View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13667_low_3 (Length: 583)
Name: NF13667_low_3
Description: NF13667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13667_low_3 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 296 - 583
Target Start/End: Complemental strand, 3760653 - 3760367
Alignment:
| Q |
296 |
caaacctattcttgtcagtaagtttccattggaatgctttatcatgatcgagaaaattaacgtatcccaacaacactttcttttgatcataacaatcaaa |
395 |
Q |
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| T |
3760653 |
caaacctattcttgtcagtaagtttccattggaatgctttatcatgatcgagaaaattaacgtatcccaacaacactttcttttgatcataacaatcaaa |
3760554 |
T |
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| Q |
396 |
gtaccccatttactcttctttctatcatattcttgatcatttcnnnnnnntagcagattctatgacaactacaaaaatacacaatacacatacaccaaga |
495 |
Q |
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| T |
3760553 |
gtaccccatttactcttctttctatcatattcttgatcatttcaaaaaaatagcagattctatgacaactacaaaaatacacaatacacatacaccaaga |
3760454 |
T |
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| Q |
496 |
cacgtacacatttcaatgaaaaacatcgctttaccaaatgagaggctttagattagttatatgttctcacctccacatgatttagcaa |
583 |
Q |
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| T |
3760453 |
cacgtacacatttcaatgaaaaacatcgctttacc-aataagaggctttagattagttatatgttctcacctccacataatttagcaa |
3760367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 22 - 264
Target Start/End: Complemental strand, 3760930 - 3760685
Alignment:
| Q |
22 |
gtccggtctaggtcaagaacaagtggtagcaca--atctgcaagttaatggggatatgtaaatttcaaaataggaacaagaatttagaatgnnnnnnnnt |
119 |
Q |
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| T |
3760930 |
gtccggtctaggtcaagaacaagtggtagcacacaatctgcaagttaatggggatatgtaaatttcaaaataggaacaagaatttagaatgaaaaaaaat |
3760831 |
T |
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| Q |
120 |
aaagaaagagataaagcaaaagctttagtcttggatcactttctctattctcattttcccatggatgaagatctgcctttgcctttaccatcagcatcaa |
219 |
Q |
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| T |
3760830 |
aaagaaagagataaagcaaaagctttagtcttggatcactttctctattctcattttcccatggatgaagatctgcctttgcctttaccatcagcatcaa |
3760731 |
T |
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| Q |
220 |
acccttctcactcagtttgcttgtga-ttgccatctcgaatctctc |
264 |
Q |
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| T |
3760730 |
acccttctcactcagtttgcttgtgatttgccatctcgaatctctc |
3760685 |
T |
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