View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13667_low_15 (Length: 239)

Name: NF13667_low_15
Description: NF13667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13667_low_15
NF13667_low_15
[»] chr3 (2 HSPs)
chr3 (11-89)||(8522320-8522398)
chr3 (184-217)||(8522163-8522196)
[»] chr6 (1 HSPs)
chr6 (21-92)||(25523842-25523913)
[»] chr5 (3 HSPs)
chr5 (11-76)||(42116959-42117024)
chr5 (63-92)||(42122700-42122729)
chr5 (63-92)||(42128095-42128124)
[»] chr4 (1 HSPs)
chr4 (63-92)||(11117357-11117386)


Alignment Details
Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 11 - 89
Target Start/End: Complemental strand, 8522398 - 8522320
Alignment:
Q  11 gagtgagatgaaggacaagaatgacgaggaaccatggttcaaccatgaatcagaatcagaatcagatggtgcaaatgtc 89  Q
    |||||| | |||||||||||||||||||||||||  |||||| || |||||||||||||||||||||||||||||||||    
T  8522398 gagtgaaaagaaggacaagaatgacgaggaaccaaagttcaatcacgaatcagaatcagaatcagatggtgcaaatgtc 8522320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 217
Target Start/End: Complemental strand, 8522196 - 8522163
Alignment:
Q  184 tgtttataagtgcatgccacaagatgtgttatat 217  Q
    ||||||||||||||||||||||| ||||||||||    
T  8522196 tgtttataagtgcatgccacaagttgtgttatat 8522163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 21 - 92
Target Start/End: Original strand, 25523842 - 25523913
Alignment:
Q  21 aaggacaagaatgacgaggaaccatggttcaaccatgaatcagaatcagaatcagatggtgcaaatgtcata 92  Q
    |||||||||||||| |||||| |||||| || |||||||||||||||||||||||||| |||||||||||||    
T  25523842 aaggacaagaatgaggaggaatcatggtacagccatgaatcagaatcagaatcagatgatgcaaatgtcata 25523913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 42117024 - 42116959
Alignment:
Q  11 gagtgagatgaaggacaagaatgacgaggaaccatggttcaaccatgaatcagaatcagaatcaga 76  Q
    |||||| | |||| ||||||||||  |||||||||||| |||||||||||||||||||||||||||    
T  42117024 gagtgaaaagaagaacaagaatgagaaggaaccatggtacaaccatgaatcagaatcagaatcaga 42116959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 92
Target Start/End: Complemental strand, 42122729 - 42122700
Alignment:
Q  63 gaatcagaatcagatggtgcaaatgtcata 92  Q
    ||||||||||||||||||||||||||||||    
T  42122729 gaatcagaatcagatggtgcaaatgtcata 42122700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 92
Target Start/End: Complemental strand, 42128124 - 42128095
Alignment:
Q  63 gaatcagaatcagatggtgcaaatgtcata 92  Q
    ||||||||||||||||||||||||||||||    
T  42128124 gaatcagaatcagatggtgcaaatgtcata 42128095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 92
Target Start/End: Complemental strand, 11117386 - 11117357
Alignment:
Q  63 gaatcagaatcagatggtgcaaatgtcata 92  Q
    ||||||||||||||||||||||||||||||    
T  11117386 gaatcagaatcagatggtgcaaatgtcata 11117357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University