View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13668_low_1 (Length: 544)
Name: NF13668_low_1
Description: NF13668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13668_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 173 - 525
Target Start/End: Original strand, 35246686 - 35247045
Alignment:
| Q |
173 |
acatacatactcagctagagagttgatagtaatcagtaatggcttgattcaaccaattagaacaaatactat-ggggcttatagtcattctgttctcctc |
271 |
Q |
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|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||| |
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| T |
35246686 |
acatacatactcagcttgagagttgatagtaatcagtaattgcttgattcaaccaattagaacaagtactatgggggcttataatcattctgttctcctc |
35246785 |
T |
|
| Q |
272 |
aaatagcctcgagtttggtgaaatattggctgctattatgaacttgnnnnnnnntccgaaagccgtttatggagaacaatgagtgagttgtgttcttcta |
371 |
Q |
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||||||||||||||||||||||| |||||||||| |||||||||| || | ||||||||| ||||||| ||||||||||||||||||||| |
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| T |
35246786 |
aaatagcctcgagtttggtgaaaatttggctgctagtatgaacttgaaaaaacatcatatggccgtttatagagaacagtgagtgagttgtgttcttcta |
35246885 |
T |
|
| Q |
372 |
tggacgaatgtgaatgattcaaggaaatggaacgaccaattcg------aaggagagtgaacaatgttgaaagaaacaagggagagaaactgaagaagca |
465 |
Q |
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||||||| |||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
35246886 |
cggacgaacgtgaatgattcaaggaaatggaacgaccaattcgaagggaaaggaaagtgaaaaatgttgaaagaaacaagggagagaaactgaagaagcc |
35246985 |
T |
|
| Q |
466 |
aataaaagtgtgaaaatgacgtaaaggtcggtagtaacaaaatcaagggaaacatagaat |
525 |
Q |
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||||||||||||||||||| ||||||||| |||||||||| ||||| ||||||||||||| |
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| T |
35246986 |
aataaaagtgtgaaaatgaagtaaaggtcagtagtaacaagatcaaaggaaacatagaat |
35247045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 17 - 168
Target Start/End: Original strand, 47805187 - 47805338
Alignment:
| Q |
17 |
catagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaataggtttttcacttgtatatatagaatacctttacactcttgt |
116 |
Q |
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| T |
47805187 |
catagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaataggttttttacttgtatatatagaatacctttacactcttgt |
47805286 |
T |
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| Q |
117 |
aataaagatttggaaagaaataaaatgagacctactctatcagtttgacaaa |
168 |
Q |
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||| ||||||||||||||||||||||||||||||| ||||||||| ||||| |
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| T |
47805287 |
aatgtagatttggaaagaaataaaatgagacctactgtatcagtttaacaaa |
47805338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 17 - 162
Target Start/End: Original strand, 47800605 - 47800750
Alignment:
| Q |
17 |
catagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaataggtttttcacttgtatatatagaatacctttacactcttgt |
116 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
47800605 |
catagggatttgatttgtaatcaaaaataatttaccattatttcaatctagtaaaaataggttttttacttgtatatatagaatacctttacactcttgt |
47800704 |
T |
|
| Q |
117 |
aataaagatttggaaagaaataaaatgagacctactctatcagttt |
162 |
Q |
| |
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||| ||||||||||||||||||||||||||||||| ||||||||| |
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| T |
47800705 |
aatgtagatttggaaagaaataaaatgagacctactgtatcagttt |
47800750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 134; Significance: 2e-69; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 17 - 166
Target Start/End: Original strand, 21260034 - 21260183
Alignment:
| Q |
17 |
catagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaataggtttttcacttgtatatatagaatacctttacactcttgt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
21260034 |
catagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaataggttttttacttgtatatatagaatacctttacactcttgt |
21260133 |
T |
|
| Q |
117 |
aataaagatttggaaagaaataaaatgagacctactctatcagtttgaca |
166 |
Q |
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||| ||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
21260134 |
aatgtagatttggaaagaaataaaatgagacctactgtatcagtttgaca |
21260183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 17 - 166
Target Start/End: Original strand, 21264615 - 21264764
Alignment:
| Q |
17 |
catagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaataggtttttcacttgtatatatagaatacctttacactcttgt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
21264615 |
catagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaataggttttttacttgtatatatagaatacctttacactcttgt |
21264714 |
T |
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| Q |
117 |
aataaagatttggaaagaaataaaatgagacctactctatcagtttgaca |
166 |
Q |
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||| ||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
21264715 |
aatgtagatttggaaagaaataaaatgagacctactgtatcagtttgaca |
21264764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 132; Significance: 3e-68; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 17 - 168
Target Start/End: Original strand, 6847758 - 6847909
Alignment:
| Q |
17 |
catagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaataggtttttcacttgtatatatagaatacctttacactcttgt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
6847758 |
catagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaataggttttttacttgtatatatagaatacctttacactcttgt |
6847857 |
T |
|
| Q |
117 |
aataaagatttggaaagaaataaaatgagacctactctatcagtttgacaaa |
168 |
Q |
| |
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||| ||||||||||||||||||||||||||||||| ||||||||| ||||| |
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| T |
6847858 |
aatgtagatttggaaagaaataaaatgagacctactgtatcagtttaacaaa |
6847909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 17 - 162
Target Start/End: Original strand, 6843155 - 6843300
Alignment:
| Q |
17 |
catagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaataggtttttcacttgtatatatagaatacctttacactcttgt |
116 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |
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| T |
6843155 |
catagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaatagattttttacttgtatatatagaatacctttacactcttgt |
6843254 |
T |
|
| Q |
117 |
aataaagatttggaaagaaataaaatgagacctactctatcagttt |
162 |
Q |
| |
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||| ||||||||||||||||||||||||||||||| ||||||||| |
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| T |
6843255 |
aatgtagatttggaaagaaataaaatgagacctactgtatcagttt |
6843300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 195 - 271
Target Start/End: Original strand, 38632768 - 38632844
Alignment:
| Q |
195 |
ttgatagtaatcagtaatggcttgattcaaccaattagaacaaatactatggggcttatagtcattctgttctcctc |
271 |
Q |
| |
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|||| ||||||||||||||||||||||| ||||| ||||||| ||| | || || ||||||||||||||||||| |
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| T |
38632768 |
ttgagagtaatcagtaatggcttgattcgaccaacaagaacaagtaccacaggttttttagtcattctgttctcctc |
38632844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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