View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13667_low_8 (Length: 370)
Name: NF13667_low_8
Description: NF13667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13667_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 52584028 - 52583660
Alignment:
| Q |
1 |
aagttgtttcatgggagtagaacaggtgctagaacactctcctctgagctcaaagcagagttgaggattcatggacatttattggctgacaaacatgaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52584028 |
aagttgtttcatgggagtagaacaggtgctagaacactctcctctgagctcaaagcagagttgaggattcatggacatttattggctgacaaacatgaac |
52583929 |
T |
|
| Q |
101 |
atcaagtcaaaattgcaaagctcatttcattgttggatgaggttggttggtcttct-----cttcctgattttatgttcactagtactaataaagaaaat |
195 |
Q |
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| T |
52583928 |
atcaagtcaaaattgcaaagctcatttcattgttggatgaggttggttggtcttctcttctcttcctgattttatgttcactagtactaataaagaaaat |
52583829 |
T |
|
| Q |
196 |
tgcatcatacttgagtagtattcg------------aattaagtgctagagtttatcaaataagtgtttatgtataaattatttttaaaacaaaaatcaa |
283 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52583828 |
tgcatcatacttgagtagtattcgaataaaaagcttaattaagtgctagagtttatcaaataagtgtttatgtataaattatttttaaaacaaaaatcaa |
52583729 |
T |
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| Q |
284 |
attgttttggtatgaactatataaatgttttcataagctatctttgagaatttatagacatggtataag |
352 |
Q |
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| T |
52583728 |
attgttttggtatgaactatataaatgttttcataagctatctttgagaatttatagacatggtataag |
52583660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 335
Target Start/End: Complemental strand, 19395216 - 19395153
Alignment:
| Q |
271 |
aaacaaaaatcaaattgttttggtatgaactatataaatgttttcataagctatctttgagaatt |
335 |
Q |
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| T |
19395216 |
aaacgaaaatcaaattgtttttgtataagctata-aaatgttttcattagctatcttggagaatt |
19395153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 278
Target Start/End: Original strand, 38033892 - 38033934
Alignment:
| Q |
236 |
ttatcaaataagtgtttatgtataaattatttttaaaacaaaa |
278 |
Q |
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||||||||||||||||||||||||| |||||| || ||||||| |
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| T |
38033892 |
ttatcaaataagtgtttatgtataagttatttatataacaaaa |
38033934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 278
Target Start/End: Original strand, 43133890 - 43133932
Alignment:
| Q |
236 |
ttatcaaataagtgtttatgtataaattatttttaaaacaaaa |
278 |
Q |
| |
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|||||| |||||| |||||||||||||||||| |||||||||| |
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| T |
43133890 |
ttatcacataagtatttatgtataaattatttctaaaacaaaa |
43133932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 279
Target Start/End: Original strand, 5939015 - 5939051
Alignment:
| Q |
243 |
ataagtgtttatgtataaattatttttaaaacaaaaa |
279 |
Q |
| |
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|||||||||||||||||| ||||||||| |||||||| |
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|
| T |
5939015 |
ataagtgtttatgtataagttatttttataacaaaaa |
5939051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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