View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13668_high_4 (Length: 288)
Name: NF13668_high_4
Description: NF13668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13668_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 35603129 - 35602867
Alignment:
| Q |
1 |
ccacatattccatgtgactatattgttgtatattgtgagaaacttccggaaacccatatgcacactttctttctttgtcataaggctttgaattgttttg |
100 |
Q |
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| T |
35603129 |
ccacatatgccatgtgacaatgtttgtgtatcttctgagaaacttgtggaaacccatatgcacactttctttctttgtcataaggctttgaattgttttg |
35603030 |
T |
|
| Q |
101 |
taaaaatgggattgataatatcgttcggtagctacttctcagtgttaacattttctctgatatgctttttgatttgcttgataggttatcatcccaacaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
35603029 |
taaaaatgggattgataatatcgttcggtagctacttctcagtgttaacattttctctgatatgctttttgatttgcttgataggttatcatcccaacca |
35602930 |
T |
|
| Q |
201 |
caaccattgactgtgatgatttcatggagtttgtggaagagtcgaaacactaagttgtgagaagcctataac |
272 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |
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| T |
35602929 |
caaccattgactgtgatgatttcatggagtttgt---------gaaacactaagttgtgagaagcctctaac |
35602867 |
T |
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