgacagattctgtggtgcgagcaaccactagacatctcccatgacagtaaaaa |
254 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||||||| ||||| | || |||||||||| |||| ||| ||||||||||| |||||| | ||| |
|
|
| T |
5083269 |
caactgagctgcaaagcatatcattactcactgccctttcaaacaatccacggattctgtggattgagccacctctagacatctcgtatgacaatgcaaa |
5083170 |
T |
|
| Q |
255 |
tagccagatgactacagatagtttcctgacaatgtacagtcaaataaaaaataaatgtttagttt-tggtt-agagaaaagttgcgcaaataaccaaca |
351 |
Q |
| |
|
||||||| ||||||||| |||| ||| ||||||||||| ||| || |||| |||| ||||||| | ||| ||||||||||||| |||| ||||||| |
|
|
| T |
5083169 |
aagccagacaactacagatggttttctgtcaatgtacagtaaaagaagaaatgaatgcttagtttatagttaagagaaaagttgcaaaaattaccaaca |
5083071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 113 - 164
Target Start/End: Original strand, 18674282 - 18674333
Alignment:
| Q |
113 |
gattccaatttgtgtactacgattgaaattctcataactcttcaactgagct |
164 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||| |||||| |||||||||| |
|
|
| T |
18674282 |
gattccaatttgtctactaagattgaaattctcaaaactctccaactgagct |
18674333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 352
Target Start/End: Original strand, 18674446 - 18674490
Alignment:
| Q |
308 |
aatgtttagttttggttagagaaaagttgcgcaaataaccaacaa |
352 |
Q |
| |
|
|||| |||||||||||||||||||||||| | |||| |||||||| |
|
|
| T |
18674446 |
aatgcttagttttggttagagaaaagttgtgtaaattaccaacaa |
18674490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 223
Target Start/End: Original strand, 18718903 - 18718971
Alignment:
| Q |
155 |
caactgagctgcaaagcataccgttactcactgccctttagaacaaccgacagattctgtggtgcgagc |
223 |
Q |
| |
|
|||||||| ||||||||||| | |||||||||||| || |||||||| ||||| |||| |||||||| |
|
|
| T |
18718903 |
caactgaggtgcaaagcatatcaatactcactgcccgttcgaacaaccaacagaatctgcagtgcgagc |
18718971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 71 - 143
Target Start/End: Original strand, 17989856 - 17989928
Alignment:
| Q |
71 |
tatcacatcctccttcgtgcttccttttttcctgaacacattgattccaatttgtgtactacgattgaaattc |
143 |
Q |
| |
|
|||||||||||||||||||||| ||| || ||||||||| |||||| |||||||||||| ||||| ||||| |
|
|
| T |
17989856 |
tatcacatcctccttcgtgcttgttttcttattgaacacatggattcccatttgtgtactaagattggaattc |
17989928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0277 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0277
Description:
Target: scaffold0277; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 298
Target Start/End: Original strand, 829 - 871
Alignment:
| Q |
256 |
agccagatgactacagatagtttcctgacaatgtacagtcaaa |
298 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||||| |||||| |
|
|
| T |
829 |
agccagacgactacagatggtttcctgacaatgtactgtcaaa |
871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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