View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13667_low_18 (Length: 234)
Name: NF13667_low_18
Description: NF13667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13667_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 162; Significance: 1e-86; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 17 - 186
Target Start/End: Original strand, 12344481 - 12344650
Alignment:
| Q |
17 |
actaactttggtggaaaatcggtttttggtgaattcatagcgcaacctttctatctcatcacgttcttgttgagttccagcatttggatcgaattcccag |
116 |
Q |
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| T |
12344481 |
actaactttggtggaaaatcggtttttggtgaattcatagcgcaacctttcaatctcatcacgttcttgttgagttccagcatttggatcgaattcccag |
12344580 |
T |
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| Q |
117 |
tgttgacgtccaatgaaattgttccttgaaatcaacctttctccaccttctgctatcttcaacttccaca |
186 |
Q |
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| T |
12344581 |
tgttgacgtccaatgaaattgttccctgaaatcaacctttctccaccttctgctatcttcaacttccaca |
12344650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 23 - 186
Target Start/End: Original strand, 12308752 - 12308915
Alignment:
| Q |
23 |
tttggtggaaaatcggtttttggtgaattcatagcgcaacctttctatctcatcacgttcttgttgagttccagcatttggatcgaattcccagtgttga |
122 |
Q |
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| T |
12308752 |
tttgttggaaaatcgatttttggtgaattcatgtcgtagcctttctatctcatcacgttcttgttgagttccagcatttggatcgaattcccaatgttga |
12308851 |
T |
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| Q |
123 |
cgtccaatgaaattgttccttgaaatcaacctttctccaccttctgctatcttcaacttccaca |
186 |
Q |
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| T |
12308852 |
cgtcctatgaaattgtttaaggaaatcaacctttctccaccttctcctatcttcaacttccaca |
12308915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 23 - 186
Target Start/End: Original strand, 35189048 - 35189211
Alignment:
| Q |
23 |
tttggtggaaaatcggtttttggtgaattcatagcgcaacctttctatctcatcacgttcttgttgagttccagcatttggatcgaattcccagtgttga |
122 |
Q |
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| T |
35189048 |
tttgatggagaatctgtttttggtgaattgaatgcgtagcctttcaatctcagcatgttcttctggtgttcctgcatttggatcaaattcccagtgttga |
35189147 |
T |
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| Q |
123 |
cgtccaatgaaattgttccttgaaatcaacctttctccaccttctgctatcttcaacttccaca |
186 |
Q |
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||||| || || || ||| |||||||||| |||||| ||||||||||||||||||||||||| |
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| T |
35189148 |
cgtcctataaagttattcacagaaatcaacccttctcctccttctgctatcttcaacttccaca |
35189211 |
T |
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