View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13667_low_5 (Length: 421)
Name: NF13667_low_5
Description: NF13667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13667_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 410
Target Start/End: Complemental strand, 1155446 - 1155017
Alignment:
| Q |
1 |
attgcagttctaaccggtgcgacgaagaatgtgaagatcaatggcggcgagatcgagaaagagaagaagatctatcgtattcaagtttccaagactaaga |
100 |
Q |
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| T |
1155446 |
attgcagttctaaccggtgcgacgaagaatgtgaagatcaatggcggcgagatcgagaaagagaagaagatctatcgtattcaagtttccaagactaaga |
1155347 |
T |
|
| Q |
101 |
agcctctcttcttctaccttaacatcgctaaggtaattaggttttcgattttgattcaatcgctttttcttcatttcgnnnnnnnnatttctgattatga |
200 |
Q |
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| T |
1155346 |
agccactcttcttctaccttaacatcgctaaggtaattaggttttcgattttgattaaatcgccgtttcttcatttcgtttttttcatttctgattatgg |
1155247 |
T |
|
| Q |
201 |
atttcgtgtttctttctgattcagaaacacttgaagctggataatgatgttgagctctgtgctttgggaactggtataattttctttaatcctttta--- |
297 |
Q |
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| T |
1155246 |
atttcgtgtttctttctgattcagaaacacttgaagctggataatgatgttgagctctgtgctttgggaactggtataattttctttaatccttttaaga |
1155147 |
T |
|
| Q |
298 |
---------ctttctttgattctgattaggtttaagc---------gattatgtaattgataagctgaaattttaagataaaaactcctttacttgattc |
379 |
Q |
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|||| ||||||||| || ||||||||| |||||||||||| |||||||||| |||| ||||||||||||||||||||||||| |
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| T |
1155146 |
taaaaactcctttacttgattctg-ttcggtttaagcgttgttcttgattatgtaattaataagctgaattttttagataaaaactcctttacttgattc |
1155048 |
T |
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| Q |
380 |
tgttcggtttaagcgttgttcttgatgatgt |
410 |
Q |
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| T |
1155047 |
tgttcggtttaagcgttgttcttgattatgt |
1155017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 326 - 410
Target Start/End: Complemental strand, 1155024 - 1154939
Alignment:
| Q |
326 |
gattatgtaattgataagctgaaattttaagataaaaactcctttacttgattctg-ttcggtttaagcgttgttcttgatgatgt |
410 |
Q |
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| T |
1155024 |
gattatgtaattgataagctgaaattttgagataaaaactcatttacttgattctgattcggtttaagcgttgttcttgattatgt |
1154939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 326 - 366
Target Start/End: Complemental strand, 1154946 - 1154906
Alignment:
| Q |
326 |
gattatgtaattgataagctgaaattttaagataaaaactc |
366 |
Q |
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| T |
1154946 |
gattatgtaactgataagctgaaattttagggtaaaaactc |
1154906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 206 - 272
Target Start/End: Original strand, 38664985 - 38665051
Alignment:
| Q |
206 |
gtgtttctttctgattcagaaacacttgaagctggataatgatgttgagctctgtgctttgggaact |
272 |
Q |
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| T |
38664985 |
gtgtttctttctgattcagaaacacttgaagctggataatgatgttgagctctatgctttgggaact |
38665051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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