View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13667_low_1 (Length: 918)
Name: NF13667_low_1
Description: NF13667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13667_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-165; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 551 - 886
Target Start/End: Original strand, 3144802 - 3145143
Alignment:
| Q |
551 |
ctgaatataaaccgaaatagttttggtgtttgatgagtcactgctagtaaccgcttgattcttctatgcatgtttggtatcacttgaatcacggtgaaca |
650 |
Q |
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| T |
3144802 |
ctgaatataaaccgaaatagttttggtgtttgatgagtcactgctagtaaccgcttgattcttctatgcatgtttggtatcacttaaatcacggtgaaca |
3144901 |
T |
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| Q |
651 |
accgtgattttgcagaagctacggggtggttcaccttgattctaacaaactgataatgataccaaaacatatacaaaacaatgttttaaaaaccaaacat |
750 |
Q |
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| T |
3144902 |
accgtgattttgcagaagctacggggtggttcaccttgattctaacaaactgataatgatacaaaaacatatacaaaacaatgttttaaaaaccaaacat |
3145001 |
T |
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| Q |
751 |
ggtaccatgttaggttgctggtatcacggtgactagccgtgcttttgcaaaagctataaggcgattcg------tcctgacaatcattgtgatgcaaaac |
844 |
Q |
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| T |
3145002 |
ggtaccatgttaggttgctggtatcacggtgactagctgtgcttttgcaaaagctataaggcgattcgtagtgattctgacaatcattttgatgcaaaac |
3145101 |
T |
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| Q |
845 |
atgcacaaaacattgtttgtaaaaaccaaacctagcacacat |
886 |
Q |
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| T |
3145102 |
atgcacaaaacattgtttgtaaaaaccaaacctaacacacat |
3145143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 190; E-Value: 1e-102
Query Start/End: Original strand, 16 - 213
Target Start/End: Original strand, 3144304 - 3144501
Alignment:
| Q |
16 |
gaccacagagtacagacctctctcattcactcttttgagatttgcgccccaaccataatcttaactcatcttggacttggttttaagcaaataaggcggc |
115 |
Q |
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| T |
3144304 |
gaccacagagtacagacctctctcattcactcttttgagatttgcgccccaaccataatcttaactcatcttggacttagttttaagcaaataaggcggc |
3144403 |
T |
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| Q |
116 |
gaccattactctctcttcttcactttctctattatttctgacttcattcaccaactaacattattaactgcattcatttccttcattaccttaacacg |
213 |
Q |
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| T |
3144404 |
gaccattactctctcttcttcactttctctattatttctgacttcattcaccaacttacattattaactgcattcatttccttcattaccttaacacg |
3144501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 344 - 408
Target Start/End: Original strand, 3144630 - 3144694
Alignment:
| Q |
344 |
tgaagtttatgaagttgggttcaaagcctgatgcacttcaatctgatggcaagtttgtcaggtta |
408 |
Q |
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| T |
3144630 |
tgaagtttatgaagttgggttcaaagcctgatgcacttcaatctgatggcaagtttgtcaggtta |
3144694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 288 - 325
Target Start/End: Original strand, 3144575 - 3144612
Alignment:
| Q |
288 |
aacatacgtgaccctactttctttgtttggttttcaag |
325 |
Q |
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| T |
3144575 |
aacatacgtgatcctactttctttgtttggttttcaag |
3144612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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